Wall clock time and date at job start Sat Apr 11 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42894 * 109.47052 * 2 1 4 4 C 1.34946 * 116.99973 * 179.97438 * 3 2 1 5 5 O 1.21681 * 119.99580 * 0.02562 * 4 3 2 6 6 C 1.41450 * 120.00393 * 180.02562 * 4 3 2 7 7 C 1.35047 * 121.12868 * 78.22971 * 6 4 3 8 8 C 1.50701 * 119.46649 * 359.96045 * 7 6 4 9 9 N 1.46498 * 109.47199 * 115.07819 * 8 7 6 10 10 C 1.36935 * 120.00014 * 84.09043 * 9 8 7 11 11 H 1.08003 * 120.00017 * 209.02280 * 10 9 8 12 12 C 1.38813 * 120.00281 * 29.02743 * 10 9 8 13 13 N 1.31620 * 119.99945 * 41.25934 * 12 10 9 14 14 Si 1.86799 * 120.00129 * 221.26796 * 12 10 9 15 15 H 1.48495 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.46966 * 299.99609 * 14 12 10 17 17 H 1.48501 * 109.46993 * 59.99450 * 14 12 10 18 18 C 1.46498 * 120.00123 * 264.09512 * 9 8 7 19 19 C 1.53000 * 109.46874 * 269.99782 * 18 9 8 20 20 O 1.42905 * 109.47110 * 64.99857 * 19 18 9 21 21 C 1.42901 * 113.99851 * 179.97438 * 20 19 18 22 22 N 1.36564 * 121.07083 * 180.23347 * 7 6 4 23 23 C 1.33896 * 123.67642 * 359.45961 * 22 7 6 24 24 O 1.21562 * 118.92482 * 180.30620 * 23 22 7 25 25 N 1.34770 * 122.15350 * 0.54594 * 23 22 7 26 26 C 1.47262 * 118.41755 * 359.74302 * 25 23 22 27 27 H 1.09002 * 107.95179 * 238.11279 * 26 25 23 28 28 C 1.53001 * 107.93060 * 121.85801 * 26 25 23 29 29 H 1.09001 * 109.46568 * 59.99782 * 1 2 3 30 30 H 1.08997 * 109.47136 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46926 * 300.00122 * 1 2 3 32 32 H 1.08995 * 109.46926 * 239.99878 * 2 1 3 33 33 H 1.09001 * 109.46568 * 120.00218 * 2 1 3 34 34 H 1.09000 * 109.47039 * 355.07590 * 8 7 6 35 35 H 1.09004 * 109.47141 * 235.07799 * 8 7 6 36 36 H 0.97004 * 119.99813 * 5.55136 * 13 12 10 37 37 H 1.09004 * 109.47094 * 29.99467 * 18 9 8 38 38 H 1.08994 * 109.47443 * 150.00155 * 18 9 8 39 39 H 1.09002 * 109.47226 * 184.99641 * 19 18 9 40 40 H 1.09000 * 109.47264 * 304.99792 * 19 18 9 41 41 H 1.09004 * 109.47097 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.47392 * 299.99812 * 21 20 19 43 43 H 1.09000 * 109.47030 * 60.00259 * 21 20 19 44 44 H 0.97001 * 118.16139 * 179.71973 * 22 7 6 45 45 H 0.96997 * 120.79560 * 179.75365 * 25 23 22 46 46 H 1.08997 * 109.47047 * 292.74313 * 28 26 25 47 47 H 1.08995 * 109.46882 * 52.73652 * 28 26 25 48 48 H 1.09001 * 109.47427 * 172.74433 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3442 1.5240 0.0005 5 8 4.0854 0.5590 0.0005 6 6 3.8849 2.8311 0.0011 7 6 3.9335 3.5660 1.1331 8 6 3.4019 2.9847 2.4178 9 7 4.5017 2.8209 3.3716 10 6 4.8988 3.8776 4.1468 11 1 5.9239 3.9481 4.4795 12 6 3.9838 4.8581 4.5050 13 7 2.7628 4.5201 4.8617 14 14 4.4854 6.6573 4.4807 15 1 3.3355 7.4974 4.9014 16 1 5.6205 6.8674 5.4148 17 1 4.8988 7.0374 3.1059 18 6 5.1768 1.5267 3.4961 19 6 4.4696 0.6827 4.5583 20 8 3.1444 0.3772 4.1194 21 6 2.3936 -0.4126 5.0438 22 7 4.4515 4.8296 1.1313 23 6 4.9505 5.4260 0.0413 24 8 5.3955 6.5530 0.1393 25 7 4.9713 4.8195 -1.1621 26 6 4.4297 3.4541 -1.2681 27 1 5.2210 2.8073 -1.6471 28 6 3.3047 3.4729 -2.3049 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.9476 2.0144 2.2169 35 1 2.6533 3.6563 2.8382 36 1 2.5256 3.5838 4.9522 37 1 5.1451 1.0068 2.5385 38 1 6.2145 1.6849 3.7895 39 1 5.0231 -0.2432 4.7145 40 1 4.4230 1.2404 5.4937 41 1 1.4000 -0.6014 4.6371 42 1 2.9041 -1.3613 5.2096 43 1 2.3039 0.1219 5.9894 44 1 4.4618 5.3213 1.9674 45 1 5.3344 5.2713 -1.9397 46 1 2.4699 4.0615 -1.9245 47 1 3.6708 3.9174 -3.2303 48 1 2.9718 2.4531 -2.4984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839087260.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:08 Heat of formation + Delta-G solvation = -119.808121 kcal Electronic energy + Delta-G solvation = -33040.009104 eV Core-core repulsion = 28710.592569 eV Total energy + Delta-G solvation = -4329.416534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.03941 -39.93378 -37.70265 -36.99100 -36.26006 -35.83910 -34.45024 -32.22132 -31.80391 -31.11659 -29.71037 -28.53915 -26.55543 -25.67991 -24.14917 -23.51865 -22.57975 -22.23962 -21.48602 -20.53566 -18.99994 -17.99655 -17.58944 -17.02709 -16.44469 -16.12401 -15.87761 -15.68917 -15.47291 -15.41057 -15.07219 -14.53915 -14.19236 -14.03692 -13.81720 -13.66515 -13.53948 -13.27594 -13.11523 -12.73119 -12.55275 -12.36118 -12.02598 -11.79644 -11.67512 -11.57347 -11.43972 -11.22239 -11.19052 -10.92503 -10.83057 -10.69045 -10.33692 -10.26282 -10.20896 -10.15153 -9.99391 -9.85676 -9.14674 -9.12825 -8.51384 -7.66442 -7.23135 -6.45684 -3.50413 1.83612 2.43556 2.89060 3.33571 3.36438 3.48487 3.54575 3.58863 4.01278 4.32986 4.38262 4.72078 4.92069 5.04865 5.09204 5.13473 5.25284 5.28408 5.35434 5.40639 5.52942 5.57741 5.67057 5.76895 5.80089 5.87524 5.89872 5.93206 5.97929 6.00587 6.03861 6.05055 6.16756 6.22854 6.32360 6.41030 6.53090 6.62599 6.78856 6.81749 7.15102 7.33340 7.70007 7.82719 7.95857 8.14218 8.26512 8.68710 8.76855 9.49626 9.97204 10.77290 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007966 B = 0.007052 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.876233 B = 3969.503118 C = 6423.985433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.348 6.348 4 C 0.565 3.435 5 O -0.505 6.505 6 C -0.328 4.328 7 C 0.234 3.766 8 C 0.159 3.841 9 N -0.571 5.571 10 C -0.384 4.384 11 H 0.064 0.936 12 C -0.009 4.009 13 N -0.860 5.860 14 Si 1.014 2.986 15 H -0.279 1.279 16 H -0.283 1.283 17 H -0.277 1.277 18 C 0.145 3.855 19 C 0.044 3.956 20 O -0.381 6.381 21 C 0.035 3.965 22 N -0.632 5.632 23 C 0.702 3.298 24 O -0.579 6.579 25 N -0.721 5.721 26 C 0.211 3.789 27 H 0.071 0.929 28 C -0.165 4.165 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.278 0.722 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.030 0.970 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.030 0.970 43 H 0.036 0.964 44 H 0.435 0.565 45 H 0.424 0.576 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 -8.722 -9.173 13.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.265 6.265 4 C 0.409 3.591 5 O -0.393 6.393 6 C -0.338 4.338 7 C 0.124 3.876 8 C 0.031 3.969 9 N -0.290 5.290 10 C -0.512 4.512 11 H 0.081 0.919 12 C -0.217 4.217 13 N -0.495 5.495 14 Si 0.841 3.159 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.203 1.203 18 C 0.019 3.981 19 C -0.034 4.034 20 O -0.300 6.300 21 C -0.062 4.062 22 N -0.276 5.276 23 C 0.402 3.598 24 O -0.456 6.456 25 N -0.382 5.382 26 C 0.106 3.894 27 H 0.089 0.911 28 C -0.223 4.223 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.280 0.720 45 H 0.265 0.735 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.487 -6.869 -9.032 11.871 hybrid contribution 0.901 -1.609 0.226 1.858 sum -2.586 -8.479 -8.806 12.495 Atomic orbital electron populations 1.21787 0.92996 1.02467 1.03498 1.22575 0.95210 0.81574 1.02196 1.86369 1.24792 1.31351 1.84010 1.18592 0.80177 0.88843 0.71472 1.90853 1.60310 1.43054 1.45069 1.18453 1.22562 0.97394 0.95411 1.21668 0.86241 0.82617 0.97053 1.20398 0.92450 0.99821 0.84263 1.43805 1.39266 1.07256 1.38685 1.19861 0.95684 1.02570 1.33050 0.91859 1.25698 0.95169 1.04469 0.96385 1.70793 1.22749 1.21395 1.34540 0.84359 0.76452 0.77210 0.77882 1.20403 1.20940 1.20345 1.21105 0.95070 0.85774 0.96158 1.23340 0.82958 0.96946 1.00194 1.87891 1.26419 1.71867 1.43817 1.22611 0.96018 0.93749 0.93790 1.42553 1.57597 1.14667 1.12775 1.15904 0.78419 0.84159 0.81273 1.90989 1.52026 1.17944 1.84676 1.45291 1.66450 1.16811 1.09606 1.19222 0.95504 0.82356 0.92318 0.91106 1.22355 0.99191 1.02495 0.98278 0.91783 0.90755 0.91287 0.92067 0.91314 0.90506 0.89016 0.91120 0.92859 0.91616 0.95174 0.93074 0.90517 0.95183 0.94487 0.72027 0.73517 0.91622 0.92265 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.12 16 2 C 0.06 0.77 6.10 37.16 0.23 1.00 16 3 O -0.35 -5.60 9.81 -41.17 -0.40 -6.01 16 4 C 0.57 10.10 4.64 31.95 0.15 10.25 16 5 O -0.51 -9.86 16.86 -19.41 -0.33 -10.19 16 6 C -0.33 -5.95 5.13 -104.13 -0.53 -6.48 16 7 C 0.23 4.79 6.40 -81.62 -0.52 4.26 16 8 C 0.16 3.47 5.06 -5.19 -0.03 3.45 16 9 N -0.57 -13.01 2.33 -174.61 -0.41 -13.42 16 10 C -0.38 -9.60 8.42 -15.06 -0.13 -9.73 16 11 H 0.06 1.65 8.06 -52.48 -0.42 1.22 16 12 C -0.01 -0.23 3.98 -17.43 -0.07 -0.30 16 13 N -0.86 -23.05 12.21 55.49 0.68 -22.37 16 14 Si 1.01 23.41 28.57 -169.99 -4.86 18.55 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.43 6.54 56.52 0.37 -6.06 16 18 C 0.14 2.96 6.05 -4.04 -0.02 2.93 16 19 C 0.04 0.83 6.28 37.16 0.23 1.07 16 20 O -0.38 -7.22 9.64 -35.23 -0.34 -7.56 16 21 C 0.04 0.52 11.01 101.05 1.11 1.64 16 22 N -0.63 -13.55 5.07 -12.86 -0.07 -13.62 16 23 C 0.70 14.19 8.63 -87.71 -0.76 13.43 16 24 O -0.58 -13.26 17.94 5.31 0.10 -13.17 16 25 N -0.72 -11.26 5.36 -59.15 -0.32 -11.58 16 26 C 0.21 3.20 3.73 -68.26 -0.25 2.94 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 C -0.16 -2.01 9.17 37.16 0.34 -1.67 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 33 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 34 H 0.08 1.66 5.27 -51.93 -0.27 1.38 16 35 H 0.09 2.23 5.67 -51.93 -0.29 1.94 16 36 H 0.28 7.59 8.10 -40.82 -0.33 7.26 16 37 H 0.05 1.10 8.07 -51.93 -0.42 0.68 16 38 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.44 10.15 4.76 -40.82 -0.19 9.95 16 45 H 0.42 5.33 8.93 -40.82 -0.36 4.96 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.76 7.66 -51.93 -0.40 0.36 16 LS Contribution 393.80 15.07 5.93 5.93 Total: -1.00 -29.94 393.80 -7.32 -37.25 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -7.44 Total: 14.51 kcal Atomic # 6 Polarization: 21.53 SS G_CDS: 0.13 Total: 21.66 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.11 Total: -60.98 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.98 Total: -36.92 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.86 Total: 18.55 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.94 -7.32 -37.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839087260.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.556 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds