Wall clock time and date at job start Sat Apr 11 2020 06:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46709 * 2 1 4 4 C 1.36545 * 127.14058 * 90.02236 * 3 2 1 5 5 S 1.76195 * 126.48344 * 0.02562 * 4 3 2 6 6 N 1.31280 * 107.03099 * 179.73555 * 4 3 2 7 7 N 1.28525 * 109.85761 * 0.27153 * 6 4 3 8 8 C 1.30300 * 110.07877 * 359.97438 * 7 6 4 9 9 C 1.50704 * 126.34227 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46670 * 89.98061 * 9 8 7 11 11 N 1.46501 * 109.46553 * 179.97438 * 10 9 8 12 12 C 1.34783 * 119.99927 * 179.97438 * 11 10 9 13 13 O 1.21583 * 119.99609 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00067 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99751 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47190 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46950 * 300.00159 * 16 15 14 18 18 C 1.53004 * 109.46642 * 60.00001 * 16 15 14 19 19 C 1.50690 * 109.47133 * 180.02562 * 16 15 14 20 20 H 1.08004 * 120.00601 * 0.02562 * 19 16 15 21 21 C 1.37886 * 119.99766 * 180.02562 * 19 16 15 22 22 N 1.31513 * 119.99879 * 359.97438 * 21 19 16 23 23 Si 1.86801 * 119.99864 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46970 * 60.00056 * 23 21 19 25 25 H 1.48496 * 109.46918 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47212 * 300.00162 * 23 21 19 27 27 H 1.09000 * 109.47556 * 299.99365 * 1 2 3 28 28 H 1.08999 * 109.47199 * 60.00186 * 1 2 3 29 29 H 1.09006 * 109.46965 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47299 * 240.00303 * 2 1 3 31 31 H 1.08999 * 109.47199 * 119.99814 * 2 1 3 32 32 H 1.41005 * 99.99931 * 269.70773 * 5 4 3 33 33 H 1.09000 * 109.46964 * 209.97822 * 9 8 7 34 34 H 1.08996 * 109.46910 * 329.98152 * 9 8 7 35 35 H 1.09000 * 109.47232 * 299.99597 * 10 9 8 36 36 H 1.08996 * 109.47380 * 60.00378 * 10 9 8 37 37 H 0.97000 * 120.00255 * 0.02562 * 11 10 9 38 38 H 0.96997 * 120.00021 * 359.97438 * 14 12 11 39 39 H 1.08992 * 109.47452 * 299.99722 * 15 14 12 40 40 H 1.08997 * 109.47078 * 60.00096 * 15 14 12 41 41 H 1.09009 * 109.46935 * 60.00101 * 17 16 15 42 42 H 1.09001 * 109.46859 * 179.97438 * 17 16 15 43 43 H 1.08992 * 109.47180 * 299.99876 * 17 16 15 44 44 H 1.09000 * 109.47236 * 60.00141 * 18 16 15 45 45 H 1.09001 * 109.47072 * 179.97438 * 18 16 15 46 46 H 1.09000 * 109.46906 * 300.00149 * 18 16 15 47 47 H 0.96996 * 119.99754 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2934 2.1584 1.0885 5 16 2.1291 1.6896 2.7789 6 7 2.7095 3.3188 0.6371 7 7 2.7052 3.3144 -0.6481 8 6 2.2902 2.1610 -1.0901 9 6 2.1432 1.7586 -2.5349 10 6 3.4512 1.1354 -3.0263 11 7 3.3081 0.7436 -4.4307 12 6 4.3412 0.1699 -5.0789 13 8 5.3917 -0.0229 -4.4980 14 7 4.2097 -0.1900 -6.3711 15 6 5.3324 -0.8141 -7.0754 16 6 4.9223 -1.1220 -8.5170 17 6 3.7274 -2.0775 -8.5143 18 6 4.5347 0.1775 -9.2255 19 6 6.0770 -1.7645 -9.2414 20 1 7.0100 -1.9366 -8.7252 21 6 5.9424 -2.1329 -10.5633 22 7 4.8063 -1.9238 -11.1917 23 14 7.3740 -2.9287 -11.4614 24 1 7.7499 -4.1902 -10.7740 25 1 6.9763 -3.2265 -12.8608 26 1 8.5340 -2.0016 -11.4636 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.7991 2.0932 3.0168 33 1 1.3364 1.0318 -2.6294 34 1 1.9118 2.6384 -3.1353 35 1 4.2580 1.8622 -2.9319 36 1 3.6826 0.2556 -2.4259 37 1 2.4701 0.8978 -4.8942 38 1 3.3715 -0.0365 -6.8344 39 1 6.1838 -0.1336 -7.0770 40 1 5.6083 -1.7401 -6.5709 41 1 2.8920 -1.6130 -7.9902 42 1 3.4350 -2.2965 -9.5413 43 1 4.0035 -3.0032 -8.0095 44 1 5.3860 0.8582 -9.2274 45 1 4.2430 -0.0417 -10.2526 46 1 3.6994 0.6418 -8.7013 47 1 4.7118 -2.1826 -12.1218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854144786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:16 Heat of formation + Delta-G solvation = 42.463006 kcal Electronic energy + Delta-G solvation = -27055.070967 eV Core-core repulsion = 23207.736659 eV Total energy + Delta-G solvation = -3847.334308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.44631 -39.67129 -36.78116 -36.37207 -35.42621 -33.34068 -32.55039 -31.22857 -30.81395 -29.13455 -25.73574 -25.71461 -25.21172 -24.74084 -23.48386 -23.05290 -21.24101 -20.61725 -18.80882 -18.74873 -18.14261 -17.16695 -16.95659 -16.07160 -15.83918 -15.74558 -15.29480 -15.14955 -14.73637 -14.32300 -14.30522 -14.03878 -13.79412 -13.45587 -13.07555 -12.89370 -12.87229 -12.56766 -12.26119 -12.18488 -12.00148 -11.95693 -11.71810 -11.37486 -11.19909 -10.94503 -10.84892 -10.73202 -10.70934 -10.39149 -10.22026 -9.87037 -9.64713 -9.64005 -9.32231 -9.10447 -8.94021 -8.80674 -8.42192 -8.23315 -6.02609 -4.12400 0.46461 0.85590 1.79089 2.02139 2.41310 2.93918 3.30182 3.34330 3.38472 3.58044 3.80667 3.92870 4.21132 4.24158 4.38522 4.47174 4.53893 4.66584 4.73591 4.85085 4.95183 4.96952 5.21463 5.24202 5.31636 5.46587 5.57466 5.67847 6.14239 6.18920 6.35405 6.46444 6.50723 6.78119 6.81184 6.88262 7.02106 7.06458 7.24200 7.38266 7.54948 7.69318 8.00433 8.11525 8.13152 8.36661 8.43172 8.86958 8.98492 9.53256 10.98770 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028940 B = 0.001738 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.274542 B =16103.503638 C =16220.862839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.091 3.909 3 N -0.455 5.455 4 C 0.141 3.859 5 S -0.006 6.006 6 N -0.237 5.237 7 N -0.282 5.282 8 C 0.209 3.791 9 C -0.048 4.048 10 C 0.148 3.852 11 N -0.754 5.754 12 C 0.699 3.301 13 O -0.597 6.597 14 N -0.731 5.731 15 C 0.150 3.850 16 C 0.056 3.944 17 C -0.129 4.129 18 C -0.130 4.130 19 C -0.505 4.505 20 H 0.057 0.943 21 C 0.066 3.934 22 N -0.886 5.886 23 Si 0.894 3.106 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.395 0.605 38 H 0.394 0.606 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.005 0.995 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.027 0.973 45 H 0.085 0.915 46 H 0.006 0.994 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.632 3.870 22.541 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.031 4.031 3 N -0.148 5.148 4 C -0.234 4.234 5 S 0.144 5.856 6 N -0.081 5.081 7 N -0.125 5.125 8 C -0.060 4.060 9 C -0.089 4.089 10 C 0.022 3.978 11 N -0.412 5.412 12 C 0.398 3.602 13 O -0.475 6.475 14 N -0.386 5.386 15 C 0.027 3.973 16 C 0.055 3.945 17 C -0.187 4.187 18 C -0.188 4.188 19 C -0.544 4.544 20 H 0.075 0.925 21 C -0.135 4.135 22 N -0.525 5.525 23 Si 0.722 3.278 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.228 0.772 38 H 0.228 0.772 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.103 0.897 46 H 0.025 0.975 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.061 4.703 23.739 27.500 hybrid contribution -1.325 -1.031 -1.713 2.399 sum -14.386 3.673 22.026 26.563 Atomic orbital electron populations 1.22157 0.93308 1.04132 1.03020 1.22148 0.96108 0.78336 1.06549 1.47184 1.47889 1.13990 1.05709 1.25886 1.10627 0.92443 0.94448 1.87114 1.20949 1.79531 0.98025 1.74817 1.14028 1.16331 1.02960 1.74200 1.17756 1.17528 1.02969 1.24871 1.00693 0.88619 0.91784 1.20310 0.99366 1.03381 0.85800 1.20924 0.95742 0.99558 0.81562 1.44992 1.16008 1.67978 1.12235 1.16020 0.83460 0.78586 0.82111 1.90904 1.27545 1.61619 1.67471 1.45500 1.18416 1.65049 1.09591 1.21603 0.86452 0.95705 0.93554 1.18366 0.94924 0.93137 0.88072 1.21817 0.96097 0.97957 1.02821 1.21820 0.96959 0.96568 1.03406 1.20943 0.98049 1.39500 0.95895 0.92457 1.24881 0.95776 0.95541 0.97348 1.69790 1.24091 1.47587 1.11031 0.86626 0.82723 0.79904 0.78565 1.20291 1.21362 1.20268 0.92213 0.91558 0.89388 0.87555 0.87118 0.93336 0.88874 0.86913 0.90638 0.91831 0.77157 0.77154 0.92876 0.92938 0.97597 0.89655 0.95477 0.95423 0.89657 0.97546 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.52 10.24 37.16 0.38 -0.14 16 2 C 0.09 0.41 6.48 -4.04 -0.03 0.38 16 3 N -0.45 -3.72 2.81 -113.54 -0.32 -4.04 16 4 C 0.14 1.40 8.37 -88.34 -0.74 0.66 16 5 S -0.01 -0.04 25.77 -107.50 -2.77 -2.81 16 6 N -0.24 -3.13 12.23 30.68 0.38 -2.76 16 7 N -0.28 -3.70 12.17 33.00 0.40 -3.30 16 8 C 0.21 2.03 7.32 -153.99 -1.13 0.90 16 9 C -0.05 -0.34 5.54 -27.88 -0.15 -0.49 16 10 C 0.15 1.52 5.66 -4.04 -0.02 1.50 16 11 N -0.75 -8.60 5.56 -65.23 -0.36 -8.97 16 12 C 0.70 11.80 8.57 -86.91 -0.74 11.06 16 13 O -0.60 -12.73 16.34 5.29 0.09 -12.64 16 14 N -0.73 -12.52 4.96 -65.23 -0.32 -12.85 16 15 C 0.15 3.15 4.50 -4.04 -0.02 3.13 16 16 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 17 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 18 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 19 C -0.51 -13.07 8.01 -34.44 -0.28 -13.35 16 20 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 21 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 22 N -0.89 -23.28 9.35 55.43 0.52 -22.76 16 23 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.11 0.39 7.91 -51.94 -0.41 -0.02 16 31 H 0.11 0.39 7.86 -51.93 -0.41 -0.02 16 32 H 0.10 0.48 9.55 96.90 0.93 1.41 16 33 H 0.09 0.40 7.95 -51.93 -0.41 -0.02 16 34 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.39 3.21 8.49 -40.82 -0.35 2.86 16 38 H 0.39 5.91 6.18 -40.82 -0.25 5.66 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.01 0.10 6.86 -51.92 -0.36 -0.26 16 42 H 0.08 2.07 6.07 -51.93 -0.32 1.76 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.09 6.07 -51.93 -0.32 1.77 16 46 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 47 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -33.09 397.83 -9.74 -42.83 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.02 Total: 4.37 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.30 Total: 1.38 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.29 Total: -54.67 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.77 Total: -2.81 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.09 -9.74 -42.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854144786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.290 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds