Wall clock time and date at job start Sat Apr 11 2020 06:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.53000 * 109.47284 * 240.00193 * 2 1 3 5 5 O 1.45194 * 109.47039 * 120.00091 * 2 1 3 6 6 C 1.34638 * 117.00320 * 60.00284 * 5 2 1 7 7 O 1.21516 * 119.99375 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00641 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00099 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.91109 * 23.75176 * 9 8 6 11 11 C 1.53787 * 113.61210 * 155.00440 * 9 8 6 12 12 C 1.53779 * 87.07963 * 139.97940 * 11 9 8 13 13 H 1.08999 * 113.61062 * 219.93155 * 12 11 9 14 14 C 1.50704 * 113.61294 * 89.11707 * 12 11 9 15 15 O 1.21278 * 120.00176 * 359.97438 * 14 12 11 16 16 N 1.34779 * 119.99394 * 179.97438 * 14 12 11 17 17 C 1.46502 * 119.99401 * 179.97438 * 16 14 12 18 18 C 1.50703 * 109.47061 * 179.97438 * 17 16 14 19 19 O 1.21287 * 119.99827 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00035 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99780 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00183 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99605 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00140 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99603 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47396 * 60.00226 * 25 23 21 27 27 H 1.48503 * 109.47121 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47529 * 299.99899 * 25 23 21 29 29 C 1.53779 * 87.08402 * 334.56577 * 12 11 9 30 30 H 1.08996 * 109.47601 * 299.99573 * 1 2 3 31 31 H 1.09008 * 109.47003 * 59.99972 * 1 2 3 32 32 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47346 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47568 * 300.00538 * 3 2 1 35 35 H 1.09002 * 109.46886 * 59.99891 * 3 2 1 36 36 H 1.09001 * 109.47166 * 300.00086 * 4 2 1 37 37 H 1.09008 * 109.47235 * 59.99977 * 4 2 1 38 38 H 1.09005 * 109.47250 * 179.97438 * 4 2 1 39 39 H 0.97002 * 119.99411 * 0.02562 * 8 6 5 40 40 H 1.08997 * 113.61028 * 254.52900 * 11 9 8 41 41 H 1.09000 * 113.61529 * 25.43039 * 11 9 8 42 42 H 0.96995 * 120.00618 * 359.97438 * 16 14 12 43 43 H 1.09002 * 109.47234 * 299.99220 * 17 16 14 44 44 H 1.09003 * 109.47660 * 59.99777 * 17 16 14 45 45 H 0.97004 * 120.00178 * 359.97438 * 20 18 17 46 46 H 0.97006 * 120.00074 * 179.97438 * 24 23 21 47 47 H 1.09002 * 113.61557 * 270.88569 * 29 12 11 48 48 H 1.09004 * 113.61501 * 139.97990 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0680 -2.6658 2.4165 9 6 1.6739 -4.0669 2.5829 10 1 1.4197 -4.5511 1.6401 11 6 2.6474 -4.8817 3.4510 12 6 1.4101 -5.5543 4.0685 13 1 1.4909 -5.7139 5.1438 14 6 0.9589 -6.7859 3.3264 15 8 1.5619 -7.1551 2.3411 16 7 -0.1148 -7.4770 3.7578 17 6 -0.5537 -8.6739 3.0360 18 6 -1.7651 -9.2558 3.7180 19 8 -2.2169 -8.7234 4.7097 20 7 -2.3462 -10.3679 3.2260 21 6 -3.4486 -10.8969 3.8463 22 1 -3.8509 -10.4229 4.7292 23 6 -4.0481 -12.0431 3.3387 24 7 -3.5588 -12.6196 2.2639 25 14 -5.5495 -12.7643 4.1841 26 1 -6.6437 -11.7603 4.1913 27 1 -5.9956 -13.9766 3.4514 28 1 -5.2034 -13.1293 5.5814 29 6 0.6283 -4.2855 3.6892 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1301 -0.7208 -1.2495 39 1 2.6276 -2.2369 3.0828 40 1 3.2757 -5.5644 2.8790 41 1 3.2137 -4.2757 4.1583 42 1 -0.5969 -7.1819 4.5460 43 1 -0.8073 -8.4070 2.0100 44 1 0.2495 -9.4108 3.0318 45 1 -1.9851 -10.7935 2.4327 46 1 -3.9771 -13.4200 1.9098 47 1 0.6426 -3.5165 4.4617 48 1 -0.3734 -4.4870 3.3096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854448717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:18 Heat of formation + Delta-G solvation = -142.013818 kcal Electronic energy + Delta-G solvation = -29365.618580 eV Core-core repulsion = 25035.239134 eV Total energy + Delta-G solvation = -4330.379445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15443 -40.40219 -38.63969 -37.83485 -36.76198 -34.55980 -34.46305 -33.68786 -33.28496 -31.39173 -28.28203 -27.72989 -27.65450 -25.97317 -25.88923 -24.40400 -22.68768 -21.33599 -20.36529 -19.73119 -19.21099 -18.33410 -18.03943 -17.45770 -16.74114 -16.35148 -16.14189 -15.79373 -15.34985 -15.12174 -14.99567 -14.70456 -14.61224 -14.26274 -13.95098 -13.72074 -13.70618 -13.26644 -12.96744 -12.82916 -12.62235 -12.42146 -12.23539 -12.19898 -12.19090 -12.14238 -11.90961 -11.73767 -11.63671 -11.56905 -11.11141 -10.98443 -10.77297 -10.62484 -10.51269 -10.32135 -10.23985 -9.72243 -9.63499 -9.34301 -8.82847 -8.64669 -8.11085 -6.52050 -3.94279 1.94400 2.63285 2.71625 3.13341 3.20601 3.22419 3.30426 3.72960 3.88198 4.10318 4.21596 4.27973 4.40614 4.44729 4.55617 4.59500 4.68053 4.86828 5.14426 5.14941 5.16361 5.22262 5.22694 5.33615 5.37773 5.38493 5.46112 5.56408 5.59296 5.65579 5.67698 5.77870 5.84440 5.89912 5.94908 6.01693 6.05969 6.06800 6.26156 6.31328 6.64733 7.20548 7.45103 7.77241 7.90861 8.19274 8.39444 8.44996 9.03603 9.38250 9.86038 10.64665 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.001789 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.514529 B =15645.730061 C =16332.017786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.367 6.367 6 C 0.648 3.352 7 O -0.563 6.563 8 N -0.699 5.699 9 C 0.140 3.860 10 H 0.126 0.874 11 C -0.124 4.124 12 C -0.134 4.134 13 H 0.111 0.889 14 C 0.526 3.474 15 O -0.545 6.545 16 N -0.702 5.702 17 C 0.108 3.892 18 C 0.427 3.573 19 O -0.598 6.598 20 N -0.548 5.548 21 C -0.306 4.306 22 H 0.105 0.895 23 C 0.026 3.974 24 N -0.894 5.894 25 Si 0.934 3.066 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.272 1.272 29 C -0.138 4.138 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.405 0.595 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.412 0.588 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.396 0.604 46 H 0.275 0.725 47 H 0.097 0.903 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.780 24.453 -1.511 28.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.282 6.282 6 C 0.401 3.599 7 O -0.451 6.451 8 N -0.357 5.357 9 C 0.036 3.964 10 H 0.143 0.857 11 C -0.162 4.162 12 C -0.156 4.156 13 H 0.129 0.871 14 C 0.311 3.689 15 O -0.423 6.423 16 N -0.356 5.356 17 C -0.020 4.020 18 C 0.213 3.787 19 O -0.485 6.485 20 N -0.183 5.183 21 C -0.436 4.436 22 H 0.123 0.877 23 C -0.177 4.177 24 N -0.534 5.534 25 Si 0.761 3.239 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.198 1.198 29 C -0.177 4.177 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.239 0.761 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.250 0.750 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.230 0.770 46 H 0.085 0.915 47 H 0.115 0.885 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.451 24.129 -2.164 27.709 hybrid contribution -0.607 -0.427 0.542 0.919 sum 12.844 23.702 -1.622 27.007 Atomic orbital electron populations 1.22522 0.93900 1.05259 1.02462 1.22066 0.94441 0.91436 0.82114 1.21859 1.02179 0.92576 1.03114 1.22525 1.01497 1.03681 0.96441 1.86286 1.71655 1.23766 1.46536 1.18195 0.78887 0.80471 0.82342 1.90935 1.40728 1.70261 1.43209 1.44803 1.55274 1.12257 1.23401 1.22740 0.95521 0.78310 0.99810 0.85663 1.23245 0.96235 0.98232 0.98513 1.22174 0.98816 0.93058 1.01534 0.87066 1.19946 0.80188 0.84132 0.84594 1.90696 1.55572 1.69432 1.26587 1.45657 1.30206 1.27519 1.32193 1.20974 0.96959 0.87722 0.96312 1.19736 0.87103 0.84216 0.87644 1.90492 1.66777 1.62834 1.28361 1.41794 1.26649 1.22775 1.27072 1.19684 1.04570 1.08199 1.11122 0.87714 1.25331 0.99530 0.96599 0.96233 1.69607 1.41319 1.20923 1.21565 0.85865 0.80771 0.78209 0.79068 1.19778 1.20847 1.19776 1.23471 0.99621 0.95724 0.98892 0.92189 0.91130 0.89240 0.91518 0.90135 0.91510 0.89247 0.91128 0.92205 0.76050 0.88803 0.88732 0.75021 0.89785 0.89788 0.77018 0.91515 0.88451 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 8.37 37.16 0.31 -1.34 16 2 C 0.14 1.20 1.13 -90.62 -0.10 1.09 16 3 C -0.14 -0.83 8.85 37.16 0.33 -0.50 16 4 C -0.18 -1.64 8.37 37.16 0.31 -1.33 16 5 O -0.37 -3.77 9.94 -40.32 -0.40 -4.17 16 6 C 0.65 7.58 8.06 54.05 0.44 8.01 16 7 O -0.56 -8.24 11.48 -19.28 -0.22 -8.46 16 8 N -0.70 -6.40 5.36 -57.93 -0.31 -6.71 16 9 C 0.14 1.45 3.89 -67.12 -0.26 1.19 16 10 H 0.13 1.73 7.39 -51.93 -0.38 1.35 16 11 C -0.12 -1.09 7.20 -25.92 -0.19 -1.27 16 12 C -0.13 -1.35 4.34 -90.96 -0.40 -1.75 16 13 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 14 C 0.53 7.74 7.08 -10.98 -0.08 7.66 16 15 O -0.54 -9.68 15.74 5.56 0.09 -9.59 16 16 N -0.70 -11.26 5.53 -61.47 -0.34 -11.60 16 17 C 0.11 1.97 6.15 -5.19 -0.03 1.94 16 18 C 0.43 9.73 7.85 -10.98 -0.09 9.65 16 19 O -0.60 -15.14 15.24 5.55 0.08 -15.06 16 20 N -0.55 -13.57 5.29 -10.96 -0.06 -13.63 16 21 C -0.31 -8.31 9.68 -14.93 -0.14 -8.46 16 22 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 23 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 24 N -0.89 -23.87 13.05 55.50 0.72 -23.15 16 25 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 29 C -0.14 -1.31 7.46 -25.92 -0.19 -1.50 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 32 H 0.09 1.05 5.88 -51.93 -0.31 0.74 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 1.04 5.88 -51.93 -0.31 0.74 16 37 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.40 2.54 8.84 -40.82 -0.36 2.18 16 40 H 0.09 0.99 7.43 -51.93 -0.39 0.60 16 41 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 42 H 0.41 6.45 7.44 -40.82 -0.30 6.15 16 43 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 45 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -32.93 398.45 -7.01 -39.94 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -7.37 Total: 16.94 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -0.19 Total: 13.98 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.02 Total: -55.09 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -0.45 Total: -37.28 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.93 -7.01 -39.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854448717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.070 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds