Wall clock time and date at job start Sat Apr 11 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34643 * 117.00161 * 2 1 4 4 O 1.21511 * 119.99764 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00181 * 180.02562 * 3 2 1 6 6 C 1.46928 * 120.63217 * 359.72366 * 5 3 2 7 7 C 1.53194 * 108.77203 * 233.88285 * 6 5 3 8 8 C 1.53038 * 109.31346 * 305.35721 * 7 6 5 9 9 N 1.46499 * 109.44749 * 181.38160 * 8 7 6 10 10 C 1.34767 * 120.00297 * 84.94327 * 9 8 7 11 11 O 1.21591 * 119.99719 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00498 * 179.97438 * 10 9 8 13 13 C 1.47023 * 125.64559 * 359.68690 * 12 10 9 14 14 C 1.54327 * 107.26551 * 178.84895 * 13 12 10 15 15 C 1.55160 * 103.02416 * 338.14744 * 14 13 12 16 16 O 1.42902 * 111.00135 * 277.23280 * 15 14 13 17 17 C 1.50697 * 111.03887 * 153.39254 * 15 14 13 18 18 H 1.07997 * 120.00261 * 272.60578 * 17 15 14 19 19 C 1.37882 * 119.99917 * 92.61054 * 17 15 14 20 20 N 1.31516 * 120.00039 * 173.51683 * 19 17 15 21 21 Si 1.86794 * 120.00017 * 353.51743 * 19 17 15 22 22 H 1.48505 * 109.47441 * 87.32353 * 21 19 17 23 23 H 1.48498 * 109.47332 * 207.32171 * 21 19 17 24 24 H 1.48502 * 109.47135 * 327.32230 * 21 19 17 25 25 C 1.47425 * 125.64885 * 180.02562 * 12 10 9 26 26 C 1.53047 * 109.53376 * 61.36808 * 8 7 6 27 27 C 1.46927 * 120.63350 * 179.97438 * 5 3 2 28 28 H 1.09007 * 109.47085 * 299.99559 * 1 2 3 29 29 H 1.08998 * 109.47674 * 59.99958 * 1 2 3 30 30 H 1.09003 * 109.47292 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.58199 * 353.66186 * 6 5 3 32 32 H 1.08995 * 109.59291 * 114.09150 * 6 5 3 33 33 H 1.09006 * 109.49617 * 185.40746 * 7 6 5 34 34 H 1.09001 * 109.50085 * 65.31570 * 7 6 5 35 35 H 1.08998 * 109.46365 * 301.34807 * 8 7 6 36 36 H 0.97005 * 119.99663 * 264.93410 * 9 8 7 37 37 H 1.09002 * 109.88654 * 298.39852 * 13 12 10 38 38 H 1.09005 * 109.87853 * 59.56550 * 13 12 10 39 39 H 1.09001 * 110.85502 * 219.67775 * 14 13 12 40 40 H 1.09007 * 110.51424 * 96.45577 * 14 13 12 41 41 H 0.96696 * 113.99909 * 168.39995 * 16 15 14 42 42 H 0.96999 * 119.99690 * 179.97438 * 20 19 17 43 43 H 1.08997 * 110.36876 * 322.92852 * 25 12 10 44 44 H 1.09000 * 110.36469 * 85.14623 * 25 12 10 45 45 H 1.09000 * 109.49553 * 178.68009 * 26 8 7 46 46 H 1.08998 * 109.49424 * 58.58890 * 26 8 7 47 47 H 1.08999 * 109.59113 * 245.91001 * 27 5 3 48 48 H 1.09000 * 109.58204 * 6.33127 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.2229 0.0469 0.0050 7 6 5.2079 0.1153 1.1762 8 6 6.0192 1.4094 1.0803 9 7 6.9851 1.4623 2.1805 10 6 8.1812 0.8538 2.0570 11 8 8.4586 0.2605 1.0325 12 7 9.0701 0.9028 3.0690 13 6 8.8681 1.5875 4.3543 14 6 10.1345 1.3499 5.2037 15 6 10.7508 0.0775 4.5644 16 8 10.1288 -1.1040 5.0736 17 6 12.2421 0.0337 4.7763 18 1 12.9020 0.5189 4.0724 19 6 12.7642 -0.6260 5.8687 20 7 14.0655 -0.7746 5.9871 21 14 11.6230 -1.3087 7.1806 22 1 11.1939 -2.6784 6.7995 23 1 12.3376 -1.3580 8.4814 24 1 10.4303 -0.4327 7.3038 25 6 10.4085 0.2848 3.0677 26 6 5.0770 2.6120 1.1706 27 6 4.0905 2.5719 -0.0011 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.5754 -0.8221 0.1225 32 1 4.7741 -0.0296 -0.9321 33 1 5.8818 -0.7405 1.1353 34 1 4.6568 0.1003 2.1166 35 1 6.5507 1.4351 0.1290 36 1 6.7637 1.9354 2.9979 37 1 8.7263 2.6553 4.1873 38 1 7.9990 1.1711 4.8635 39 1 9.8740 1.1700 6.2467 40 1 10.8175 2.1950 5.1159 41 1 10.3500 -1.9074 4.5831 42 1 14.4327 -1.2384 6.7558 43 1 10.3836 -0.6731 2.5481 44 1 11.1334 0.9507 2.5996 45 1 5.6578 3.5333 1.1258 46 1 4.5272 2.5735 2.1110 47 1 4.6310 2.7010 -0.9388 48 1 3.3557 3.3690 0.1122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825929247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:36 Heat of formation + Delta-G solvation = -171.905320 kcal Electronic energy + Delta-G solvation = -30681.224132 eV Core-core repulsion = 26349.548494 eV Total energy + Delta-G solvation = -4331.675638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.83207 -41.32238 -39.80080 -38.85785 -37.38302 -36.30511 -35.75144 -34.43997 -32.75890 -32.21266 -31.38942 -29.90430 -28.58299 -27.20320 -25.64910 -24.48628 -23.98228 -22.57221 -21.54290 -21.21859 -20.83562 -19.59755 -19.27204 -18.79038 -18.16354 -17.58225 -17.38523 -16.98741 -16.93851 -16.49436 -15.90743 -15.73431 -15.49372 -15.46566 -15.18724 -15.03582 -14.62321 -14.54135 -14.43237 -14.00764 -13.85450 -13.69610 -13.44555 -13.28159 -13.15457 -13.02189 -12.93285 -12.73430 -12.35214 -12.28071 -12.19614 -12.12175 -11.93167 -11.80655 -11.67186 -11.63522 -11.31029 -11.20389 -10.62447 -10.39382 -10.17491 -9.92023 -9.40116 -8.32344 -6.45743 1.12203 1.52042 1.54489 1.57394 1.69862 1.76104 2.15873 2.47000 2.85489 2.98286 3.03159 3.50931 3.63861 3.77762 3.87299 3.97730 4.03999 4.11293 4.26510 4.29346 4.30598 4.35537 4.36811 4.45154 4.50407 4.63697 4.67575 4.71001 4.75188 4.79577 4.86171 4.89894 4.97826 5.03841 5.15372 5.22932 5.23904 5.24826 5.39925 5.41142 5.55115 5.57191 6.06734 6.12926 6.18129 6.60244 6.91435 7.04002 7.13260 7.32062 7.57541 8.80513 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.025967 B = 0.002193 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.026672 B =12764.572603 C =13085.691483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.375 6.375 3 C 0.646 3.354 4 O -0.606 6.606 5 N -0.591 5.591 6 C 0.121 3.879 7 C -0.139 4.139 8 C 0.163 3.837 9 N -0.727 5.727 10 C 0.717 3.283 11 O -0.635 6.635 12 N -0.631 5.631 13 C 0.109 3.891 14 C -0.119 4.119 15 C 0.216 3.784 16 O -0.559 6.559 17 C -0.547 4.547 18 H 0.044 0.956 19 C 0.023 3.977 20 N -0.937 5.937 21 Si 1.011 2.989 22 H -0.288 1.288 23 H -0.339 1.339 24 H -0.254 1.254 25 C 0.118 3.882 26 C -0.129 4.129 27 C 0.130 3.870 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.408 0.592 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.379 0.621 42 H 0.267 0.733 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.574 5.092 -9.449 28.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.288 6.288 3 C 0.401 3.599 4 O -0.498 6.498 5 N -0.331 5.331 6 C -0.002 4.002 7 C -0.179 4.179 8 C 0.058 3.942 9 N -0.382 5.382 10 C 0.420 3.580 11 O -0.517 6.517 12 N -0.368 5.368 13 C -0.014 4.014 14 C -0.157 4.157 15 C 0.175 3.825 16 O -0.368 6.368 17 C -0.585 4.585 18 H 0.063 0.937 19 C -0.176 4.176 20 N -0.575 5.575 21 Si 0.845 3.155 22 H -0.215 1.215 23 H -0.272 1.272 24 H -0.179 1.179 25 C -0.006 4.006 26 C -0.168 4.168 27 C 0.009 3.991 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.151 0.849 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.244 0.756 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.228 0.772 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.123 0.877 46 H 0.098 0.902 47 H 0.110 0.890 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -26.817 5.318 -9.773 29.033 hybrid contribution 0.515 -0.703 0.605 1.061 sum -26.302 4.616 -9.168 28.234 Atomic orbital electron populations 1.23480 0.72887 1.05520 1.02546 1.86251 1.25697 1.30182 1.86692 1.18226 0.83552 0.82175 0.75963 1.90962 1.64976 1.35979 1.57850 1.47108 1.01546 1.09488 1.75006 1.21747 0.93205 0.86259 0.98963 1.22273 0.97753 0.98610 0.99254 1.20847 0.88092 0.95171 0.90050 1.45041 1.14145 1.58284 1.20714 1.15599 0.80520 0.79818 0.82111 1.90865 1.79460 1.50919 1.30417 1.47633 1.16421 1.56735 1.15989 1.22116 0.98792 0.97472 0.82980 1.22856 0.95863 0.97295 0.99693 1.20142 0.89923 0.83695 0.88713 1.86063 1.73350 1.18817 1.58536 1.21346 0.91010 1.35960 1.10140 0.93744 1.25884 0.96379 0.95042 1.00332 1.70093 1.13776 1.42738 1.30857 0.84663 0.77221 0.79083 0.74520 1.21498 1.27162 1.17898 1.22595 0.82035 0.97261 0.98670 1.22164 0.96674 0.98286 0.99668 1.21735 0.94902 0.83180 0.99326 0.92129 0.91967 0.84879 0.88113 0.89727 0.91476 0.91053 0.90404 0.75592 0.89193 0.90509 0.90206 0.89741 0.77178 0.92480 0.92335 0.92497 0.87731 0.90233 0.89015 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 10.56 113.37 1.20 1.75 16 2 O -0.37 -6.49 9.20 -55.52 -0.51 -7.01 16 3 C 0.65 13.29 8.43 129.79 1.09 14.38 16 4 O -0.61 -15.73 15.54 19.81 0.31 -15.42 16 5 N -0.59 -9.74 2.97 -949.19 -2.82 -12.56 16 6 C 0.12 1.78 6.45 86.36 0.56 2.34 16 7 C -0.14 -2.43 5.65 30.67 0.17 -2.25 16 8 C 0.16 2.90 2.42 45.02 0.11 3.01 16 9 N -0.73 -15.48 5.04 -457.69 -2.31 -17.78 16 10 C 0.72 22.59 8.45 179.06 1.51 24.10 16 11 O -0.63 -24.92 16.26 -4.00 -0.07 -24.98 16 12 N -0.63 -20.39 3.33 -829.69 -2.76 -23.15 16 13 C 0.11 2.89 6.15 86.73 0.53 3.42 16 14 C -0.12 -4.12 5.90 31.78 0.19 -3.93 16 15 C 0.22 8.98 0.70 -10.14 -0.01 8.97 16 16 O -0.56 -22.54 8.52 -148.98 -1.27 -23.81 16 17 C -0.55 -28.61 8.89 25.60 0.23 -28.39 16 18 H 0.04 2.60 8.00 -2.91 -0.02 2.58 16 19 C 0.02 1.29 5.46 84.66 0.46 1.75 16 20 N -0.94 -56.12 13.96 21.45 0.30 -55.82 16 21 Si 1.01 46.81 24.93 68.60 1.71 48.52 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.34 -16.29 7.11 99.48 0.71 -15.59 16 24 H -0.25 -10.96 5.42 99.48 0.54 -10.42 16 25 C 0.12 4.61 6.07 86.86 0.53 5.14 16 26 C -0.13 -1.54 5.55 30.68 0.17 -1.37 16 27 C 0.13 1.72 6.44 86.37 0.56 2.28 16 28 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 1.40 6.93 -2.39 -0.02 1.38 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.66 7.58 -2.39 -0.02 1.64 16 36 H 0.41 6.67 7.59 -92.70 -0.70 5.97 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.08 2.79 6.65 -2.39 -0.02 2.77 16 40 H 0.08 2.93 8.03 -2.38 -0.02 2.91 16 41 H 0.38 13.93 8.99 -74.06 -0.67 13.27 16 42 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.06 2.38 8.02 -2.39 -0.02 2.36 16 44 H 0.06 2.34 7.99 -2.39 -0.02 2.32 16 45 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.10 1.44 7.00 -2.39 -0.02 1.43 16 Total: -1.00 -75.25 381.12 -0.66 -75.91 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -0.55 Total: 24.91 kcal Atomic # 6 Polarization: 23.89 SS G_CDS: 7.30 Total: 31.19 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -7.59 Total: -109.31 kcal Atomic # 8 Polarization: -69.68 SS G_CDS: -1.54 Total: -71.22 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.71 Total: 48.52 kcal Total: -75.25 -0.66 -75.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825929247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.997 kcal (2) G-P(sol) polarization free energy of solvation -75.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds