Wall clock time and date at job start Sat Apr 11 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47688 * 2 1 4 4 N 1.46503 * 109.46994 * 120.00163 * 2 1 3 5 5 C 1.34780 * 119.99832 * 274.99969 * 4 2 1 6 6 O 1.21277 * 119.99669 * 359.97438 * 5 4 2 7 7 C 1.50705 * 119.99783 * 179.97438 * 5 4 2 8 8 N 1.46502 * 109.46977 * 179.97438 * 7 5 4 9 9 C 1.36938 * 119.99711 * 270.00235 * 8 7 5 10 10 H 1.07995 * 120.00003 * 21.66473 * 9 8 7 11 11 C 1.38810 * 119.99603 * 201.66800 * 9 8 7 12 12 N 1.31614 * 119.99961 * 8.48985 * 11 9 8 13 13 Si 1.86803 * 119.99792 * 188.48836 * 11 9 8 14 14 H 1.48497 * 109.47236 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46819 * 119.99882 * 13 11 9 16 16 H 1.48499 * 109.47109 * 239.99691 * 13 11 9 17 17 C 1.46495 * 119.99941 * 89.99767 * 8 7 5 18 18 C 1.50698 * 109.46734 * 84.18104 * 17 8 7 19 19 O 1.20823 * 120.00564 * 359.97438 * 18 17 8 20 20 O 1.34232 * 119.99830 * 180.02562 * 18 17 8 21 21 C 1.50703 * 109.47307 * 239.99927 * 2 1 3 22 22 O 1.21283 * 119.99925 * 266.57828 * 21 2 1 23 23 N 1.34768 * 120.00156 * 86.57342 * 21 2 1 24 24 C 1.46924 * 120.63512 * 174.50274 * 23 21 2 25 25 C 1.53190 * 108.78276 * 126.36673 * 24 23 21 26 26 C 1.53041 * 109.30882 * 54.63624 * 25 24 23 27 27 C 1.53046 * 109.54143 * 298.63421 * 26 25 24 28 28 C 1.46938 * 120.63085 * 354.47358 * 23 21 2 29 29 H 1.09002 * 109.46818 * 305.15634 * 1 2 3 30 30 H 1.09005 * 109.46948 * 65.15083 * 1 2 3 31 31 H 1.08995 * 109.47431 * 185.15446 * 1 2 3 32 32 H 0.96997 * 120.00069 * 94.99391 * 4 2 1 33 33 H 1.08998 * 109.46773 * 299.99764 * 7 5 4 34 34 H 1.08998 * 109.47113 * 59.99810 * 7 5 4 35 35 H 0.97005 * 119.99710 * 180.02562 * 12 11 9 36 36 H 1.09003 * 109.46994 * 204.17886 * 17 8 7 37 37 H 1.09001 * 109.47232 * 324.18056 * 17 8 7 38 38 H 0.96699 * 117.00260 * 180.02562 * 20 18 17 39 39 H 1.09004 * 109.58394 * 6.57834 * 24 23 21 40 40 H 1.08998 * 109.58391 * 246.15998 * 24 23 21 41 41 H 1.08995 * 109.49912 * 174.58414 * 25 24 23 42 42 H 1.09000 * 109.49872 * 294.69149 * 25 24 23 43 43 H 1.09000 * 109.46451 * 58.65656 * 26 25 24 44 44 H 1.09000 * 109.46251 * 178.61851 * 26 25 24 45 45 H 1.09002 * 109.50168 * 181.31597 * 27 26 25 46 46 H 1.08996 * 109.49793 * 301.42118 * 27 26 25 47 47 H 1.09000 * 109.58161 * 113.83907 * 28 23 21 48 48 H 1.09000 * 109.58260 * 353.42346 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8590 1.1585 2.4115 7 6 2.6488 -0.7289 3.5878 8 7 2.6988 0.2126 4.7091 9 6 3.8362 0.9382 4.9437 10 1 4.5495 1.0962 4.1484 11 6 4.0723 1.4704 6.2038 12 7 3.2944 1.1416 7.2133 13 14 5.4941 2.6531 6.4667 14 1 6.2115 2.8579 5.1827 15 1 4.9716 3.9544 6.9555 16 1 6.4299 2.0867 7.4711 17 6 1.5319 0.3779 5.5793 18 6 1.5420 -0.6910 6.6415 19 8 2.4322 -1.5074 6.6686 20 8 0.5614 -0.7367 7.5569 21 6 2.0324 -0.7104 -1.2305 22 8 2.2937 -1.8938 -1.1832 23 7 2.1913 -0.0308 -2.3833 24 6 2.7922 -0.6782 -3.5573 25 6 1.8449 -0.5142 -4.7500 26 6 1.5283 0.9705 -4.9443 27 6 0.8303 1.5128 -3.6949 28 6 1.7662 1.3717 -2.4903 29 1 -0.3633 0.5918 0.8402 30 1 -0.3633 0.4319 -0.9326 31 1 -0.3634 -1.0234 0.0923 32 1 2.2489 -1.6318 1.1526 33 1 1.9758 -1.5506 3.8326 34 1 3.6479 -1.1215 3.3987 35 1 3.4593 1.5139 8.0938 36 1 1.5670 1.3598 6.0515 37 1 0.6213 0.2923 4.9862 38 1 0.6109 -1.4402 8.2186 39 1 2.9424 -1.7384 -3.3531 40 1 3.7494 -0.2085 -3.7836 41 1 2.3209 -0.9053 -5.6492 42 1 0.9216 -1.0611 -4.5591 43 1 2.4544 1.5207 -5.1105 44 1 0.8739 1.0923 -5.8074 45 1 0.5841 2.5643 -3.8431 46 1 -0.0834 0.9467 -3.5139 47 1 2.6397 2.0086 -2.6295 48 1 1.2393 1.6640 -1.5820 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827631094.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:58 Heat of formation + Delta-G solvation = -159.728821 kcal Electronic energy + Delta-G solvation = -30893.795452 eV Core-core repulsion = 26562.647826 eV Total energy + Delta-G solvation = -4331.147626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70001 -40.67403 -40.17214 -38.46750 -37.34757 -36.24164 -35.87390 -34.03876 -33.41506 -32.39730 -31.45377 -29.66191 -28.23398 -26.92265 -25.22257 -24.46449 -23.78798 -22.21980 -21.73581 -21.25852 -20.02545 -19.02631 -18.64912 -18.48065 -17.83451 -17.39618 -17.00709 -16.76915 -16.47743 -16.14887 -16.02310 -15.91904 -15.43742 -15.28872 -15.11516 -14.89550 -14.77352 -14.64190 -14.26969 -14.13857 -13.61085 -13.55895 -13.33521 -13.21648 -13.15244 -12.92305 -12.76598 -12.60742 -12.39675 -12.21686 -12.12426 -12.01299 -11.87806 -11.85262 -11.63908 -11.49010 -11.31353 -10.89802 -10.84489 -10.55995 -10.11721 -9.72272 -8.96765 -7.96655 -5.38727 1.33530 1.46996 1.47514 1.58131 1.70308 1.82663 2.01838 2.28175 2.53281 2.80469 3.27599 3.30509 3.53624 3.80625 3.94509 3.97531 3.99408 4.05877 4.12773 4.20788 4.34883 4.48493 4.48981 4.58311 4.59950 4.60000 4.71694 4.75735 4.82246 4.90780 4.93829 5.04950 5.13116 5.16698 5.18394 5.23189 5.24110 5.42234 5.45351 5.53301 5.56651 6.15053 6.19467 6.22312 6.59089 6.94686 7.00238 7.37757 7.59494 7.76214 8.09088 9.12128 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016485 B = 0.002631 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.085035 B =10640.457871 C =11458.189990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.125 3.875 3 H 0.103 0.897 4 N -0.717 5.717 5 C 0.496 3.504 6 O -0.556 6.556 7 C 0.131 3.869 8 N -0.562 5.562 9 C -0.252 4.252 10 H 0.072 0.928 11 C -0.047 4.047 12 N -0.935 5.935 13 Si 0.979 3.021 14 H -0.270 1.270 15 H -0.287 1.287 16 H -0.295 1.295 17 C 0.196 3.804 18 C 0.489 3.511 19 O -0.556 6.556 20 O -0.532 6.532 21 C 0.517 3.483 22 O -0.570 6.570 23 N -0.604 5.604 24 C 0.104 3.896 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.131 4.131 28 C 0.092 3.908 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.411 0.589 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.252 0.748 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.403 0.597 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.616 -0.621 -23.794 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.016 3.984 3 H 0.121 0.879 4 N -0.373 5.373 5 C 0.281 3.719 6 O -0.433 6.433 7 C 0.000 4.000 8 N -0.280 5.280 9 C -0.381 4.381 10 H 0.089 0.911 11 C -0.241 4.241 12 N -0.582 5.582 13 Si 0.808 3.192 14 H -0.195 1.195 15 H -0.213 1.213 16 H -0.223 1.223 17 C 0.067 3.933 18 C 0.331 3.669 19 O -0.446 6.446 20 O -0.344 6.344 21 C 0.304 3.696 22 O -0.449 6.449 23 N -0.337 5.337 24 C -0.017 4.017 25 C -0.166 4.166 26 C -0.156 4.156 27 C -0.169 4.169 28 C -0.030 4.030 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.248 0.752 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.261 0.739 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.114 0.886 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.413 -0.219 -23.872 24.997 hybrid contribution 1.076 -0.460 1.154 1.643 sum -6.337 -0.679 -22.718 23.595 Atomic orbital electron populations 1.22051 0.91476 1.03308 1.03878 1.20835 0.96868 0.97485 0.83211 0.87949 1.45976 1.68307 1.14786 1.08261 1.22546 0.76353 0.87734 0.85273 1.90617 1.50142 1.17314 1.85235 1.20808 1.01978 0.91612 0.85569 1.43420 1.11908 1.44983 1.27727 1.19462 0.98708 1.25456 0.94478 0.91053 1.25635 1.01275 1.02362 0.94873 1.69803 1.41474 1.46785 1.00137 0.85020 0.78613 0.78132 0.77457 1.19495 1.21309 1.22252 1.20074 0.88731 0.96034 0.88461 1.25056 0.76920 0.83509 0.81402 1.90474 1.36846 1.42547 1.74733 1.84541 1.50644 1.56806 1.42387 1.20721 0.76961 0.86786 0.85098 1.90661 1.52690 1.16555 1.85027 1.48164 1.60616 1.13743 1.11175 1.21761 0.96701 0.98749 0.84529 1.21876 0.99370 0.97927 0.97444 1.21538 1.01423 0.94816 0.97863 1.21919 0.98026 1.03087 0.93870 1.22134 0.99773 0.80228 1.00860 0.91648 0.89094 0.91713 0.75226 0.89381 0.89459 0.93870 0.88501 0.91234 0.73912 0.90798 0.90224 0.89166 0.92432 0.90972 0.90337 0.88597 0.91671 0.89928 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.18 71.98 0.66 -2.50 16 2 C 0.12 3.16 2.11 44.25 0.09 3.25 16 3 H 0.10 2.71 6.12 -2.39 -0.01 2.70 16 4 N -0.72 -21.44 5.06 -446.08 -2.25 -23.70 16 5 C 0.50 18.64 7.86 87.66 0.69 19.33 16 6 O -0.56 -24.69 16.09 -3.02 -0.05 -24.74 16 7 C 0.13 5.33 6.12 85.63 0.52 5.86 16 8 N -0.56 -28.22 1.52 -710.70 -1.08 -29.30 16 9 C -0.25 -13.92 9.69 84.03 0.81 -13.10 16 10 H 0.07 3.92 7.84 -2.91 -0.02 3.90 16 11 C -0.05 -2.64 5.15 84.86 0.44 -2.21 16 12 N -0.93 -53.84 8.75 21.65 0.19 -53.65 16 13 Si 0.98 46.00 29.56 68.60 2.03 48.03 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 15 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 17 C 0.20 9.53 5.48 85.63 0.47 10.00 16 18 C 0.49 23.63 6.43 71.24 0.46 24.08 16 19 O -0.56 -30.29 16.88 21.97 0.37 -29.92 16 20 O -0.53 -21.31 13.42 -51.44 -0.69 -22.00 16 21 C 0.52 12.80 6.89 87.66 0.60 13.40 16 22 O -0.57 -17.52 15.45 -3.04 -0.05 -17.57 16 23 N -0.60 -11.18 2.97 -818.89 -2.43 -13.61 16 24 C 0.10 1.65 6.44 86.36 0.56 2.20 16 25 C -0.13 -1.37 6.08 30.67 0.19 -1.19 16 26 C -0.12 -0.95 5.88 30.62 0.18 -0.77 16 27 C -0.13 -1.17 6.08 30.67 0.19 -0.98 16 28 C 0.09 1.21 5.97 86.36 0.52 1.72 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.42 7.31 -2.38 -0.02 1.40 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.41 11.51 7.80 -92.71 -0.72 10.78 16 33 H 0.09 3.27 8.07 -2.39 -0.02 3.25 16 34 H 0.09 3.48 8.04 -2.39 -0.02 3.46 16 35 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 36 H 0.10 5.23 6.33 -2.39 -0.02 5.22 16 37 H 0.07 2.99 8.11 -2.39 -0.02 2.97 16 38 H 0.40 12.44 9.10 -74.06 -0.67 11.77 16 39 H 0.07 1.47 7.00 -2.38 -0.02 1.46 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.09 1.23 4.94 -2.39 -0.01 1.22 16 Total: -1.00 -76.66 390.79 2.01 -74.65 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -0.40 Total: 32.72 kcal Atomic # 6 Polarization: 52.72 SS G_CDS: 6.38 Total: 59.10 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -5.58 Total: -120.27 kcal Atomic # 8 Polarization: -93.82 SS G_CDS: -0.42 Total: -94.23 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -76.66 2.01 -74.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827631094.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.078 kcal (2) G-P(sol) polarization free energy of solvation -76.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds