Wall clock time and date at job start Sat Apr 11 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47688 * 2 1 4 4 N 1.46503 * 109.46994 * 120.00163 * 2 1 3 5 5 C 1.34780 * 119.99832 * 274.99969 * 4 2 1 6 6 O 1.21277 * 119.99669 * 359.97438 * 5 4 2 7 7 C 1.50705 * 119.99783 * 179.97438 * 5 4 2 8 8 N 1.46502 * 109.46977 * 179.97438 * 7 5 4 9 9 C 1.36938 * 119.99711 * 270.00235 * 8 7 5 10 10 H 1.07995 * 120.00003 * 21.66473 * 9 8 7 11 11 C 1.38810 * 119.99603 * 201.66800 * 9 8 7 12 12 N 1.31614 * 119.99961 * 8.48985 * 11 9 8 13 13 Si 1.86803 * 119.99792 * 188.48836 * 11 9 8 14 14 H 1.48497 * 109.47236 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46819 * 119.99882 * 13 11 9 16 16 H 1.48499 * 109.47109 * 239.99691 * 13 11 9 17 17 C 1.46495 * 119.99941 * 89.99767 * 8 7 5 18 18 C 1.50698 * 109.46734 * 84.18104 * 17 8 7 19 19 O 1.20823 * 120.00564 * 359.97438 * 18 17 8 20 20 O 1.34232 * 119.99830 * 180.02562 * 18 17 8 21 21 C 1.50703 * 109.47307 * 239.99927 * 2 1 3 22 22 O 1.21283 * 119.99925 * 266.57828 * 21 2 1 23 23 N 1.34768 * 120.00156 * 86.57342 * 21 2 1 24 24 C 1.46924 * 120.63512 * 174.50274 * 23 21 2 25 25 C 1.53190 * 108.78276 * 126.36673 * 24 23 21 26 26 C 1.53041 * 109.30882 * 54.63624 * 25 24 23 27 27 C 1.53046 * 109.54143 * 298.63421 * 26 25 24 28 28 C 1.46938 * 120.63085 * 354.47358 * 23 21 2 29 29 H 1.09002 * 109.46818 * 305.15634 * 1 2 3 30 30 H 1.09005 * 109.46948 * 65.15083 * 1 2 3 31 31 H 1.08995 * 109.47431 * 185.15446 * 1 2 3 32 32 H 0.96997 * 120.00069 * 94.99391 * 4 2 1 33 33 H 1.08998 * 109.46773 * 299.99764 * 7 5 4 34 34 H 1.08998 * 109.47113 * 59.99810 * 7 5 4 35 35 H 0.97005 * 119.99710 * 180.02562 * 12 11 9 36 36 H 1.09003 * 109.46994 * 204.17886 * 17 8 7 37 37 H 1.09001 * 109.47232 * 324.18056 * 17 8 7 38 38 H 0.96699 * 117.00260 * 180.02562 * 20 18 17 39 39 H 1.09004 * 109.58394 * 6.57834 * 24 23 21 40 40 H 1.08998 * 109.58391 * 246.15998 * 24 23 21 41 41 H 1.08995 * 109.49912 * 174.58414 * 25 24 23 42 42 H 1.09000 * 109.49872 * 294.69149 * 25 24 23 43 43 H 1.09000 * 109.46451 * 58.65656 * 26 25 24 44 44 H 1.09000 * 109.46251 * 178.61851 * 26 25 24 45 45 H 1.09002 * 109.50168 * 181.31597 * 27 26 25 46 46 H 1.08996 * 109.49793 * 301.42118 * 27 26 25 47 47 H 1.09000 * 109.58161 * 113.83907 * 28 23 21 48 48 H 1.09000 * 109.58260 * 353.42346 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8590 1.1585 2.4115 7 6 2.6488 -0.7289 3.5878 8 7 2.6988 0.2126 4.7091 9 6 3.8362 0.9382 4.9437 10 1 4.5495 1.0962 4.1484 11 6 4.0723 1.4704 6.2038 12 7 3.2944 1.1416 7.2133 13 14 5.4941 2.6531 6.4667 14 1 6.2115 2.8579 5.1827 15 1 4.9716 3.9544 6.9555 16 1 6.4299 2.0867 7.4711 17 6 1.5319 0.3779 5.5793 18 6 1.5420 -0.6910 6.6415 19 8 2.4322 -1.5074 6.6686 20 8 0.5614 -0.7367 7.5569 21 6 2.0324 -0.7104 -1.2305 22 8 2.2937 -1.8938 -1.1832 23 7 2.1913 -0.0308 -2.3833 24 6 2.7922 -0.6782 -3.5573 25 6 1.8449 -0.5142 -4.7500 26 6 1.5283 0.9705 -4.9443 27 6 0.8303 1.5128 -3.6949 28 6 1.7662 1.3717 -2.4903 29 1 -0.3633 0.5918 0.8402 30 1 -0.3633 0.4319 -0.9326 31 1 -0.3634 -1.0234 0.0923 32 1 2.2489 -1.6318 1.1526 33 1 1.9758 -1.5506 3.8326 34 1 3.6479 -1.1215 3.3987 35 1 3.4593 1.5139 8.0938 36 1 1.5670 1.3598 6.0515 37 1 0.6213 0.2923 4.9862 38 1 0.6109 -1.4402 8.2186 39 1 2.9424 -1.7384 -3.3531 40 1 3.7494 -0.2085 -3.7836 41 1 2.3209 -0.9053 -5.6492 42 1 0.9216 -1.0611 -4.5591 43 1 2.4544 1.5207 -5.1105 44 1 0.8739 1.0923 -5.8074 45 1 0.5841 2.5643 -3.8431 46 1 -0.0834 0.9467 -3.5139 47 1 2.6397 2.0086 -2.6295 48 1 1.2393 1.6640 -1.5820 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827631094.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:59 Heat of formation + Delta-G solvation = -134.700585 kcal Electronic energy + Delta-G solvation = -30892.710146 eV Core-core repulsion = 26562.647826 eV Total energy + Delta-G solvation = -4330.062320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.71286 -39.06460 -38.54015 -37.60360 -35.58891 -34.67062 -34.22904 -33.25399 -31.73552 -31.39019 -30.35013 -27.90333 -26.41631 -26.10732 -24.23539 -23.37661 -22.45052 -21.17525 -20.27926 -19.76823 -19.15721 -17.70315 -17.00421 -16.68179 -16.59940 -15.96484 -15.52225 -15.39525 -15.06485 -14.95294 -14.77967 -14.59505 -14.33367 -14.16388 -14.05583 -13.60340 -13.55345 -13.31219 -13.08782 -12.89297 -12.71106 -12.37935 -12.35118 -11.77370 -11.67976 -11.63114 -11.36644 -11.27083 -11.09329 -11.00479 -10.96450 -10.86270 -10.57050 -10.12684 -10.08761 -9.94457 -9.88235 -9.46694 -9.07324 -8.96263 -8.76446 -8.56926 -7.02153 -5.89680 -3.30980 2.35513 2.60856 3.32973 3.37812 3.43735 3.47007 3.58039 3.93843 4.16477 4.35496 4.38618 4.47239 4.53953 4.58971 4.69053 4.90403 4.99793 5.06182 5.10932 5.15815 5.32796 5.36177 5.37404 5.41101 5.45170 5.45952 5.53017 5.63747 5.68655 5.69101 5.84626 5.91351 6.07770 6.12525 6.21175 6.30916 6.47564 6.71455 6.99175 7.09566 7.17369 7.68687 7.88882 7.89452 7.94519 8.21461 8.86159 9.03808 9.46830 9.68328 10.10013 11.21273 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016485 B = 0.002631 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.085035 B =10640.457871 C =11458.189990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.126 3.874 3 H 0.106 0.894 4 N -0.730 5.730 5 C 0.484 3.516 6 O -0.522 6.522 7 C 0.134 3.866 8 N -0.545 5.545 9 C -0.244 4.244 10 H 0.077 0.923 11 C 0.003 3.997 12 N -0.915 5.915 13 Si 0.921 3.079 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.290 1.290 17 C 0.195 3.805 18 C 0.483 3.517 19 O -0.523 6.523 20 O -0.542 6.542 21 C 0.518 3.482 22 O -0.536 6.536 23 N -0.611 5.611 24 C 0.109 3.891 25 C -0.134 4.134 26 C -0.121 4.121 27 C -0.135 4.135 28 C 0.099 3.901 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.405 0.595 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.258 0.742 36 H 0.123 0.877 37 H 0.046 0.954 38 H 0.380 0.620 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.108 -1.181 -21.753 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.017 3.983 3 H 0.124 0.876 4 N -0.388 5.388 5 C 0.269 3.731 6 O -0.395 6.395 7 C 0.002 3.998 8 N -0.262 5.262 9 C -0.373 4.373 10 H 0.095 0.905 11 C -0.194 4.194 12 N -0.561 5.561 13 Si 0.751 3.249 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.217 1.217 17 C 0.066 3.934 18 C 0.323 3.677 19 O -0.409 6.409 20 O -0.352 6.352 21 C 0.306 3.694 22 O -0.412 6.412 23 N -0.345 5.345 24 C -0.013 4.013 25 C -0.172 4.172 26 C -0.158 4.158 27 C -0.173 4.173 28 C -0.023 4.023 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.241 0.759 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.140 0.860 37 H 0.064 0.936 38 H 0.236 0.764 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.873 -0.768 -21.761 22.834 hybrid contribution 0.972 -0.242 0.611 1.173 sum -5.902 -1.010 -21.150 21.981 Atomic orbital electron populations 1.22121 0.93117 1.03341 1.02967 1.20685 0.95606 0.98032 0.83986 0.87639 1.46220 1.69527 1.14625 1.08418 1.23176 0.76618 0.88480 0.84780 1.90628 1.48244 1.16044 1.84607 1.20676 1.01232 0.91742 0.86153 1.43325 1.12361 1.44125 1.26414 1.19275 0.98114 1.25254 0.94609 0.90535 1.24934 0.98914 1.00659 0.94923 1.69658 1.40274 1.45872 1.00280 0.85926 0.81239 0.80070 0.77693 1.20273 1.21459 1.21717 1.20169 0.87879 0.97233 0.88134 1.25150 0.77168 0.84210 0.81163 1.90494 1.35457 1.41231 1.73755 1.84626 1.52191 1.55987 1.42438 1.20853 0.76911 0.87193 0.84492 1.90673 1.50852 1.15282 1.84441 1.48059 1.61818 1.12913 1.11719 1.21612 0.95515 0.99835 0.84322 1.21912 1.00328 0.96994 0.98013 1.21527 1.00850 0.95800 0.97661 1.21925 0.98769 1.01954 0.94694 1.21900 0.98858 0.81677 0.99900 0.90351 0.91816 0.91680 0.75947 0.91000 0.89666 0.93168 0.85974 0.93574 0.76435 0.88873 0.91416 0.90726 0.91474 0.91641 0.91615 0.90367 0.91321 0.90892 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.18 37.16 0.34 -1.42 16 2 C 0.13 1.65 2.11 -69.08 -0.15 1.51 16 3 H 0.11 1.44 6.12 -51.93 -0.32 1.12 16 4 N -0.73 -11.10 5.06 -54.93 -0.28 -11.38 16 5 C 0.48 9.17 7.86 -10.98 -0.09 9.08 16 6 O -0.52 -11.58 16.09 5.56 0.09 -11.49 16 7 C 0.13 2.74 6.12 -5.19 -0.03 2.71 16 8 N -0.54 -13.61 1.52 -175.99 -0.27 -13.87 16 9 C -0.24 -6.68 9.69 -15.06 -0.15 -6.83 16 10 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 11 C 0.00 0.07 5.15 -17.43 -0.09 -0.02 16 12 N -0.91 -26.07 8.75 55.49 0.49 -25.58 16 13 Si 0.92 22.19 29.56 -169.99 -5.03 17.16 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 C 0.19 4.72 5.48 -5.20 -0.03 4.69 16 18 C 0.48 11.73 6.43 36.00 0.23 11.96 16 19 O -0.52 -14.24 16.88 -18.75 -0.32 -14.55 16 20 O -0.54 -11.17 13.42 -39.26 -0.53 -11.70 16 21 C 0.52 6.61 6.89 -10.99 -0.08 6.53 16 22 O -0.54 -8.30 15.45 5.55 0.09 -8.21 16 23 N -0.61 -6.06 2.97 -172.76 -0.51 -6.58 16 24 C 0.11 0.94 6.44 -3.71 -0.02 0.91 16 25 C -0.13 -0.86 6.08 -26.61 -0.16 -1.02 16 26 C -0.12 -0.66 5.88 -26.69 -0.16 -0.82 16 27 C -0.14 -0.79 6.08 -26.61 -0.16 -0.95 16 28 C 0.10 0.76 5.97 -3.71 -0.02 0.73 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.56 7.31 -51.93 -0.38 0.18 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.40 5.77 7.80 -40.82 -0.32 5.45 16 33 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.09 1.70 8.04 -51.93 -0.42 1.28 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.12 3.25 6.33 -51.93 -0.33 2.92 16 37 H 0.05 1.00 8.11 -51.93 -0.42 0.58 16 38 H 0.38 6.19 9.10 45.56 0.41 6.61 16 39 H 0.09 0.94 7.00 -51.93 -0.36 0.58 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 0.72 4.94 -51.93 -0.26 0.46 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -35.61 390.79 -7.52 -43.12 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -6.58 Total: 10.13 kcal Atomic # 6 Polarization: 27.62 SS G_CDS: -0.56 Total: 27.06 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.57 Total: -57.42 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -0.67 Total: -45.95 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.61 -7.52 -43.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827631094.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.579 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds