Wall clock time and date at job start Sat Apr 11 2020 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42894 * 109.47052 * 2 1 4 4 C 1.34946 * 116.99973 * 179.97438 * 3 2 1 5 5 O 1.21681 * 119.99580 * 0.02562 * 4 3 2 6 6 C 1.41450 * 120.00393 * 180.02562 * 4 3 2 7 7 C 1.35047 * 121.12868 * 78.22971 * 6 4 3 8 8 C 1.50701 * 119.46649 * 359.96045 * 7 6 4 9 9 N 1.46498 * 109.47199 * 115.07819 * 8 7 6 10 10 C 1.36935 * 120.00014 * 84.09043 * 9 8 7 11 11 H 1.08003 * 120.00017 * 209.02280 * 10 9 8 12 12 C 1.38813 * 120.00281 * 29.02743 * 10 9 8 13 13 N 1.31620 * 119.99945 * 41.25934 * 12 10 9 14 14 Si 1.86799 * 120.00129 * 221.26796 * 12 10 9 15 15 H 1.48495 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.46966 * 299.99609 * 14 12 10 17 17 H 1.48501 * 109.46993 * 59.99450 * 14 12 10 18 18 C 1.46498 * 120.00123 * 264.09512 * 9 8 7 19 19 C 1.53000 * 109.46874 * 269.99782 * 18 9 8 20 20 O 1.42905 * 109.47110 * 64.99857 * 19 18 9 21 21 C 1.42901 * 113.99851 * 179.97438 * 20 19 18 22 22 N 1.36564 * 121.07083 * 180.23347 * 7 6 4 23 23 C 1.33896 * 123.67642 * 359.45961 * 22 7 6 24 24 O 1.21562 * 118.92482 * 180.30620 * 23 22 7 25 25 N 1.34770 * 122.15350 * 0.54594 * 23 22 7 26 26 C 1.47262 * 118.41755 * 359.74302 * 25 23 22 27 27 H 1.09002 * 107.95179 * 238.11279 * 26 25 23 28 28 C 1.53001 * 107.93060 * 121.85801 * 26 25 23 29 29 H 1.09001 * 109.46568 * 59.99782 * 1 2 3 30 30 H 1.08997 * 109.47136 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46926 * 300.00122 * 1 2 3 32 32 H 1.08995 * 109.46926 * 239.99878 * 2 1 3 33 33 H 1.09001 * 109.46568 * 120.00218 * 2 1 3 34 34 H 1.09000 * 109.47039 * 355.07590 * 8 7 6 35 35 H 1.09004 * 109.47141 * 235.07799 * 8 7 6 36 36 H 0.97004 * 119.99813 * 5.55136 * 13 12 10 37 37 H 1.09004 * 109.47094 * 29.99467 * 18 9 8 38 38 H 1.08994 * 109.47443 * 150.00155 * 18 9 8 39 39 H 1.09002 * 109.47226 * 184.99641 * 19 18 9 40 40 H 1.09000 * 109.47264 * 304.99792 * 19 18 9 41 41 H 1.09004 * 109.47097 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.47392 * 299.99812 * 21 20 19 43 43 H 1.09000 * 109.47030 * 60.00259 * 21 20 19 44 44 H 0.97001 * 118.16139 * 179.71973 * 22 7 6 45 45 H 0.96997 * 120.79560 * 179.75365 * 25 23 22 46 46 H 1.08997 * 109.47047 * 292.74313 * 28 26 25 47 47 H 1.08995 * 109.46882 * 52.73652 * 28 26 25 48 48 H 1.09001 * 109.47427 * 172.74433 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3442 1.5240 0.0005 5 8 4.0854 0.5590 0.0005 6 6 3.8849 2.8311 0.0011 7 6 3.9335 3.5660 1.1331 8 6 3.4019 2.9847 2.4178 9 7 4.5017 2.8209 3.3716 10 6 4.8988 3.8776 4.1468 11 1 5.9239 3.9481 4.4795 12 6 3.9838 4.8581 4.5050 13 7 2.7628 4.5201 4.8617 14 14 4.4854 6.6573 4.4807 15 1 3.3355 7.4974 4.9014 16 1 5.6205 6.8674 5.4148 17 1 4.8988 7.0374 3.1059 18 6 5.1768 1.5267 3.4961 19 6 4.4696 0.6827 4.5583 20 8 3.1444 0.3772 4.1194 21 6 2.3936 -0.4126 5.0438 22 7 4.4515 4.8296 1.1313 23 6 4.9505 5.4260 0.0413 24 8 5.3955 6.5530 0.1393 25 7 4.9713 4.8195 -1.1621 26 6 4.4297 3.4541 -1.2681 27 1 5.2210 2.8073 -1.6471 28 6 3.3047 3.4729 -2.3049 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.9476 2.0144 2.2169 35 1 2.6533 3.6563 2.8382 36 1 2.5256 3.5838 4.9522 37 1 5.1451 1.0068 2.5385 38 1 6.2145 1.6849 3.7895 39 1 5.0231 -0.2432 4.7145 40 1 4.4230 1.2404 5.4937 41 1 1.4000 -0.6014 4.6371 42 1 2.9041 -1.3613 5.2096 43 1 2.3039 0.1219 5.9894 44 1 4.4618 5.3213 1.9674 45 1 5.3344 5.2713 -1.9397 46 1 2.4699 4.0615 -1.9245 47 1 3.6708 3.9174 -3.2303 48 1 2.9718 2.4531 -2.4984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839087260.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:07 Heat of formation + Delta-G solvation = -139.719802 kcal Electronic energy + Delta-G solvation = -33040.872539 eV Core-core repulsion = 28710.592569 eV Total energy + Delta-G solvation = -4330.279969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.53475 -41.36449 -39.26771 -38.47853 -37.71043 -37.32938 -36.00102 -33.86192 -33.41265 -32.22008 -31.14012 -30.02429 -28.10417 -27.10055 -25.65816 -25.00317 -23.80740 -23.68553 -22.85016 -22.25371 -20.40132 -19.59004 -19.33842 -18.43475 -17.94322 -17.42564 -17.35843 -17.15653 -16.94694 -16.87159 -16.54618 -16.06141 -15.85246 -15.60692 -15.42438 -15.21887 -14.95151 -14.57832 -14.41175 -13.99561 -13.71164 -13.61237 -13.35542 -13.12466 -12.91917 -12.86427 -12.81798 -12.70053 -12.63797 -12.46995 -12.41868 -12.26965 -12.01801 -11.88227 -11.78377 -11.71168 -11.53506 -11.37873 -10.56651 -10.54245 -10.45198 -9.15414 -9.10262 -8.44204 -5.47057 0.29379 1.00525 1.41627 1.50283 1.60813 1.72364 1.90098 2.11572 2.48242 2.56768 2.88107 2.98815 3.36372 3.48608 3.88344 4.00963 4.09349 4.16222 4.16857 4.23817 4.30041 4.36139 4.41901 4.43292 4.47509 4.55487 4.56284 4.64183 4.75352 4.81381 4.84198 4.87987 4.89976 4.93831 4.99925 5.08148 5.10574 5.21720 5.24107 5.49613 5.67311 5.87646 5.88718 6.23835 6.33333 6.43149 6.74913 6.87055 7.17494 7.59005 8.07421 8.76006 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007966 B = 0.007052 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.876233 B = 3969.503118 C = 6423.985433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.351 6.351 4 C 0.567 3.433 5 O -0.522 6.522 6 C -0.304 4.304 7 C 0.205 3.795 8 C 0.174 3.826 9 N -0.581 5.581 10 C -0.377 4.377 11 H 0.050 0.950 12 C -0.037 4.037 13 N -0.883 5.883 14 Si 1.049 2.951 15 H -0.284 1.284 16 H -0.271 1.271 17 H -0.281 1.281 18 C 0.143 3.857 19 C 0.055 3.945 20 O -0.406 6.406 21 C 0.031 3.969 22 N -0.644 5.644 23 C 0.698 3.302 24 O -0.613 6.613 25 N -0.698 5.698 26 C 0.203 3.797 27 H 0.090 0.910 28 C -0.156 4.156 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.266 0.734 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.028 0.972 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.030 0.970 44 H 0.424 0.576 45 H 0.441 0.559 46 H 0.055 0.945 47 H 0.091 0.909 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 -10.205 -11.297 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.267 6.267 4 C 0.411 3.589 5 O -0.412 6.412 6 C -0.314 4.314 7 C 0.098 3.902 8 C 0.046 3.954 9 N -0.301 5.301 10 C -0.506 4.506 11 H 0.068 0.932 12 C -0.242 4.242 13 N -0.519 5.519 14 Si 0.874 3.126 15 H -0.210 1.210 16 H -0.197 1.197 17 H -0.208 1.208 18 C 0.018 3.982 19 C -0.024 4.024 20 O -0.325 6.325 21 C -0.065 4.065 22 N -0.287 5.287 23 C 0.398 3.602 24 O -0.493 6.493 25 N -0.360 5.360 26 C 0.098 3.902 27 H 0.108 0.892 28 C -0.215 4.215 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.265 0.735 45 H 0.285 0.715 46 H 0.074 0.926 47 H 0.110 0.890 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.777 -8.399 -11.204 14.504 hybrid contribution 0.943 -1.334 0.797 1.818 sum -2.834 -9.733 -10.407 14.528 Atomic orbital electron populations 1.21812 0.90501 1.04297 1.03462 1.22915 0.97139 0.79949 1.02344 1.86362 1.23497 1.33443 1.83413 1.18536 0.80819 0.88400 0.71136 1.90852 1.60876 1.43328 1.46124 1.18917 1.19688 0.96808 0.95991 1.21377 0.88515 0.83126 0.97208 1.20084 0.91546 0.99054 0.84737 1.43888 1.39345 1.07747 1.39140 1.19826 0.94820 1.03208 1.32702 0.93187 1.26329 0.95049 1.06367 0.96411 1.70873 1.23557 1.20366 1.37120 0.83837 0.76288 0.74712 0.77714 1.20954 1.19673 1.20779 1.21158 0.95318 0.85136 0.96601 1.23117 0.83503 0.97624 0.98154 1.87845 1.26610 1.72844 1.45201 1.22809 0.96722 0.94042 0.92935 1.42503 1.58464 1.14952 1.12771 1.16045 0.78270 0.83890 0.82010 1.90957 1.53647 1.19383 1.85282 1.45186 1.65475 1.16797 1.08580 1.19493 0.97325 0.81947 0.91433 0.89185 1.22282 0.97539 1.03236 0.98395 0.90803 0.87979 0.92315 0.90619 0.92473 0.90573 0.91784 0.92453 0.93168 0.91331 0.92215 0.95326 0.88731 0.92826 0.95125 0.73463 0.71503 0.92553 0.89005 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.28 71.99 0.74 -1.79 16 2 C 0.05 1.22 6.10 71.99 0.44 1.66 16 3 O -0.35 -10.77 9.81 -58.62 -0.58 -11.34 16 4 C 0.57 19.45 4.64 68.61 0.32 19.77 16 5 O -0.52 -19.60 16.86 19.24 0.32 -19.27 16 6 C -0.30 -10.65 5.13 -19.54 -0.10 -10.75 16 7 C 0.21 8.44 6.40 41.09 0.26 8.70 16 8 C 0.17 7.78 5.06 85.63 0.43 8.21 16 9 N -0.58 -27.09 2.33 -706.34 -1.64 -28.74 16 10 C -0.38 -19.37 8.42 84.03 0.71 -18.66 16 11 H 0.05 2.67 8.06 -2.91 -0.02 2.65 16 12 C -0.04 -1.95 3.98 84.86 0.34 -1.61 16 13 N -0.88 -48.86 12.21 21.65 0.26 -48.60 16 14 Si 1.05 48.72 28.57 68.60 1.96 50.68 16 15 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -13.20 6.54 99.48 0.65 -12.55 16 18 C 0.14 5.89 6.05 86.38 0.52 6.41 16 19 C 0.05 2.04 6.28 71.98 0.45 2.49 16 20 O -0.41 -15.23 9.64 -148.98 -1.44 -16.67 16 21 C 0.03 0.88 11.01 113.37 1.25 2.13 16 22 N -0.64 -27.92 5.07 -313.37 -1.59 -29.51 16 23 C 0.70 27.88 8.63 179.33 1.55 29.43 16 24 O -0.61 -28.07 17.94 -3.91 -0.07 -28.14 16 25 N -0.70 -20.41 5.36 -459.34 -2.46 -22.87 16 26 C 0.20 5.60 3.73 44.36 0.17 5.77 16 27 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 28 C -0.16 -3.27 9.17 71.98 0.66 -2.61 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.62 8.13 -2.39 -0.02 1.60 16 33 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 34 H 0.08 3.35 5.27 -2.39 -0.01 3.34 16 35 H 0.06 3.26 5.67 -2.38 -0.01 3.24 16 36 H 0.27 15.08 8.10 -92.71 -0.75 14.33 16 37 H 0.05 2.07 8.07 -2.38 -0.02 2.05 16 38 H 0.07 2.73 8.04 -2.39 -0.02 2.71 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 41 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.03 0.89 8.14 -2.39 -0.02 0.88 16 44 H 0.42 20.25 4.76 -92.71 -0.44 19.81 16 45 H 0.44 9.88 8.93 -92.71 -0.83 9.05 16 46 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.07 1.44 7.66 -2.39 -0.02 1.42 16 Total: -1.00 -66.41 393.80 2.19 -64.22 By element: Atomic # 1 Polarization: 41.41 SS G_CDS: -0.32 Total: 41.09 kcal Atomic # 6 Polarization: 41.42 SS G_CDS: 7.74 Total: 49.16 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -5.43 Total: -129.71 kcal Atomic # 8 Polarization: -73.67 SS G_CDS: -1.76 Total: -75.43 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 1.96 Total: 50.68 kcal Total: -66.41 2.19 -64.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839087260.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.502 kcal (2) G-P(sol) polarization free energy of solvation -66.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds