Wall clock time and date at job start Sat Apr 11 2020 06:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47131 * 250.53573 * 3 2 1 5 5 O 1.42896 * 109.45023 * 65.02902 * 4 3 2 6 6 C 1.53038 * 109.46214 * 185.00176 * 4 3 2 7 7 C 1.53188 * 109.31634 * 181.38223 * 6 4 3 8 8 N 1.46925 * 108.77443 * 305.36278 * 7 6 4 9 9 C 1.34774 * 120.62964 * 233.58240 * 8 7 6 10 10 O 1.21278 * 120.00004 * 0.02562 * 9 8 7 11 11 C 1.50707 * 119.99974 * 179.97438 * 9 8 7 12 12 C 1.53000 * 109.47156 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.46620 * 53.80971 * 12 11 9 14 14 C 1.50697 * 109.47179 * 293.81020 * 12 11 9 15 15 H 1.08002 * 119.99972 * 324.79184 * 14 12 11 16 16 C 1.37881 * 120.00053 * 144.78955 * 14 12 11 17 17 N 1.31514 * 120.00193 * 181.40071 * 16 14 12 18 18 Si 1.86799 * 119.99942 * 1.40726 * 16 14 12 19 19 H 1.48495 * 109.47142 * 267.09563 * 18 16 14 20 20 H 1.48500 * 109.47069 * 27.09368 * 18 16 14 21 21 H 1.48506 * 109.46974 * 147.08918 * 18 16 14 22 22 C 1.50692 * 109.47050 * 173.80631 * 12 11 9 23 23 C 1.38240 * 119.99765 * 66.65405 * 22 12 11 24 24 C 1.38229 * 119.99794 * 179.80907 * 23 22 12 25 25 C 1.38236 * 120.00531 * 0.39516 * 24 23 22 26 26 C 1.38240 * 119.99408 * 359.85447 * 25 24 23 27 27 C 1.38227 * 120.00043 * 359.95733 * 26 25 24 28 28 C 1.46926 * 118.73865 * 53.85966 * 8 7 6 29 29 C 1.53043 * 109.45796 * 305.06591 * 4 3 2 30 30 H 4.44650 * 5.63331 * 179.97438 * 4 1 2 31 31 H 1.08997 * 109.47039 * 130.53194 * 3 2 1 32 32 H 1.08998 * 109.46672 * 10.53266 * 3 2 1 33 33 H 0.96701 * 114.00498 * 299.96412 * 5 4 3 34 34 H 1.08996 * 109.49876 * 61.42575 * 6 4 3 35 35 H 1.09009 * 109.49337 * 301.33485 * 6 4 3 36 36 H 1.08997 * 109.58866 * 185.57615 * 7 6 4 37 37 H 1.09003 * 109.58551 * 65.15157 * 7 6 4 38 38 H 1.09002 * 109.46462 * 60.00395 * 11 9 8 39 39 H 1.09000 * 109.47206 * 300.00321 * 11 9 8 40 40 H 0.96999 * 120.00546 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.00018 * 359.97438 * 23 22 12 42 42 H 1.08008 * 120.00096 * 180.22728 * 24 23 22 43 43 H 1.07999 * 120.00791 * 179.83668 * 25 24 23 44 44 H 1.08001 * 119.99603 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00053 * 179.97438 * 27 26 25 46 46 H 1.08995 * 109.58827 * 65.92537 * 28 8 7 47 47 H 1.08998 * 109.58838 * 186.35286 * 28 8 7 48 48 H 1.09007 * 109.49752 * 298.56801 * 29 4 3 49 49 H 1.09001 * 109.49870 * 58.65979 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4815 1.3600 5 8 2.7785 -0.4576 2.3688 6 6 4.6809 0.6014 1.3196 7 6 5.1906 1.0497 2.6929 8 7 4.4979 2.2885 3.0730 9 6 5.1968 3.3843 3.4295 10 8 6.4092 3.3541 3.4381 11 6 4.4717 4.6476 3.8162 12 6 5.4908 5.7316 4.1733 13 1 6.1975 5.8505 3.3520 14 6 6.2340 5.3307 5.4215 15 1 5.7226 4.7906 6.2045 16 6 7.5669 5.6534 5.5638 17 7 8.2227 5.2796 6.6408 18 14 8.4414 6.6217 4.2269 19 1 9.0899 5.6812 3.2783 20 1 7.4558 7.4594 3.4975 21 1 9.4734 7.4943 4.8424 22 6 4.7742 7.0355 4.4123 23 6 3.9261 7.1697 5.4957 24 6 3.2719 8.3670 5.7171 25 6 3.4592 9.4277 4.8506 26 6 4.3033 9.2918 3.7643 27 6 4.9606 8.0958 3.5451 28 6 3.0288 2.3080 3.0630 29 6 2.5435 1.8471 1.6802 30 1 -1.0501 0.0001 -0.0002 31 1 3.0090 0.6687 -0.7810 32 1 3.0097 -1.0095 -0.1879 33 1 1.8234 -0.5843 2.4509 34 1 4.9684 1.3358 0.5673 35 1 5.1153 -0.3664 1.0685 36 1 6.2640 1.2320 2.6426 37 1 4.9837 0.2743 3.4304 38 1 3.8332 4.4508 4.6774 39 1 3.8599 4.9860 2.9799 40 1 9.1603 5.5069 6.7411 41 1 3.7768 6.3399 6.1706 42 1 2.6121 8.4731 6.5656 43 1 2.9460 10.3624 5.0221 44 1 4.4494 10.1204 3.0871 45 1 5.6197 7.9895 2.6962 46 1 2.6492 1.6331 3.8301 47 1 2.6755 3.3207 3.2570 48 1 2.8511 2.5700 0.9245 49 1 1.4565 1.7662 1.6857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882528205.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:28 Heat of formation + Delta-G solvation = -31.353768 kcal Electronic energy + Delta-G solvation = -30078.121944 eV Core-core repulsion = 26163.390342 eV Total energy + Delta-G solvation = -3914.731602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.39038 -40.18834 -39.46348 -36.57916 -35.83778 -34.63425 -33.79328 -32.90555 -31.95232 -31.59118 -30.45503 -29.25911 -27.74606 -24.97180 -24.45877 -23.88184 -23.24623 -21.82201 -21.02402 -19.80105 -19.00591 -18.94607 -18.21562 -17.43428 -17.26519 -16.85999 -16.44923 -16.20795 -15.83157 -15.79955 -15.65808 -15.32703 -14.86426 -14.76065 -14.66672 -14.52777 -14.17777 -13.98671 -13.88460 -13.61730 -13.47009 -13.35537 -13.03854 -12.91830 -12.83829 -12.65145 -12.32336 -12.20194 -12.02403 -11.88768 -11.79644 -11.77378 -11.48048 -11.34888 -11.04139 -10.98875 -10.69836 -10.63687 -10.43854 -9.60272 -9.49758 -9.29031 -8.21569 -6.18716 0.69540 0.74230 1.31853 1.37187 1.42403 1.86561 1.91807 1.96928 2.16989 2.42034 3.09403 3.24073 3.25779 3.42393 3.66614 3.78976 3.88140 4.04109 4.10400 4.14196 4.30172 4.32174 4.35821 4.41415 4.45698 4.49627 4.58754 4.60195 4.69904 4.74048 4.76477 4.83866 4.86673 4.88426 4.96878 4.99103 5.06227 5.11444 5.19840 5.21783 5.31774 5.38858 5.41927 5.68023 5.73932 5.78192 5.84315 6.04148 6.33686 6.37381 6.57654 6.72708 6.80670 6.82642 7.45422 7.48554 8.95714 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.003379 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.173190 B = 8283.661556 C = 9699.315968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.215 4.215 3 C -0.035 4.035 4 C 0.147 3.853 5 O -0.563 6.563 6 C -0.112 4.112 7 C 0.115 3.885 8 N -0.618 5.618 9 C 0.510 3.490 10 O -0.564 6.564 11 C -0.107 4.107 12 C 0.059 3.941 13 H 0.032 0.968 14 C -0.465 4.465 15 H 0.031 0.969 16 C 0.022 3.978 17 N -0.955 5.955 18 Si 0.921 3.079 19 H -0.291 1.291 20 H -0.222 1.222 21 H -0.296 1.296 22 C -0.063 4.063 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.139 4.139 26 C -0.124 4.124 27 C -0.151 4.151 28 C 0.109 3.891 29 C -0.151 4.151 30 H 0.242 0.758 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.384 0.616 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.258 0.742 41 H 0.106 0.894 42 H 0.138 0.862 43 H 0.147 0.853 44 H 0.141 0.859 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.095 0.905 48 H 0.078 0.922 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.895 -5.155 -14.994 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.216 4.216 3 C -0.072 4.072 4 C 0.107 3.893 5 O -0.371 6.371 6 C -0.150 4.150 7 C -0.007 4.007 8 N -0.353 5.353 9 C 0.299 3.701 10 O -0.441 6.441 11 C -0.147 4.147 12 C 0.039 3.961 13 H 0.050 0.950 14 C -0.503 4.503 15 H 0.049 0.951 16 C -0.174 4.174 17 N -0.597 5.597 18 Si 0.747 3.253 19 H -0.218 1.218 20 H -0.145 1.145 21 H -0.223 1.223 22 C -0.064 4.064 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.157 4.157 26 C -0.142 4.142 27 C -0.169 4.169 28 C -0.013 4.013 29 C -0.190 4.190 30 H 0.258 0.742 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.233 0.767 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.066 0.934 41 H 0.125 0.875 42 H 0.156 0.844 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.128 0.872 46 H 0.091 0.909 47 H 0.113 0.887 48 H 0.097 0.903 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.434 -5.191 -14.831 24.222 hybrid contribution 0.594 -0.036 0.031 0.596 sum -17.840 -5.228 -14.800 23.762 Atomic orbital electron populations 1.25642 0.96726 1.00175 0.98880 1.23182 0.94809 1.01387 1.02173 1.19440 0.85425 1.04093 0.98197 1.21002 0.93895 0.87914 0.86517 1.86549 1.29388 1.63358 1.57792 1.21876 0.93506 1.03100 0.96547 1.21371 0.96966 0.85564 0.96821 1.48224 1.07694 1.11392 1.67970 1.21113 0.87597 0.85669 0.75691 1.90704 1.16221 1.84416 1.52801 1.21584 0.98558 0.92228 1.02340 1.17997 0.93034 0.89347 0.95693 0.94959 1.20807 0.94432 1.33293 1.01729 0.95059 1.25639 0.98372 0.96557 0.96846 1.70036 1.09954 1.49605 1.30108 0.86148 0.79234 0.79289 0.80627 1.21754 1.14469 1.22333 1.20473 0.94604 0.96744 0.94545 1.20997 0.97347 0.98373 0.96943 1.21386 1.00044 0.92935 0.99969 1.21337 0.99764 0.99416 0.95190 1.21336 0.97102 0.97016 0.98731 1.21251 1.01195 0.94384 1.00054 1.21888 0.78078 1.03191 0.98102 1.22654 1.01837 0.97400 0.97076 0.74206 0.87796 0.88213 0.76654 0.89713 0.88748 0.91990 0.91759 0.89124 0.87886 0.93368 0.87542 0.84402 0.83571 0.84163 0.87161 0.90875 0.88710 0.90296 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.18 19.25 74.32 1.43 -0.75 16 2 C -0.22 -2.92 11.00 31.13 0.34 -2.57 16 3 C -0.03 -0.45 5.02 28.79 0.14 -0.31 16 4 C 0.15 2.44 0.73 -10.77 -0.01 2.43 16 5 O -0.56 -10.16 11.69 -148.98 -1.74 -11.91 16 6 C -0.11 -2.30 5.11 30.67 0.16 -2.14 16 7 C 0.12 3.44 6.19 86.36 0.53 3.97 16 8 N -0.62 -19.47 2.97 -818.08 -2.43 -21.90 16 9 C 0.51 21.10 7.45 87.66 0.65 21.75 16 10 O -0.56 -29.80 14.44 -3.02 -0.04 -29.84 16 11 C -0.11 -4.06 3.31 29.85 0.10 -3.96 16 12 C 0.06 2.73 1.17 -12.29 -0.01 2.71 16 13 H 0.03 1.60 4.94 -2.38 -0.01 1.59 16 14 C -0.46 -26.96 6.88 25.60 0.18 -26.78 16 15 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 16 C 0.02 1.35 5.47 84.66 0.46 1.81 16 17 N -0.96 -63.89 13.96 21.45 0.30 -63.59 16 18 Si 0.92 48.72 27.00 68.60 1.85 50.57 16 19 H -0.29 -15.92 7.11 99.48 0.71 -15.21 16 20 H -0.22 -10.38 4.72 99.48 0.47 -9.91 16 21 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 22 C -0.06 -2.59 4.65 -19.87 -0.09 -2.68 16 23 C -0.12 -4.49 8.93 22.27 0.20 -4.29 16 24 C -0.13 -3.85 10.05 22.27 0.22 -3.63 16 25 C -0.14 -3.83 10.05 22.27 0.22 -3.61 16 26 C -0.12 -3.69 10.05 22.27 0.22 -3.47 16 27 C -0.15 -5.52 8.69 22.27 0.19 -5.32 16 28 C 0.11 2.44 6.13 86.51 0.53 2.97 16 29 C -0.15 -2.51 4.80 30.82 0.15 -2.36 16 30 H 0.24 1.07 7.80 -4.41 -0.03 1.03 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.38 4.85 8.27 -74.06 -0.61 4.24 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.06 2.22 7.00 -2.39 -0.02 2.20 16 37 H 0.06 1.95 7.81 -2.39 -0.02 1.93 16 38 H 0.09 3.27 7.84 -2.39 -0.02 3.25 16 39 H 0.10 3.12 7.70 -2.39 -0.02 3.10 16 40 H 0.26 16.43 8.31 -92.71 -0.77 15.66 16 41 H 0.11 4.21 7.87 -2.91 -0.02 4.19 16 42 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 43 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 44 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 45 H 0.11 3.97 7.12 -2.91 -0.02 3.95 16 46 H 0.07 1.59 7.81 -2.39 -0.02 1.58 16 47 H 0.09 1.96 5.93 -2.39 -0.01 1.94 16 48 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 49 H 0.10 1.26 7.04 -2.39 -0.02 1.24 16 Total: -1.00 -82.17 392.30 3.67 -78.51 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.10 Total: 24.38 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: 5.63 Total: -26.22 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.13 Total: -85.49 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.78 Total: -41.75 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 1.85 Total: 50.57 kcal Total: -82.17 3.67 -78.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882528205.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.155 kcal (2) G-P(sol) polarization free energy of solvation -82.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds