Wall clock time and date at job start Sat Apr 11 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34643 * 117.00161 * 2 1 4 4 O 1.21511 * 119.99764 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00181 * 180.02562 * 3 2 1 6 6 C 1.46928 * 120.63217 * 359.72366 * 5 3 2 7 7 C 1.53194 * 108.77203 * 233.88285 * 6 5 3 8 8 C 1.53038 * 109.31346 * 305.35721 * 7 6 5 9 9 N 1.46499 * 109.44749 * 181.38160 * 8 7 6 10 10 C 1.34767 * 120.00297 * 84.94327 * 9 8 7 11 11 O 1.21591 * 119.99719 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00498 * 179.97438 * 10 9 8 13 13 C 1.47023 * 125.64559 * 359.68690 * 12 10 9 14 14 C 1.54327 * 107.26551 * 178.84895 * 13 12 10 15 15 C 1.55160 * 103.02416 * 338.14744 * 14 13 12 16 16 O 1.42902 * 111.00135 * 277.23280 * 15 14 13 17 17 C 1.50697 * 111.03887 * 153.39254 * 15 14 13 18 18 H 1.07997 * 120.00261 * 272.60578 * 17 15 14 19 19 C 1.37882 * 119.99917 * 92.61054 * 17 15 14 20 20 N 1.31516 * 120.00039 * 173.51683 * 19 17 15 21 21 Si 1.86794 * 120.00017 * 353.51743 * 19 17 15 22 22 H 1.48505 * 109.47441 * 87.32353 * 21 19 17 23 23 H 1.48498 * 109.47332 * 207.32171 * 21 19 17 24 24 H 1.48502 * 109.47135 * 327.32230 * 21 19 17 25 25 C 1.47425 * 125.64885 * 180.02562 * 12 10 9 26 26 C 1.53047 * 109.53376 * 61.36808 * 8 7 6 27 27 C 1.46927 * 120.63350 * 179.97438 * 5 3 2 28 28 H 1.09007 * 109.47085 * 299.99559 * 1 2 3 29 29 H 1.08998 * 109.47674 * 59.99958 * 1 2 3 30 30 H 1.09003 * 109.47292 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.58199 * 353.66186 * 6 5 3 32 32 H 1.08995 * 109.59291 * 114.09150 * 6 5 3 33 33 H 1.09006 * 109.49617 * 185.40746 * 7 6 5 34 34 H 1.09001 * 109.50085 * 65.31570 * 7 6 5 35 35 H 1.08998 * 109.46365 * 301.34807 * 8 7 6 36 36 H 0.97005 * 119.99663 * 264.93410 * 9 8 7 37 37 H 1.09002 * 109.88654 * 298.39852 * 13 12 10 38 38 H 1.09005 * 109.87853 * 59.56550 * 13 12 10 39 39 H 1.09001 * 110.85502 * 219.67775 * 14 13 12 40 40 H 1.09007 * 110.51424 * 96.45577 * 14 13 12 41 41 H 0.96696 * 113.99909 * 168.39995 * 16 15 14 42 42 H 0.96999 * 119.99690 * 179.97438 * 20 19 17 43 43 H 1.08997 * 110.36876 * 322.92852 * 25 12 10 44 44 H 1.09000 * 110.36469 * 85.14623 * 25 12 10 45 45 H 1.09000 * 109.49553 * 178.68009 * 26 8 7 46 46 H 1.08998 * 109.49424 * 58.58890 * 26 8 7 47 47 H 1.08999 * 109.59113 * 245.91001 * 27 5 3 48 48 H 1.09000 * 109.58204 * 6.33127 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.2229 0.0469 0.0050 7 6 5.2079 0.1153 1.1762 8 6 6.0192 1.4094 1.0803 9 7 6.9851 1.4623 2.1805 10 6 8.1812 0.8538 2.0570 11 8 8.4586 0.2605 1.0325 12 7 9.0701 0.9028 3.0690 13 6 8.8681 1.5875 4.3543 14 6 10.1345 1.3499 5.2037 15 6 10.7508 0.0775 4.5644 16 8 10.1288 -1.1040 5.0736 17 6 12.2421 0.0337 4.7763 18 1 12.9020 0.5189 4.0724 19 6 12.7642 -0.6260 5.8687 20 7 14.0655 -0.7746 5.9871 21 14 11.6230 -1.3087 7.1806 22 1 11.1939 -2.6784 6.7995 23 1 12.3376 -1.3580 8.4814 24 1 10.4303 -0.4327 7.3038 25 6 10.4085 0.2848 3.0677 26 6 5.0770 2.6120 1.1706 27 6 4.0905 2.5719 -0.0011 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.5754 -0.8221 0.1225 32 1 4.7741 -0.0296 -0.9321 33 1 5.8818 -0.7405 1.1353 34 1 4.6568 0.1003 2.1166 35 1 6.5507 1.4351 0.1290 36 1 6.7637 1.9354 2.9979 37 1 8.7263 2.6553 4.1873 38 1 7.9990 1.1711 4.8635 39 1 9.8740 1.1700 6.2467 40 1 10.8175 2.1950 5.1159 41 1 10.3500 -1.9074 4.5831 42 1 14.4327 -1.2384 6.7558 43 1 10.3836 -0.6731 2.5481 44 1 11.1334 0.9507 2.5996 45 1 5.6578 3.5333 1.1258 46 1 4.5272 2.5735 2.1110 47 1 4.6310 2.7010 -0.9388 48 1 3.3557 3.3690 0.1122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825929247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:37 Heat of formation + Delta-G solvation = -145.107628 kcal Electronic energy + Delta-G solvation = -30680.062097 eV Core-core repulsion = 26349.548494 eV Total energy + Delta-G solvation = -4330.513603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.03354 -40.09353 -38.71450 -37.63104 -36.54942 -34.78855 -34.71853 -32.39707 -31.75506 -31.43396 -30.03690 -28.38230 -27.95269 -25.69946 -24.52200 -23.78800 -22.62645 -21.74116 -20.37527 -19.88732 -19.66661 -18.59333 -17.84051 -17.43086 -17.34855 -16.83840 -16.18133 -15.58484 -15.24398 -15.13033 -14.92052 -14.78159 -14.54239 -14.36231 -14.25417 -13.84994 -13.60359 -13.46577 -13.07114 -12.74833 -12.70576 -12.43938 -12.38029 -12.22660 -11.98184 -11.71992 -11.68567 -11.58707 -11.32382 -11.13128 -11.06043 -10.89267 -10.80527 -10.52509 -10.41231 -10.23373 -9.89230 -9.26545 -9.19913 -9.06535 -8.69707 -8.55112 -8.04493 -6.21416 -4.33564 1.78532 2.44606 2.83236 3.43673 3.44886 3.50275 3.51261 3.66725 4.13997 4.35139 4.47444 4.48965 4.63078 4.78292 4.79775 4.85796 4.88609 4.98709 5.02121 5.10763 5.12440 5.21876 5.30764 5.36360 5.40516 5.46604 5.53766 5.57441 5.70364 5.75869 5.82949 5.92834 5.97345 6.06321 6.09889 6.45479 6.50193 6.55507 6.62577 6.69508 6.92664 7.02266 7.28835 7.45571 7.90270 8.10080 8.23441 8.59645 8.79336 8.84095 9.39924 10.87359 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.025967 B = 0.002193 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.026672 B =12764.572603 C =13085.691483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.370 6.370 3 C 0.650 3.350 4 O -0.576 6.576 5 N -0.594 5.594 6 C 0.115 3.885 7 C -0.147 4.147 8 C 0.166 3.834 9 N -0.746 5.746 10 C 0.720 3.280 11 O -0.597 6.597 12 N -0.628 5.628 13 C 0.101 3.899 14 C -0.120 4.120 15 C 0.219 3.781 16 O -0.559 6.559 17 C -0.552 4.552 18 H 0.082 0.918 19 C 0.074 3.926 20 N -0.887 5.887 21 Si 0.952 3.048 22 H -0.293 1.293 23 H -0.327 1.327 24 H -0.270 1.270 25 C 0.109 3.891 26 C -0.143 4.143 27 C 0.132 3.868 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.394 0.606 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.371 0.629 42 H 0.267 0.733 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.569 4.448 -9.762 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.405 3.595 4 O -0.465 6.465 5 N -0.335 5.335 6 C -0.008 4.008 7 C -0.187 4.187 8 C 0.060 3.940 9 N -0.401 5.401 10 C 0.422 3.578 11 O -0.477 6.477 12 N -0.365 5.365 13 C -0.022 4.022 14 C -0.158 4.158 15 C 0.179 3.821 16 O -0.367 6.367 17 C -0.589 4.589 18 H 0.100 0.900 19 C -0.131 4.131 20 N -0.522 5.522 21 Si 0.788 3.212 22 H -0.221 1.221 23 H -0.258 1.258 24 H -0.196 1.196 25 C -0.014 4.014 26 C -0.182 4.182 27 C 0.010 3.990 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.228 0.772 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.219 0.781 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.758 4.655 -10.085 26.226 hybrid contribution -0.426 -0.504 0.810 1.045 sum -24.184 4.151 -9.275 26.232 Atomic orbital electron populations 1.23203 0.74405 1.03525 1.02706 1.86244 1.24151 1.30985 1.86996 1.18026 0.83144 0.82146 0.76204 1.90986 1.64251 1.34957 1.56325 1.46990 1.01938 1.08780 1.75763 1.21768 0.93521 0.86283 0.99192 1.22389 0.98037 0.99697 0.98549 1.20697 0.88283 0.93705 0.91341 1.45167 1.15604 1.59623 1.19701 1.15461 0.79645 0.79810 0.82892 1.90886 1.78543 1.49256 1.28968 1.47726 1.17312 1.56494 1.14932 1.22050 1.00130 0.95387 0.84627 1.22950 0.94332 0.99239 0.99294 1.20254 0.92371 0.82383 0.87106 1.86107 1.73867 1.18474 1.58249 1.21100 0.88562 1.37622 1.11658 0.90048 1.25123 0.95422 0.94350 0.98224 1.69970 1.11840 1.40519 1.29854 0.85631 0.78770 0.79291 0.77522 1.22091 1.25832 1.19625 1.22991 0.80509 0.97746 1.00168 1.22263 0.97369 0.99000 0.99589 1.21619 0.95024 0.83836 0.98487 0.91865 0.91857 0.87924 0.88686 0.90492 0.89422 0.91313 0.89057 0.77170 0.92745 0.92525 0.90202 0.89628 0.78067 0.92394 0.91215 0.91233 0.89354 0.90743 0.90355 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -3.51 9.20 -40.33 -0.37 -3.88 16 3 C 0.65 7.17 8.43 54.05 0.46 7.62 16 4 O -0.58 -7.77 15.54 -19.28 -0.30 -8.07 16 5 N -0.59 -5.47 2.97 -178.54 -0.53 -6.01 16 6 C 0.12 0.96 6.45 -3.71 -0.02 0.93 16 7 C -0.15 -1.42 5.65 -26.61 -0.15 -1.57 16 8 C 0.17 1.67 2.42 -67.89 -0.16 1.50 16 9 N -0.75 -9.05 5.04 -58.63 -0.30 -9.34 16 10 C 0.72 12.05 8.45 -86.92 -0.73 11.32 16 11 O -0.60 -11.95 16.26 5.29 0.09 -11.87 16 12 N -0.63 -10.84 3.33 -176.22 -0.59 -11.42 16 13 C 0.10 1.54 6.15 -3.06 -0.02 1.52 16 14 C -0.12 -2.23 5.90 -24.89 -0.15 -2.37 16 15 C 0.22 4.67 0.70 -89.61 -0.06 4.60 16 16 O -0.56 -11.83 8.52 -35.23 -0.30 -12.13 16 17 C -0.55 -14.21 8.89 -34.44 -0.31 -14.52 16 18 H 0.08 2.28 8.00 -52.49 -0.42 1.86 16 19 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 20 N -0.89 -25.82 13.96 55.43 0.77 -25.05 16 21 Si 0.95 22.88 24.93 -169.99 -4.24 18.65 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.33 -8.10 7.11 56.52 0.40 -7.70 16 24 H -0.27 -6.31 5.42 56.52 0.31 -6.00 16 25 C 0.11 2.14 6.07 -2.52 -0.02 2.12 16 26 C -0.14 -1.08 5.55 -26.59 -0.15 -1.22 16 27 C 0.13 1.03 6.44 -3.69 -0.02 1.01 16 28 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.75 6.93 -51.93 -0.36 0.39 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.06 7.58 -51.93 -0.39 0.66 16 36 H 0.39 4.06 7.59 -40.82 -0.31 3.75 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.53 6.65 -51.93 -0.35 1.18 16 40 H 0.09 1.56 8.03 -51.92 -0.42 1.14 16 41 H 0.37 7.09 8.99 45.56 0.41 7.49 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.07 1.41 8.02 -51.93 -0.42 1.00 16 44 H 0.07 1.41 7.99 -51.93 -0.41 0.99 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 0.85 7.00 -51.93 -0.36 0.48 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -34.16 381.12 -7.30 -41.46 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.91 Total: 7.65 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: -0.37 Total: 14.28 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.64 Total: -51.82 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -0.89 Total: -35.95 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.24 Total: 18.65 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.16 -7.30 -41.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825929247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.650 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds