Wall clock time and date at job start Sat Apr 11 2020 06:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.53000 * 109.47284 * 240.00193 * 2 1 3 5 5 O 1.45194 * 109.47039 * 120.00091 * 2 1 3 6 6 C 1.34638 * 117.00320 * 60.00284 * 5 2 1 7 7 O 1.21516 * 119.99375 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00641 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00099 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.91109 * 23.75176 * 9 8 6 11 11 C 1.53787 * 113.61210 * 155.00440 * 9 8 6 12 12 C 1.53779 * 87.07963 * 139.97940 * 11 9 8 13 13 H 1.08999 * 113.61062 * 219.93155 * 12 11 9 14 14 C 1.50704 * 113.61294 * 89.11707 * 12 11 9 15 15 O 1.21278 * 120.00176 * 359.97438 * 14 12 11 16 16 N 1.34779 * 119.99394 * 179.97438 * 14 12 11 17 17 C 1.46502 * 119.99401 * 179.97438 * 16 14 12 18 18 C 1.50703 * 109.47061 * 179.97438 * 17 16 14 19 19 O 1.21287 * 119.99827 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00035 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99780 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00183 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99605 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00140 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99603 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47396 * 60.00226 * 25 23 21 27 27 H 1.48503 * 109.47121 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47529 * 299.99899 * 25 23 21 29 29 C 1.53779 * 87.08402 * 334.56577 * 12 11 9 30 30 H 1.08996 * 109.47601 * 299.99573 * 1 2 3 31 31 H 1.09008 * 109.47003 * 59.99972 * 1 2 3 32 32 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47346 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47568 * 300.00538 * 3 2 1 35 35 H 1.09002 * 109.46886 * 59.99891 * 3 2 1 36 36 H 1.09001 * 109.47166 * 300.00086 * 4 2 1 37 37 H 1.09008 * 109.47235 * 59.99977 * 4 2 1 38 38 H 1.09005 * 109.47250 * 179.97438 * 4 2 1 39 39 H 0.97002 * 119.99411 * 0.02562 * 8 6 5 40 40 H 1.08997 * 113.61028 * 254.52900 * 11 9 8 41 41 H 1.09000 * 113.61529 * 25.43039 * 11 9 8 42 42 H 0.96995 * 120.00618 * 359.97438 * 16 14 12 43 43 H 1.09002 * 109.47234 * 299.99220 * 17 16 14 44 44 H 1.09003 * 109.47660 * 59.99777 * 17 16 14 45 45 H 0.97004 * 120.00178 * 359.97438 * 20 18 17 46 46 H 0.97006 * 120.00074 * 179.97438 * 24 23 21 47 47 H 1.09002 * 113.61557 * 270.88569 * 29 12 11 48 48 H 1.09004 * 113.61501 * 139.97990 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0680 -2.6658 2.4165 9 6 1.6739 -4.0669 2.5829 10 1 1.4197 -4.5511 1.6401 11 6 2.6474 -4.8817 3.4510 12 6 1.4101 -5.5543 4.0685 13 1 1.4909 -5.7139 5.1438 14 6 0.9589 -6.7859 3.3264 15 8 1.5619 -7.1551 2.3411 16 7 -0.1148 -7.4770 3.7578 17 6 -0.5537 -8.6739 3.0360 18 6 -1.7651 -9.2558 3.7180 19 8 -2.2169 -8.7234 4.7097 20 7 -2.3462 -10.3679 3.2260 21 6 -3.4486 -10.8969 3.8463 22 1 -3.8509 -10.4229 4.7292 23 6 -4.0481 -12.0431 3.3387 24 7 -3.5588 -12.6196 2.2639 25 14 -5.5495 -12.7643 4.1841 26 1 -6.6437 -11.7603 4.1913 27 1 -5.9956 -13.9766 3.4514 28 1 -5.2034 -13.1293 5.5814 29 6 0.6283 -4.2855 3.6892 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1301 -0.7208 -1.2495 39 1 2.6276 -2.2369 3.0828 40 1 3.2757 -5.5644 2.8790 41 1 3.2137 -4.2757 4.1583 42 1 -0.5969 -7.1819 4.5460 43 1 -0.8073 -8.4070 2.0100 44 1 0.2495 -9.4108 3.0318 45 1 -1.9851 -10.7935 2.4327 46 1 -3.9771 -13.4200 1.9098 47 1 0.6426 -3.5165 4.4617 48 1 -0.3734 -4.4870 3.3096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854448717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:18 Heat of formation + Delta-G solvation = -167.635742 kcal Electronic energy + Delta-G solvation = -29366.729630 eV Core-core repulsion = 25035.239134 eV Total energy + Delta-G solvation = -4331.490495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.04092 -41.42126 -40.26841 -39.01803 -37.68872 -36.25359 -35.35988 -35.29172 -34.07557 -33.38428 -29.76589 -28.36688 -28.28142 -27.21040 -26.71723 -26.00857 -23.60821 -22.33081 -21.39401 -21.21280 -20.45983 -19.98860 -19.15974 -18.44588 -17.78758 -17.29634 -17.18486 -17.11705 -16.82153 -16.48842 -16.39036 -15.95669 -15.67684 -15.40301 -15.28646 -15.20981 -14.56691 -14.37839 -13.93404 -13.80467 -13.61457 -13.55272 -13.33882 -13.26638 -13.06905 -13.00554 -12.90413 -12.89010 -12.85208 -12.50725 -12.48039 -12.28716 -12.14350 -11.79768 -11.62622 -11.57049 -11.38688 -11.12130 -10.91319 -10.57227 -10.21286 -10.15952 -10.09370 -8.51852 -6.02448 1.17427 1.37315 1.42094 1.53186 1.54269 1.74910 1.89861 2.01458 2.31317 3.11163 3.15104 3.17375 3.40095 3.46284 3.69256 3.75965 3.76833 3.81216 3.95618 4.16155 4.26022 4.40375 4.42326 4.48399 4.58801 4.61214 4.72354 4.73978 4.76819 4.82884 4.85217 4.87887 4.89261 5.00403 5.06527 5.17225 5.28091 5.28306 5.33159 5.37291 5.46070 5.60991 5.90404 6.44282 6.44883 6.53865 7.02016 7.17008 7.37794 7.42998 7.92645 8.64753 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.001789 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.514529 B =15645.730061 C =16332.017786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.134 4.134 4 C -0.181 4.181 5 O -0.365 6.365 6 C 0.641 3.359 7 O -0.599 6.599 8 N -0.683 5.683 9 C 0.133 3.867 10 H 0.082 0.918 11 C -0.107 4.107 12 C -0.129 4.129 13 H 0.145 0.855 14 C 0.523 3.477 15 O -0.579 6.579 16 N -0.704 5.704 17 C 0.120 3.880 18 C 0.433 3.567 19 O -0.623 6.623 20 N -0.560 5.560 21 C -0.339 4.339 22 H 0.088 0.912 23 C -0.011 4.011 24 N -0.916 5.916 25 Si 0.998 3.002 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.268 1.268 29 C -0.127 4.127 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.422 0.578 40 H 0.075 0.925 41 H 0.139 0.861 42 H 0.415 0.585 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.398 0.602 46 H 0.280 0.720 47 H 0.132 0.868 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.654 26.312 -0.168 30.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.089 3.911 3 C -0.191 4.191 4 C -0.238 4.238 5 O -0.279 6.279 6 C 0.395 3.605 7 O -0.490 6.490 8 N -0.342 5.342 9 C 0.029 3.971 10 H 0.100 0.900 11 C -0.145 4.145 12 C -0.151 4.151 13 H 0.163 0.837 14 C 0.310 3.690 15 O -0.459 6.459 16 N -0.358 5.358 17 C -0.008 4.008 18 C 0.220 3.780 19 O -0.511 6.511 20 N -0.195 5.195 21 C -0.468 4.468 22 H 0.105 0.895 23 C -0.212 4.212 24 N -0.556 5.556 25 Si 0.821 3.179 26 H -0.195 1.195 27 H -0.197 1.197 28 H -0.193 1.193 29 C -0.166 4.166 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.260 0.740 40 H 0.093 0.907 41 H 0.157 0.843 42 H 0.254 0.746 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.232 0.768 46 H 0.089 0.911 47 H 0.150 0.850 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.363 26.018 -0.801 29.730 hybrid contribution -0.840 -0.946 0.065 1.267 sum 13.523 25.072 -0.736 28.496 Atomic orbital electron populations 1.22477 0.94292 1.03414 1.03627 1.22390 0.94367 0.92876 0.81486 1.21872 1.02520 0.90309 1.04372 1.22482 1.01725 1.02016 0.97614 1.86300 1.71499 1.22895 1.47242 1.18467 0.78672 0.80916 0.82494 1.90932 1.42389 1.71066 1.44633 1.44648 1.54887 1.11628 1.23072 1.22578 0.97169 0.78841 0.98539 0.89964 1.23275 0.95361 0.97521 0.98355 1.22186 0.99472 0.90723 1.02687 0.83682 1.20818 0.79018 0.84906 0.84225 1.90684 1.56447 1.70550 1.28200 1.45707 1.30848 1.27027 1.32225 1.20763 0.95079 0.88865 0.96112 1.20412 0.87480 0.83180 0.86968 1.90466 1.67770 1.63319 1.29502 1.41858 1.26721 1.23578 1.27360 1.19721 1.06138 1.09400 1.11551 0.89456 1.26154 1.01978 0.96375 0.96691 1.69679 1.42380 1.21235 1.22329 0.84910 0.77173 0.77619 0.78174 1.19537 1.19661 1.19345 1.23495 0.97940 0.96110 0.99084 0.91674 0.89306 0.92490 0.90966 0.88187 0.90945 0.92527 0.89253 0.91721 0.73974 0.90673 0.84313 0.74645 0.89396 0.88745 0.76776 0.91066 0.84981 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.37 71.98 0.60 -2.59 16 2 C 0.13 2.09 1.13 -10.79 -0.01 2.08 16 3 C -0.13 -1.28 8.85 71.98 0.64 -0.64 16 4 C -0.18 -3.20 8.37 71.98 0.60 -2.60 16 5 O -0.36 -7.20 9.94 -55.48 -0.55 -7.75 16 6 C 0.64 15.08 8.06 129.79 1.05 16.13 16 7 O -0.60 -18.60 11.48 19.79 0.23 -18.37 16 8 N -0.68 -11.71 5.36 -567.60 -3.04 -14.75 16 9 C 0.13 2.68 3.89 45.52 0.18 2.86 16 10 H 0.08 2.43 7.39 -2.39 -0.02 2.41 16 11 C -0.11 -1.63 7.20 31.12 0.22 -1.40 16 12 C -0.13 -2.33 4.34 -11.01 -0.05 -2.38 16 13 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 14 C 0.52 15.17 7.08 87.66 0.62 15.79 16 15 O -0.58 -20.87 15.74 -3.02 -0.05 -20.92 16 16 N -0.70 -22.42 5.53 -466.77 -2.58 -25.00 16 17 C 0.12 4.41 6.15 85.63 0.53 4.94 16 18 C 0.43 20.03 7.85 87.66 0.69 20.72 16 19 O -0.62 -31.96 15.24 -3.05 -0.05 -32.01 16 20 N -0.56 -28.36 5.29 -306.99 -1.62 -29.99 16 21 C -0.34 -18.75 9.68 84.04 0.81 -17.94 16 22 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 24 N -0.92 -49.08 13.05 21.66 0.28 -48.79 16 25 Si 1.00 41.89 29.55 68.60 2.03 43.92 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 27 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 29 C -0.13 -2.19 7.46 31.12 0.23 -1.96 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 37 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.42 4.16 8.84 -92.71 -0.82 3.35 16 40 H 0.07 1.50 7.43 -2.39 -0.02 1.48 16 41 H 0.14 0.93 8.12 -2.39 -0.02 0.91 16 42 H 0.42 12.80 7.44 -92.71 -0.69 12.11 16 43 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.40 19.49 7.90 -92.71 -0.73 18.75 16 46 H 0.28 14.06 8.31 -92.70 -0.77 13.29 16 47 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.06 1.32 8.09 -2.39 -0.02 1.31 16 Total: -1.00 -74.59 398.45 0.00 -74.59 By element: Atomic # 1 Polarization: 47.42 SS G_CDS: -1.23 Total: 46.19 kcal Atomic # 6 Polarization: 26.30 SS G_CDS: 6.58 Total: 32.88 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -6.96 Total: -118.53 kcal Atomic # 8 Polarization: -78.63 SS G_CDS: -0.42 Total: -79.05 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -74.59 0.00 -74.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854448717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.047 kcal (2) G-P(sol) polarization free energy of solvation -74.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds