Wall clock time and date at job start Sat Apr 11 2020 06:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86792 * 120.00342 * 2 1 4 4 H 1.48503 * 109.47505 * 274.51718 * 3 2 1 5 5 H 1.48501 * 109.47356 * 34.51466 * 3 2 1 6 6 H 1.48498 * 109.47290 * 154.51601 * 3 2 1 7 7 C 1.39943 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99945 * 162.76977 * 7 2 1 9 9 C 1.41397 * 120.00283 * 343.04417 * 7 2 1 10 10 C 1.40734 * 120.23992 * 333.94893 * 9 7 2 11 11 C 1.37599 * 119.74393 * 179.69625 * 10 9 7 12 12 C 1.38658 * 120.24587 * 0.60271 * 11 10 9 13 13 C 1.38610 * 120.50399 * 359.67005 * 12 11 10 14 14 C 1.37645 * 120.24698 * 0.02794 * 13 12 11 15 15 C 1.50698 * 120.12950 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46677 * 264.97614 * 15 14 13 17 17 O 1.21282 * 120.00192 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99864 * 179.97438 * 16 15 14 19 19 C 1.46500 * 120.00158 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47037 * 179.97438 * 19 18 16 21 21 C 1.53098 * 119.79817 * 23.07239 * 20 19 18 22 22 C 1.54719 * 122.40066 * 310.80278 * 20 19 18 23 23 H 1.09000 * 122.22841 * 359.48490 * 22 20 19 24 24 C 1.54469 * 104.06675 * 223.50339 * 22 20 19 25 25 O 1.44607 * 105.15106 * 336.96459 * 24 22 20 26 26 C 1.43333 * 105.22473 * 38.93382 * 25 24 22 27 27 C 1.52804 * 115.73445 * 90.09097 * 26 25 24 28 28 C 1.53955 * 86.77752 * 92.98348 * 27 26 25 29 29 C 1.52761 * 115.80101 * 191.17055 * 26 25 24 30 30 H 0.97004 * 119.99409 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.13010 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.87850 * 180.29967 * 11 10 9 33 33 H 1.08001 * 119.75343 * 179.69906 * 12 11 10 34 34 H 1.07997 * 119.88261 * 180.02562 * 13 12 11 35 35 H 1.09000 * 109.47240 * 24.96717 * 15 14 13 36 36 H 1.08993 * 109.47598 * 144.97340 * 15 14 13 37 37 H 0.97003 * 119.99964 * 0.02562 * 18 16 15 38 38 H 1.09003 * 109.47079 * 299.99800 * 19 18 16 39 39 H 1.08993 * 109.47005 * 59.99645 * 19 18 16 40 40 H 1.09003 * 117.41765 * 355.38942 * 21 20 19 41 41 H 1.08999 * 117.42462 * 139.97348 * 21 20 19 42 42 H 1.08992 * 110.30644 * 218.04714 * 24 22 20 43 43 H 1.09000 * 110.38902 * 95.92340 * 24 22 20 44 44 H 1.08998 * 113.66417 * 207.46137 * 27 26 25 45 45 H 1.08999 * 113.66292 * 338.51589 * 27 26 25 46 46 H 1.08997 * 113.58702 * 270.10213 * 28 27 26 47 47 H 1.09005 * 113.58387 * 139.28810 * 28 27 26 48 48 H 1.09002 * 113.66329 * 21.55080 * 29 26 25 49 49 H 1.08997 * 113.66788 * 152.60104 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3944 2.1015 -1.3957 5 1 1.4908 2.6232 0.7933 6 1 3.5843 1.4143 0.6024 7 6 2.0079 -1.2120 -0.0005 8 1 3.0516 -1.2329 -0.2776 9 6 1.3470 -2.4101 0.3560 10 6 0.2251 -2.3750 1.2051 11 6 -0.4140 -3.5465 1.5405 12 6 0.0508 -4.7594 1.0553 13 6 1.1581 -4.8064 0.2229 14 6 1.8095 -3.6465 -0.1307 15 6 3.0128 -3.7006 -1.0362 16 6 4.2680 -3.7244 -0.2026 17 8 4.1928 -3.6994 1.0077 18 7 5.4742 -3.7736 -0.8019 19 6 6.6945 -3.7962 0.0084 20 6 7.9162 -3.8525 -0.9109 21 6 7.8053 -3.3562 -2.3550 22 6 8.0339 -4.8684 -2.0719 23 1 7.2543 -5.5994 -2.2860 24 6 9.4860 -5.3856 -1.9725 25 8 10.2084 -4.3505 -1.2669 26 6 9.3056 -3.8834 -0.2564 27 6 9.3823 -4.6066 1.0875 28 6 10.3771 -3.5142 1.5202 29 6 9.7212 -2.6034 0.4663 30 1 -0.4849 0.8401 0.0004 31 1 -0.1354 -1.4319 1.5883 32 1 -1.2781 -3.5216 2.1880 33 1 -0.4541 -5.6745 1.3275 34 1 1.5113 -5.7565 -0.1495 35 1 2.9664 -4.6010 -1.6487 36 1 3.0218 -2.8223 -1.6815 37 1 5.5344 -3.7932 -1.7699 38 1 6.7411 -2.8953 0.6203 39 1 6.6855 -4.6740 0.6543 40 1 6.8208 -3.0448 -2.7045 41 1 8.6459 -2.7912 -2.7576 42 1 9.9058 -5.5283 -2.9682 43 1 9.5189 -6.3195 -1.4113 44 1 8.4464 -4.5923 1.6460 45 1 9.8245 -5.6009 1.0246 46 1 11.4162 -3.7584 1.2996 47 1 10.2304 -3.1718 2.5446 48 1 10.4342 -1.9972 -0.0926 49 1 8.8809 -2.0250 0.8501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890173687.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:34 Heat of formation + Delta-G solvation = -4.059065 kcal Electronic energy + Delta-G solvation = -29844.449553 eV Core-core repulsion = 25930.901538 eV Total energy + Delta-G solvation = -3913.548015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.54278 -39.16219 -37.39416 -36.93397 -35.55203 -33.60243 -33.11214 -31.67256 -29.44895 -28.58161 -27.40388 -26.48641 -25.61679 -25.16235 -24.47222 -21.49479 -20.93441 -20.71396 -20.08444 -19.48148 -18.87799 -17.23842 -16.97787 -16.24154 -15.87213 -15.71540 -15.48278 -15.35867 -14.96270 -14.67152 -14.42332 -13.93856 -13.80770 -13.49827 -13.17100 -12.93861 -12.86129 -12.70663 -12.56583 -12.54883 -12.31186 -11.75076 -11.67518 -11.55426 -11.19494 -11.15057 -11.04135 -11.00388 -10.95866 -10.75682 -10.67483 -10.38594 -10.35971 -9.97168 -9.61089 -9.46242 -9.37026 -9.17905 -9.12510 -8.69902 -7.29627 -7.27146 -6.72711 -4.32138 2.79883 2.97831 3.07841 3.09354 3.13322 3.28448 3.33967 3.38910 3.58624 3.95086 4.09948 4.25189 4.44785 4.46057 4.57583 4.63558 4.67938 4.75045 4.93928 5.00063 5.23432 5.34726 5.43323 5.48687 5.50401 5.50667 5.65529 5.66389 5.70960 5.76784 5.79399 5.84386 5.86649 5.99800 6.02532 6.04076 6.17001 6.30038 6.43960 6.52825 6.62766 6.75425 6.81828 7.10493 7.31204 7.44111 7.65715 7.87046 7.96303 8.09130 8.15149 8.33486 8.66610 8.85115 8.93611 9.03623 10.21852 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.003066 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.893549 B = 9129.343865 C =10209.971299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.078 3.922 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.074 0.926 9 C 0.130 3.870 10 C -0.160 4.160 11 C -0.107 4.107 12 C -0.240 4.240 13 C -0.081 4.081 14 C -0.181 4.181 15 C -0.070 4.070 16 C 0.515 3.485 17 O -0.519 6.519 18 N -0.746 5.746 19 C 0.170 3.830 20 C -0.163 4.163 21 C -0.125 4.125 22 C -0.200 4.200 23 H 0.126 0.874 24 C 0.074 3.926 25 O -0.347 6.347 26 C 0.119 3.881 27 C -0.152 4.152 28 C -0.136 4.136 29 C -0.125 4.125 30 H 0.279 0.721 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.394 0.606 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.358 -6.176 -4.844 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.092 0.908 9 C 0.127 3.873 10 C -0.179 4.179 11 C -0.125 4.125 12 C -0.259 4.259 13 C -0.099 4.099 14 C -0.183 4.183 15 C -0.110 4.110 16 C 0.302 3.698 17 O -0.392 6.392 18 N -0.403 5.403 19 C 0.046 3.954 20 C -0.163 4.163 21 C -0.162 4.162 22 C -0.218 4.218 23 H 0.144 0.856 24 C -0.002 4.002 25 O -0.266 6.266 26 C 0.078 3.922 27 C -0.190 4.190 28 C -0.174 4.174 29 C -0.162 4.162 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.229 0.771 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.087 0.913 44 H 0.115 0.885 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 17.311 -5.929 -3.972 18.724 hybrid contribution 0.118 0.589 -0.488 0.774 sum 17.429 -5.340 -4.460 18.766 Atomic orbital electron populations 1.69830 1.07489 1.29043 1.35650 1.25869 0.94665 1.01112 0.92320 0.86417 0.80955 0.81119 0.78968 1.19622 1.20022 1.18508 1.19463 0.97431 0.91048 1.40703 0.90810 1.17326 0.90685 0.91250 0.87993 1.21271 0.99148 0.96660 1.00816 1.20670 0.98624 0.93464 0.99752 1.20298 1.01709 0.96114 1.07822 1.20295 0.95981 0.95519 0.98147 1.19032 0.99411 0.94008 1.05851 1.20261 0.90524 1.02700 0.97529 1.21251 0.84289 0.74803 0.89415 1.90684 1.86851 1.47044 1.14669 1.46243 1.05571 1.78587 1.09906 1.20374 0.80788 1.02244 0.92036 1.23173 0.96200 1.06421 0.90553 1.23320 1.03468 0.94068 0.95335 1.24549 0.98925 0.93071 1.05277 0.85606 1.22911 0.89166 0.90898 0.97226 1.88977 1.37123 1.53829 1.46640 1.22001 0.85545 0.96680 0.87946 1.23317 1.00851 0.98977 0.95848 1.22853 0.98889 0.96453 0.99172 1.22893 1.01357 0.95391 0.96572 0.90988 0.86660 0.89599 0.89691 0.89823 0.90700 0.88601 0.77108 0.90926 0.91288 0.87285 0.88125 0.88716 0.91299 0.88525 0.90799 0.89951 0.90927 0.90489 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.54 11.01 55.55 0.61 -19.93 16 2 C 0.08 1.95 5.15 -17.34 -0.09 1.86 16 3 Si 0.90 18.86 29.59 -169.99 -5.03 13.83 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.01 8.15 -37.74 -0.31 -12.32 16 8 H 0.07 1.89 6.67 -52.48 -0.35 1.54 16 9 C 0.13 3.48 5.56 -106.82 -0.59 2.88 16 10 C -0.16 -4.29 8.68 -38.87 -0.34 -4.63 16 11 C -0.11 -2.62 10.02 -39.66 -0.40 -3.02 16 12 C -0.24 -5.63 10.05 -39.29 -0.39 -6.02 16 13 C -0.08 -1.88 9.66 -39.66 -0.38 -2.26 16 14 C -0.18 -4.36 4.43 -103.91 -0.46 -4.82 16 15 C -0.07 -1.36 5.18 -29.04 -0.15 -1.51 16 16 C 0.51 9.87 7.46 -10.98 -0.08 9.79 16 17 O -0.52 -12.33 16.03 5.56 0.09 -12.24 16 18 N -0.75 -10.61 5.36 -60.29 -0.32 -10.93 16 19 C 0.17 2.22 5.17 -4.04 -0.02 2.20 16 20 C -0.16 -1.70 2.44 -153.23 -0.37 -2.08 16 21 C -0.13 -1.17 9.29 -25.33 -0.24 -1.41 16 22 C -0.20 -1.79 6.99 -87.60 -0.61 -2.40 16 23 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 24 C 0.07 0.64 7.54 37.93 0.29 0.93 16 25 O -0.35 -3.76 11.18 -35.23 -0.39 -4.16 16 26 C 0.12 1.22 0.94 -90.53 -0.09 1.13 16 27 C -0.15 -1.46 7.41 -26.33 -0.20 -1.66 16 28 C -0.14 -1.21 8.09 -25.74 -0.21 -1.42 16 29 C -0.12 -1.22 7.62 -26.35 -0.20 -1.42 16 30 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 31 H 0.12 3.18 6.25 -52.49 -0.33 2.85 16 32 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 33 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 36 H 0.10 1.82 7.05 -51.93 -0.37 1.46 16 37 H 0.39 4.48 6.07 -40.82 -0.25 4.23 16 38 H 0.07 1.05 7.85 -51.93 -0.41 0.64 16 39 H 0.07 0.94 7.17 -51.93 -0.37 0.57 16 40 H 0.11 0.96 6.39 -51.93 -0.33 0.63 16 41 H 0.10 0.95 8.12 -51.93 -0.42 0.53 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.96 6.49 -51.93 -0.34 0.63 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.10 0.97 7.84 -51.93 -0.41 0.56 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -31.09 391.74 -11.34 -42.43 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -7.35 Total: 11.28 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -4.84 Total: -26.18 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.29 Total: -30.86 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.30 Total: -16.40 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.09 -11.34 -42.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890173687.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.367 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds