Wall clock time and date at job start Sat Apr 11 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46709 * 2 1 4 4 C 1.36545 * 127.14058 * 90.02236 * 3 2 1 5 5 S 1.76195 * 126.48344 * 0.02562 * 4 3 2 6 6 N 1.31280 * 107.03099 * 179.73555 * 4 3 2 7 7 N 1.28525 * 109.85761 * 0.27153 * 6 4 3 8 8 C 1.30300 * 110.07877 * 359.97438 * 7 6 4 9 9 C 1.50704 * 126.34227 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46670 * 89.98061 * 9 8 7 11 11 N 1.46501 * 109.46553 * 179.97438 * 10 9 8 12 12 C 1.34783 * 119.99927 * 179.97438 * 11 10 9 13 13 O 1.21583 * 119.99609 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00067 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99751 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47190 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46950 * 300.00159 * 16 15 14 18 18 C 1.53004 * 109.46642 * 60.00001 * 16 15 14 19 19 C 1.50690 * 109.47133 * 180.02562 * 16 15 14 20 20 H 1.08004 * 120.00601 * 0.02562 * 19 16 15 21 21 C 1.37886 * 119.99766 * 180.02562 * 19 16 15 22 22 N 1.31513 * 119.99879 * 359.97438 * 21 19 16 23 23 Si 1.86801 * 119.99864 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46970 * 60.00056 * 23 21 19 25 25 H 1.48496 * 109.46918 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47212 * 300.00162 * 23 21 19 27 27 H 1.09000 * 109.47556 * 299.99365 * 1 2 3 28 28 H 1.08999 * 109.47199 * 60.00186 * 1 2 3 29 29 H 1.09006 * 109.46965 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47299 * 240.00303 * 2 1 3 31 31 H 1.08999 * 109.47199 * 119.99814 * 2 1 3 32 32 H 1.41005 * 99.99931 * 269.70773 * 5 4 3 33 33 H 1.09000 * 109.46964 * 209.97822 * 9 8 7 34 34 H 1.08996 * 109.46910 * 329.98152 * 9 8 7 35 35 H 1.09000 * 109.47232 * 299.99597 * 10 9 8 36 36 H 1.08996 * 109.47380 * 60.00378 * 10 9 8 37 37 H 0.97000 * 120.00255 * 0.02562 * 11 10 9 38 38 H 0.96997 * 120.00021 * 359.97438 * 14 12 11 39 39 H 1.08992 * 109.47452 * 299.99722 * 15 14 12 40 40 H 1.08997 * 109.47078 * 60.00096 * 15 14 12 41 41 H 1.09009 * 109.46935 * 60.00101 * 17 16 15 42 42 H 1.09001 * 109.46859 * 179.97438 * 17 16 15 43 43 H 1.08992 * 109.47180 * 299.99876 * 17 16 15 44 44 H 1.09000 * 109.47236 * 60.00141 * 18 16 15 45 45 H 1.09001 * 109.47072 * 179.97438 * 18 16 15 46 46 H 1.09000 * 109.46906 * 300.00149 * 18 16 15 47 47 H 0.96996 * 119.99754 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2934 2.1584 1.0885 5 16 2.1291 1.6896 2.7789 6 7 2.7095 3.3188 0.6371 7 7 2.7052 3.3144 -0.6481 8 6 2.2902 2.1610 -1.0901 9 6 2.1432 1.7586 -2.5349 10 6 3.4512 1.1354 -3.0263 11 7 3.3081 0.7436 -4.4307 12 6 4.3412 0.1699 -5.0789 13 8 5.3917 -0.0229 -4.4980 14 7 4.2097 -0.1900 -6.3711 15 6 5.3324 -0.8141 -7.0754 16 6 4.9223 -1.1220 -8.5170 17 6 3.7274 -2.0775 -8.5143 18 6 4.5347 0.1775 -9.2255 19 6 6.0770 -1.7645 -9.2414 20 1 7.0100 -1.9366 -8.7252 21 6 5.9424 -2.1329 -10.5633 22 7 4.8063 -1.9238 -11.1917 23 14 7.3740 -2.9287 -11.4614 24 1 7.7499 -4.1902 -10.7740 25 1 6.9763 -3.2265 -12.8608 26 1 8.5340 -2.0016 -11.4636 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.7991 2.0932 3.0168 33 1 1.3364 1.0318 -2.6294 34 1 1.9118 2.6384 -3.1353 35 1 4.2580 1.8622 -2.9319 36 1 3.6826 0.2556 -2.4259 37 1 2.4701 0.8978 -4.8942 38 1 3.3715 -0.0365 -6.8344 39 1 6.1838 -0.1336 -7.0770 40 1 5.6083 -1.7401 -6.5709 41 1 2.8920 -1.6130 -7.9902 42 1 3.4350 -2.2965 -9.5413 43 1 4.0035 -3.0032 -8.0095 44 1 5.3860 0.8582 -9.2274 45 1 4.2430 -0.0417 -10.2526 46 1 3.6994 0.6418 -8.7013 47 1 4.7118 -2.1826 -12.1218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854144786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:15 Heat of formation + Delta-G solvation = 20.879648 kcal Electronic energy + Delta-G solvation = -27056.006891 eV Core-core repulsion = 23207.736659 eV Total energy + Delta-G solvation = -3848.270233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.16241 -41.03090 -38.31789 -37.09642 -36.43712 -34.98432 -33.59652 -32.49079 -31.66818 -30.03013 -27.51479 -27.41998 -26.72860 -25.48011 -24.43593 -23.68731 -22.15418 -21.69785 -20.55717 -19.61139 -19.18133 -17.78389 -17.73450 -17.69904 -17.06890 -16.79987 -16.61189 -16.06027 -15.80133 -15.44320 -15.32269 -15.17660 -14.67500 -14.51527 -14.43704 -14.20454 -13.94795 -13.44975 -13.27020 -13.17346 -13.05506 -12.83734 -12.69674 -12.60415 -12.58929 -12.48903 -12.26476 -12.20428 -12.11263 -11.64166 -11.44130 -11.40033 -11.29902 -11.12391 -10.67507 -10.41135 -10.39087 -10.30752 -9.65886 -9.46657 -7.99738 -6.14690 -0.11916 0.19490 1.22247 1.39644 1.45647 1.47140 1.53356 1.73219 1.83865 2.22036 2.48119 3.08606 3.23874 3.49619 3.57200 3.68334 3.75771 3.95132 4.10283 4.26357 4.28832 4.39807 4.46169 4.57547 4.58371 4.72459 4.76072 4.84717 4.88702 4.97070 5.04679 5.10795 5.13257 5.14762 5.24821 5.41266 5.44277 5.58991 5.66276 5.70432 5.71883 6.09815 6.20236 6.26205 6.47332 6.89358 7.19773 7.37160 7.52601 7.65785 8.98766 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028940 B = 0.001738 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.274542 B =16103.503638 C =16220.862839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 N -0.448 5.448 4 C 0.140 3.860 5 S 0.001 5.999 6 N -0.285 5.285 7 N -0.325 5.325 8 C 0.209 3.791 9 C -0.034 4.034 10 C 0.153 3.847 11 N -0.728 5.728 12 C 0.697 3.303 13 O -0.644 6.644 14 N -0.723 5.723 15 C 0.167 3.833 16 C 0.051 3.949 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.528 4.528 20 H 0.043 0.957 21 C 0.028 3.972 22 N -0.898 5.898 23 Si 0.943 3.057 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.279 1.279 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.416 0.584 38 H 0.407 0.593 39 H 0.032 0.968 40 H 0.036 0.964 41 H 0.040 0.960 42 H 0.061 0.939 43 H 0.018 0.982 44 H 0.015 0.985 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.923 3.215 23.220 28.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.039 4.039 3 N -0.141 5.141 4 C -0.236 4.236 5 S 0.151 5.849 6 N -0.129 5.129 7 N -0.167 5.167 8 C -0.062 4.062 9 C -0.074 4.074 10 C 0.027 3.973 11 N -0.386 5.386 12 C 0.397 3.603 13 O -0.526 6.526 14 N -0.378 5.378 15 C 0.043 3.957 16 C 0.050 3.950 17 C -0.176 4.176 18 C -0.178 4.178 19 C -0.567 4.567 20 H 0.061 0.939 21 C -0.172 4.172 22 N -0.536 5.536 23 Si 0.770 3.230 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.205 1.205 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.090 0.910 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.254 0.746 38 H 0.244 0.756 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.037 0.963 44 H 0.034 0.966 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.428 4.063 24.416 29.166 hybrid contribution -0.650 -0.842 -1.818 2.107 sum -16.079 3.221 22.598 27.920 Atomic orbital electron populations 1.22149 0.91899 1.05301 1.02750 1.22526 0.97226 0.76424 1.07719 1.47425 1.46982 1.14893 1.04756 1.26320 1.09260 0.91984 0.96052 1.87055 1.22741 1.79056 0.96089 1.74715 1.16287 1.18491 1.03390 1.74073 1.19500 1.19795 1.03373 1.25199 0.99880 0.88128 0.92955 1.20311 0.98361 1.04579 0.84163 1.20885 0.96912 0.98883 0.80652 1.44688 1.15436 1.65979 1.12493 1.16153 0.83809 0.78535 0.81802 1.90882 1.29866 1.63454 1.68378 1.45149 1.17907 1.64989 1.09799 1.21111 0.87060 0.94721 0.92835 1.18369 0.94423 0.93502 0.88682 1.21647 0.96719 0.97622 1.01643 1.21663 0.97645 0.96116 1.02340 1.21243 0.98720 1.40153 0.96542 0.93855 1.25430 0.97648 0.96114 0.97966 1.69891 1.24898 1.47801 1.11027 0.85855 0.80430 0.78998 0.77735 1.20262 1.20848 1.20472 0.92717 0.91612 0.87438 0.86334 0.86106 0.90983 0.85088 0.85808 0.93454 0.92113 0.74633 0.75554 0.94931 0.94561 0.94102 0.92012 0.96328 0.96593 0.91957 0.94172 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.50 10.24 71.98 0.74 0.24 16 2 C 0.08 0.51 6.48 86.38 0.56 1.07 16 3 N -0.45 -6.63 2.81 -513.13 -1.44 -8.08 16 4 C 0.14 2.69 8.37 179.55 1.50 4.20 16 5 S 0.00 0.02 25.77 -56.49 -1.46 -1.44 16 6 N -0.28 -7.64 12.23 -56.85 -0.70 -8.34 16 7 N -0.33 -8.59 12.17 -49.52 -0.60 -9.19 16 8 C 0.21 3.80 7.32 137.63 1.01 4.80 16 9 C -0.03 -0.39 5.54 29.85 0.17 -0.22 16 10 C 0.15 2.88 5.66 86.38 0.49 3.37 16 11 N -0.73 -14.71 5.56 -478.53 -2.66 -17.37 16 12 C 0.70 22.53 8.57 179.05 1.53 24.06 16 13 O -0.64 -27.40 16.34 -3.98 -0.06 -27.47 16 14 N -0.72 -23.44 4.96 -478.54 -2.37 -25.81 16 15 C 0.17 6.99 4.50 86.38 0.39 7.38 16 16 C 0.05 2.29 0.50 -52.93 -0.03 2.26 16 17 C -0.12 -5.01 8.08 71.98 0.58 -4.43 16 18 C -0.12 -5.17 8.08 71.98 0.58 -4.58 16 19 C -0.53 -27.57 8.01 25.60 0.21 -27.36 16 20 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 21 C 0.03 1.47 5.15 84.66 0.44 1.91 16 22 N -0.90 -47.00 9.35 21.45 0.20 -46.79 16 23 Si 0.94 42.27 29.54 68.60 2.03 44.29 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 27 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.11 -0.06 8.14 -2.38 -0.02 -0.08 16 30 H 0.12 0.49 7.91 -2.39 -0.02 0.47 16 31 H 0.12 0.54 7.86 -2.39 -0.02 0.52 16 32 H 0.13 0.92 9.55 73.80 0.70 1.63 16 33 H 0.13 0.52 7.95 -2.39 -0.02 0.50 16 34 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.42 5.08 8.49 -92.71 -0.79 4.29 16 38 H 0.41 10.88 6.18 -92.71 -0.57 10.31 16 39 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.04 1.40 6.86 -2.38 -0.02 1.38 16 42 H 0.06 2.94 6.07 -2.39 -0.01 2.92 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 46 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 47 H 0.26 13.17 8.31 -92.71 -0.77 12.40 16 Total: -1.00 -74.58 397.83 1.45 -73.13 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.36 Total: 14.37 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 8.16 Total: 12.69 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -7.58 Total: -115.58 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.06 Total: -27.47 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -1.46 Total: -1.44 kcal Total: -74.58 1.45 -73.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854144786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.014 kcal (2) G-P(sol) polarization free energy of solvation -74.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds