Wall clock time and date at job start Sat Apr 11 2020 06:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34235 * 116.99588 * 2 1 4 4 O 1.20816 * 120.00221 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99787 * 180.02562 * 3 2 1 6 6 C 1.52991 * 109.47165 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47201 * 179.97438 * 6 5 3 8 8 C 1.36939 * 120.00423 * 270.00228 * 7 6 5 9 9 H 1.08002 * 119.99499 * 20.60307 * 8 7 6 10 10 C 1.38802 * 120.00255 * 200.60736 * 8 7 6 11 11 N 1.31615 * 120.00200 * 4.72996 * 10 8 7 12 12 Si 1.86803 * 120.00012 * 184.73195 * 10 8 7 13 13 H 1.48499 * 109.47143 * 90.00151 * 12 10 8 14 14 H 1.48503 * 109.46961 * 209.99946 * 12 10 8 15 15 H 1.48500 * 109.47151 * 329.99980 * 12 10 8 16 16 C 1.46497 * 119.99902 * 90.00505 * 7 6 5 17 17 C 1.50697 * 109.47577 * 84.41740 * 16 7 6 18 18 O 1.21279 * 119.99507 * 359.97438 * 17 16 7 19 19 N 1.34778 * 120.00475 * 180.02562 * 17 16 7 20 20 C 1.46953 * 120.59575 * 180.02562 * 19 17 16 21 21 C 1.53373 * 108.63564 * 235.24406 * 20 19 17 22 22 N 1.46968 * 108.63488 * 310.57854 * 21 20 19 23 23 C 1.34778 * 120.59274 * 235.20187 * 22 21 20 24 24 C 1.50703 * 119.99691 * 4.85636 * 23 22 21 25 25 O 1.21273 * 119.99769 * 184.85401 * 23 22 21 26 26 C 1.46963 * 118.81034 * 55.47077 * 22 21 20 27 27 C 1.46970 * 120.58970 * 0.02562 * 19 17 16 28 28 H 1.09006 * 109.47089 * 299.99451 * 1 2 3 29 29 H 1.08997 * 109.47311 * 59.99345 * 1 2 3 30 30 H 1.08997 * 109.46710 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47144 * 59.99895 * 5 3 2 32 32 H 1.09000 * 109.47228 * 300.00506 * 5 3 2 33 33 H 1.09002 * 109.47097 * 60.00541 * 6 5 3 34 34 H 1.09000 * 109.47580 * 300.00437 * 6 5 3 35 35 H 0.97008 * 120.00276 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.47190 * 324.41355 * 16 7 6 37 37 H 1.09007 * 109.47067 * 204.42276 * 16 7 6 38 38 H 1.08995 * 109.61791 * 115.49993 * 20 19 17 39 39 H 1.09005 * 109.61577 * 354.98862 * 20 19 17 40 40 H 1.09002 * 109.61772 * 190.82944 * 21 20 19 41 41 H 1.09007 * 109.74819 * 70.40200 * 21 20 19 42 42 H 1.08994 * 109.47351 * 85.34995 * 24 23 22 43 43 H 1.09007 * 109.46630 * 205.34723 * 24 23 22 44 44 H 1.09000 * 109.47258 * 325.34486 * 24 23 22 45 45 H 1.09000 * 109.60646 * 64.27577 * 26 22 21 46 46 H 1.09006 * 109.60505 * 184.78119 * 26 22 21 47 47 H 1.09004 * 109.60700 * 244.49804 * 27 19 17 48 48 H 1.08997 * 109.60739 * 4.83919 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 7 5.4630 2.8189 -0.0011 8 6 6.1468 2.8551 1.1848 9 1 5.6765 2.5012 2.0903 10 6 7.4443 3.3469 1.2232 11 7 7.9843 3.8640 0.1400 12 14 8.4239 3.2746 2.8121 13 1 9.1724 1.9936 2.8743 14 1 9.3807 4.4095 2.8557 15 1 7.4975 3.3634 3.9693 16 6 6.1946 2.8569 -1.2697 17 6 6.2519 4.2757 -1.7744 18 8 5.7323 5.1673 -1.1372 19 7 6.8795 4.5537 -2.9342 20 6 6.9437 5.9326 -3.4381 21 6 6.3699 5.9620 -4.8602 22 7 7.0020 4.8913 -5.6438 23 6 7.6290 5.1691 -6.8041 24 6 7.7819 6.5992 -7.2542 25 8 8.0700 4.2683 -7.4858 26 6 6.9331 3.5115 -5.1426 27 6 7.5120 3.4831 -3.7176 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.9557 0.7811 -0.8908 32 1 3.9564 0.7807 0.8891 33 1 3.6107 3.2365 0.8890 34 1 3.6099 3.2361 -0.8910 35 1 8.8910 4.2080 0.1669 36 1 5.6846 2.2311 -2.0021 37 1 7.2075 2.4845 -1.1164 38 1 7.9806 6.2681 -3.4552 39 1 6.3559 6.5857 -2.7930 40 1 6.5825 6.9267 -5.3208 41 1 5.2921 5.8026 -4.8258 42 1 8.6723 7.0308 -6.7970 43 1 7.8795 6.6300 -8.3395 44 1 6.9046 7.1711 -6.9520 45 1 5.8948 3.1801 -5.1254 46 1 7.5178 2.8576 -5.7897 47 1 8.5894 3.6444 -3.7545 48 1 7.3021 2.5186 -3.2553 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879476119.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:22 Heat of formation + Delta-G solvation = -132.495512 kcal Electronic energy + Delta-G solvation = -31160.952348 eV Core-core repulsion = 26830.985647 eV Total energy + Delta-G solvation = -4329.966701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.44746 -41.29687 -40.10138 -38.12391 -37.57147 -36.91881 -34.91968 -33.95834 -32.71824 -31.69791 -30.79392 -29.08082 -28.46807 -27.75628 -26.03823 -24.66199 -23.71923 -22.87004 -21.50415 -20.93639 -19.47622 -18.78060 -18.46397 -18.21109 -17.54431 -17.53141 -17.14476 -16.91264 -16.85519 -16.48328 -16.44722 -15.94301 -15.56577 -15.17649 -14.78548 -14.70548 -14.60157 -14.51609 -14.12336 -13.81022 -13.71299 -13.61123 -13.35925 -13.07392 -12.97255 -12.93804 -12.83609 -12.74336 -12.50961 -12.33724 -12.27210 -12.23967 -12.06740 -11.93818 -11.79424 -11.64063 -11.52182 -10.88101 -10.82169 -10.22187 -10.11008 -9.12545 -8.79297 -7.83621 -5.26915 1.22162 1.49217 1.51795 1.58125 1.59676 1.80047 1.91981 2.37730 2.48405 2.61395 3.37067 3.58456 3.62158 3.88534 3.93581 3.99887 4.14627 4.19457 4.20360 4.33521 4.35264 4.36031 4.38042 4.45423 4.48197 4.53867 4.66809 4.70028 4.73779 4.74094 4.79307 4.88415 4.96556 4.99604 5.04554 5.12072 5.26203 5.39327 5.42406 5.44945 5.65072 5.90391 6.32412 6.39382 6.78175 6.81347 7.12758 7.16748 7.76519 7.97293 8.24858 9.20208 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008375 B = 0.003722 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.624597 B = 7520.276498 C =10024.668726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.470 3.530 4 O -0.544 6.544 5 C -0.119 4.119 6 C 0.171 3.829 7 N -0.585 5.585 8 C -0.257 4.257 9 H 0.075 0.925 10 C -0.041 4.041 11 N -0.922 5.922 12 Si 0.969 3.031 13 H -0.279 1.279 14 H -0.305 1.305 15 H -0.279 1.279 16 C 0.165 3.835 17 C 0.534 3.466 18 O -0.587 6.587 19 N -0.626 5.626 20 C 0.099 3.901 21 C 0.104 3.896 22 N -0.612 5.612 23 C 0.507 3.493 24 C -0.170 4.170 25 O -0.597 6.597 26 C 0.101 3.899 27 C 0.111 3.889 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.245 0.755 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.132 0.868 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.098 0.902 47 H 0.059 0.941 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 -2.330 -11.474 12.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.315 3.685 4 O -0.434 6.434 5 C -0.159 4.159 6 C 0.044 3.956 7 N -0.305 5.305 8 C -0.386 4.386 9 H 0.093 0.907 10 C -0.236 4.236 11 N -0.569 5.569 12 Si 0.799 3.201 13 H -0.205 1.205 14 H -0.232 1.232 15 H -0.205 1.205 16 C 0.035 3.965 17 C 0.324 3.676 18 O -0.466 6.466 19 N -0.362 5.362 20 C -0.025 4.025 21 C -0.019 4.019 22 N -0.345 5.345 23 C 0.298 3.702 24 C -0.228 4.228 25 O -0.479 6.479 26 C -0.023 4.023 27 C -0.013 4.013 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.152 0.848 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.150 0.850 41 H 0.092 0.908 42 H 0.127 0.873 43 H 0.115 0.885 44 H 0.127 0.873 45 H 0.096 0.904 46 H 0.116 0.884 47 H 0.077 0.923 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.643 -1.986 -11.434 12.904 hybrid contribution 0.574 0.483 1.216 1.429 sum -5.069 -1.503 -10.217 11.504 Atomic orbital electron populations 1.23534 0.75134 1.05637 1.02344 1.86532 1.24858 1.32830 1.83813 1.24175 0.92549 0.81021 0.70773 1.90637 1.68081 1.37557 1.47100 1.22026 0.85382 1.01696 1.06834 1.20383 0.83719 0.92103 0.99390 1.43890 1.00251 1.84037 1.02298 1.19514 0.96274 1.34639 0.88185 0.90696 1.25533 0.99536 0.98732 0.99813 1.69882 1.14485 1.44666 1.27826 0.85239 0.78153 0.76615 0.80096 1.20502 1.23186 1.20479 1.20792 0.99203 0.90447 0.86014 1.22179 0.74193 0.93758 0.77506 1.90478 1.49443 1.50010 1.56633 1.48181 1.57297 1.07822 1.22927 1.21774 1.01031 0.84922 0.94758 1.22290 0.97436 0.92118 0.90041 1.48244 1.55037 1.08906 1.22291 1.21602 0.75752 0.93293 0.79539 1.22006 1.06021 0.90427 1.04371 1.90673 1.51362 1.50395 1.55423 1.22077 1.02289 0.83756 0.94158 1.22014 0.96849 0.91899 0.90556 0.92335 0.92062 0.84822 0.86247 0.87012 0.94950 0.94641 0.94524 0.92054 0.87773 0.92064 0.90561 0.85010 0.90768 0.87324 0.88494 0.87331 0.90381 0.88388 0.92290 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.70 16 2 O -0.36 -9.55 10.57 -51.47 -0.54 -10.09 16 3 C 0.47 14.94 7.96 71.24 0.57 15.51 16 4 O -0.54 -20.65 15.73 21.99 0.35 -20.30 16 5 C -0.12 -3.82 6.13 29.85 0.18 -3.64 16 6 C 0.17 7.18 4.94 86.38 0.43 7.61 16 7 N -0.59 -27.68 2.03 -706.36 -1.43 -29.11 16 8 C -0.26 -13.35 9.72 84.03 0.82 -12.54 16 9 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 10 C -0.04 -2.18 5.24 84.86 0.44 -1.74 16 11 N -0.92 -49.88 8.69 21.65 0.19 -49.69 16 12 Si 0.97 44.03 29.56 68.60 2.03 46.06 16 13 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 14 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 16 C 0.16 7.11 3.71 85.63 0.32 7.43 16 17 C 0.53 24.00 5.86 87.66 0.51 24.52 16 18 O -0.59 -32.08 15.68 -3.03 -0.05 -32.13 16 19 N -0.63 -22.09 2.95 -817.13 -2.41 -24.50 16 20 C 0.10 2.95 6.59 86.42 0.57 3.52 16 21 C 0.10 2.13 6.44 86.42 0.56 2.69 16 22 N -0.61 -14.14 2.94 -817.09 -2.40 -16.55 16 23 C 0.51 11.91 7.80 87.66 0.68 12.60 16 24 C -0.17 -2.26 9.46 71.24 0.67 -1.58 16 25 O -0.60 -19.12 16.52 -3.01 -0.05 -19.16 16 26 C 0.10 2.47 6.61 86.57 0.57 3.04 16 27 C 0.11 3.17 6.52 86.57 0.56 3.73 16 28 H 0.06 1.15 8.13 -2.38 -0.02 1.13 16 29 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 30 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 32 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 33 H 0.03 1.50 8.00 -2.39 -0.02 1.48 16 34 H 0.04 1.54 8.03 -2.39 -0.02 1.52 16 35 H 0.24 13.32 8.31 -92.70 -0.77 12.55 16 36 H 0.06 2.19 7.69 -2.39 -0.02 2.17 16 37 H 0.10 4.87 5.90 -2.38 -0.01 4.86 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 2.64 6.99 -2.38 -0.02 2.62 16 40 H 0.13 1.66 5.44 -2.39 -0.01 1.65 16 41 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.11 0.90 6.21 -2.39 -0.01 0.88 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.10 2.45 7.02 -2.38 -0.02 2.44 16 47 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 48 H 0.10 2.77 5.91 -2.39 -0.01 2.75 16 Total: -1.00 -77.88 390.40 4.73 -73.15 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.97 Total: 19.48 kcal Atomic # 6 Polarization: 54.76 SS G_CDS: 8.09 Total: 62.85 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -6.06 Total: -119.85 kcal Atomic # 8 Polarization: -81.39 SS G_CDS: -0.30 Total: -81.69 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -77.88 4.73 -73.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879476119.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.343 kcal (2) G-P(sol) polarization free energy of solvation -77.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds