Wall clock time and date at job start Sat Apr 11 2020 06:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46730 * 2 1 4 4 C 1.35637 * 125.67870 * 263.41201 * 3 2 1 5 5 C 1.35519 * 108.84791 * 180.29494 * 4 3 2 6 6 Cl 1.73606 * 126.06997 * 179.70919 * 5 4 3 7 7 C 1.39882 * 107.85474 * 359.72511 * 5 4 3 8 8 C 1.37642 * 125.67694 * 83.24186 * 3 2 1 9 9 C 1.46664 * 126.22030 * 359.97410 * 8 3 2 10 10 O 1.21704 * 120.00368 * 7.57930 * 9 8 3 11 11 N 1.34782 * 120.00103 * 187.57837 * 9 8 3 12 12 C 1.46493 * 119.99782 * 5.09710 * 11 9 8 13 13 C 1.50699 * 109.47376 * 271.77041 * 12 11 9 14 14 H 1.08003 * 119.99785 * 5.00666 * 13 12 11 15 15 C 1.37873 * 120.00345 * 184.99643 * 13 12 11 16 16 N 1.31519 * 120.00011 * 5.13137 * 15 13 12 17 17 Si 1.86798 * 120.00489 * 185.12287 * 15 13 12 18 18 H 1.48500 * 109.46985 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47107 * 120.00249 * 17 15 13 20 20 H 1.48497 * 109.47602 * 240.00479 * 17 15 13 21 21 C 1.46500 * 119.99902 * 185.10064 * 11 9 8 22 22 C 1.53003 * 109.47070 * 269.99520 * 21 11 9 23 23 C 1.52992 * 109.47244 * 180.02562 * 22 21 11 24 24 N 1.46899 * 109.47408 * 180.02562 * 23 22 21 25 25 C 1.46903 * 110.99883 * 66.04893 * 24 23 22 26 26 C 1.46903 * 110.99988 * 189.99666 * 24 23 22 27 27 H 1.09000 * 109.46751 * 184.98700 * 1 2 3 28 28 H 1.08996 * 109.47180 * 304.98889 * 1 2 3 29 29 H 1.09001 * 109.47384 * 64.99546 * 1 2 3 30 30 H 1.09003 * 109.47059 * 240.00476 * 2 1 3 31 31 H 1.08995 * 109.47105 * 119.99622 * 2 1 3 32 32 H 1.07999 * 125.57195 * 359.97438 * 4 3 2 33 33 H 1.08001 * 126.45311 * 179.97438 * 7 5 4 34 34 H 1.09002 * 109.47326 * 31.77573 * 12 11 9 35 35 H 1.09000 * 109.46977 * 151.76816 * 12 11 9 36 36 H 0.96996 * 120.00213 * 179.97438 * 16 15 13 37 37 H 1.08994 * 109.47274 * 29.99715 * 21 11 9 38 38 H 1.09001 * 109.46774 * 149.99824 * 21 11 9 39 39 H 1.08993 * 109.47138 * 300.00769 * 22 21 11 40 40 H 1.09006 * 109.46374 * 60.00411 * 22 21 11 41 41 H 1.09007 * 109.47443 * 300.00379 * 23 22 21 42 42 H 1.08995 * 109.47313 * 59.99952 * 23 22 21 43 43 H 1.08996 * 109.47182 * 59.99672 * 25 24 23 44 44 H 1.09003 * 109.47084 * 180.02562 * 25 24 23 45 45 H 1.09008 * 109.46728 * 300.00135 * 25 24 23 46 46 H 1.09002 * 109.46863 * 60.00551 * 26 24 23 47 47 H 1.08998 * 109.46900 * 179.97438 * 26 24 23 48 48 H 1.08989 * 109.47285 * 299.99886 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4011 2.0850 -1.0945 5 6 2.7971 3.3208 -0.7040 6 17 3.3810 4.5830 -1.7431 7 6 2.6522 3.3985 0.6852 8 6 2.1617 2.1820 1.1103 9 6 1.8547 1.8072 2.4946 10 8 1.5622 0.6567 2.7630 11 7 1.8964 2.7368 3.4696 12 6 2.1384 4.1417 3.1322 13 6 3.6220 4.4052 3.1121 14 1 4.3171 3.5900 3.2489 15 6 4.0920 5.6869 2.9189 16 7 3.2484 6.6937 2.8531 17 14 5.9270 5.9935 2.7509 18 1 6.6562 4.7044 2.8596 19 1 6.2068 6.6101 1.4292 20 1 6.3767 6.9095 3.8296 21 6 1.6999 2.3423 4.8667 22 6 0.2113 2.4159 5.2129 23 6 0.0061 2.0046 6.6721 24 7 -1.4231 2.0746 7.0043 25 6 -2.1889 1.0746 6.2484 26 6 -1.6359 1.9184 8.4494 27 1 -0.3633 -1.0238 0.0893 28 1 -0.3633 0.5893 0.8419 29 1 -0.3634 0.4344 -0.9313 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5137 0.8900 32 1 2.3964 1.7185 -2.1104 33 1 2.8818 4.2508 1.3076 34 1 1.7177 4.3571 2.1500 35 1 1.6658 4.7810 3.8779 36 1 3.5791 7.5954 2.7175 37 1 2.0562 1.3222 5.0098 38 1 2.2578 3.0166 5.5165 39 1 -0.1450 3.4360 5.0697 40 1 -0.3465 1.7416 4.5630 41 1 0.3626 0.9845 6.8157 42 1 0.5640 2.6790 7.3217 43 1 -1.8223 0.0771 6.4905 44 1 -3.2437 1.1486 6.5130 45 1 -2.0689 1.2564 5.1803 46 1 -1.1141 2.7138 8.9816 47 1 -2.7023 1.9747 8.6678 48 1 -1.2494 0.9515 8.7712 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906414029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:37 Heat of formation + Delta-G solvation = 27.326851 kcal Electronic energy + Delta-G solvation = -28713.152076 eV Core-core repulsion = 24830.824958 eV Total energy + Delta-G solvation = -3882.327118 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.01864 -38.68191 -37.50420 -35.90260 -35.42708 -33.63852 -33.03745 -31.61529 -29.04760 -28.67253 -27.60751 -27.43061 -25.83651 -23.37715 -23.03035 -22.88725 -20.96064 -20.52788 -20.04607 -18.43367 -16.79231 -16.40493 -15.87061 -15.71021 -15.28987 -15.03168 -14.79274 -14.61957 -14.48465 -14.15040 -13.94538 -13.70164 -13.54279 -12.95803 -12.72189 -12.50509 -12.43094 -12.32094 -12.28986 -12.15818 -11.93541 -11.78647 -11.53898 -11.36496 -11.22815 -11.09515 -10.94206 -10.91235 -10.85827 -10.37670 -10.25975 -10.18107 -9.80825 -9.71377 -9.13466 -8.61592 -8.34958 -7.96780 -7.86395 -7.56255 -6.21104 -4.27243 2.04172 2.66362 3.10712 3.25515 3.32921 3.35272 3.39649 3.88491 4.05020 4.17264 4.35401 4.89609 5.06204 5.11605 5.13645 5.17941 5.21578 5.27890 5.36654 5.39110 5.43220 5.55787 5.63337 5.70128 5.71972 5.78853 5.79741 5.81919 5.89898 5.97801 6.00223 6.15183 6.20192 6.43735 6.47677 6.62093 6.74820 6.80122 7.03608 7.06544 7.20718 7.25598 7.49922 7.62001 7.63052 7.74692 8.00159 8.28316 8.76541 8.96567 9.37927 10.83751 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008843 B = 0.004387 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.534576 B = 6380.905582 C = 8843.399428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 N -0.412 5.412 4 C 0.015 3.985 5 C -0.132 4.132 6 Cl -0.065 7.065 7 C -0.119 4.119 8 C -0.044 4.044 9 C 0.589 3.411 10 O -0.583 6.583 11 N -0.579 5.579 12 C 0.214 3.786 13 C -0.538 4.538 14 H 0.064 0.936 15 C 0.071 3.929 16 N -0.881 5.881 17 Si 0.890 3.110 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.283 1.283 21 C 0.127 3.873 22 C -0.129 4.129 23 C 0.059 3.941 24 N -0.548 5.548 25 C 0.023 3.977 26 C 0.025 3.975 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.166 0.834 33 H 0.223 0.777 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.268 0.732 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.033 0.967 42 H 0.076 0.924 43 H 0.023 0.977 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.765 -9.903 -0.408 12.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.019 4.019 3 N -0.087 5.087 4 C -0.121 4.121 5 C -0.166 4.166 6 Cl -0.036 7.036 7 C -0.143 4.143 8 C -0.156 4.156 9 C 0.379 3.621 10 O -0.468 6.468 11 N -0.307 5.307 12 C 0.094 3.906 13 C -0.576 4.576 14 H 0.083 0.917 15 C -0.134 4.134 16 N -0.518 5.518 17 Si 0.717 3.283 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.209 1.209 21 C 0.003 3.997 22 C -0.168 4.168 23 C -0.069 4.069 24 N -0.271 5.271 25 C -0.126 4.126 26 C -0.123 4.123 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.183 0.817 33 H 0.239 0.761 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.042 0.958 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.186 -10.059 -0.444 12.370 hybrid contribution 1.414 -0.359 -0.142 1.466 sum -5.772 -10.419 -0.586 11.925 Atomic orbital electron populations 1.22051 0.94491 1.02634 1.02620 1.21933 0.95626 0.79898 1.04454 1.43880 1.48158 1.11364 1.05326 1.21492 1.06651 0.92167 0.91818 1.20116 1.12980 0.90847 0.92607 1.98282 1.87766 1.51313 1.66285 1.23796 0.97751 0.99630 0.93137 1.20016 1.15222 0.92218 0.88115 1.16850 0.77086 0.84552 0.83610 1.90663 1.52540 1.19659 1.83911 1.47832 1.67664 1.10139 1.05066 1.20183 0.96792 0.75000 0.98585 1.21427 0.91644 0.93824 1.50749 0.91743 1.24913 0.98194 0.95688 0.94577 1.69932 1.34433 0.99714 1.47682 0.86533 0.85076 0.78568 0.78097 1.19509 1.20320 1.20890 1.21217 0.94963 1.00949 0.82525 1.21947 0.97362 1.02787 0.94701 1.22077 0.87622 0.99694 0.97513 1.61968 1.09349 1.49692 1.06128 1.22421 0.97874 0.92619 0.99645 1.22367 1.01759 0.99901 0.88301 0.91169 0.91500 0.92614 0.89976 0.87604 0.81701 0.76131 0.92762 0.93854 0.92268 0.91223 0.90073 0.90773 0.91814 0.94886 0.90570 0.95830 0.91802 0.90882 0.91324 0.91643 0.95932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 10.24 37.16 0.38 -1.62 16 2 C 0.10 1.40 6.18 -4.04 -0.02 1.37 16 3 N -0.41 -7.05 2.76 -112.82 -0.31 -7.36 16 4 C 0.01 0.24 11.35 -16.84 -0.19 0.05 16 5 C -0.13 -2.50 6.66 -39.94 -0.27 -2.77 16 6 Cl -0.06 -1.16 29.30 -51.86 -1.52 -2.68 16 7 C -0.12 -2.56 8.19 -39.09 -0.32 -2.88 16 8 C -0.04 -0.91 6.72 -81.98 -0.55 -1.46 16 9 C 0.59 12.39 7.61 -12.86 -0.10 12.30 16 10 O -0.58 -12.36 14.43 5.19 0.07 -12.29 16 11 N -0.58 -11.99 2.46 -176.61 -0.43 -12.43 16 12 C 0.21 4.93 4.66 -5.20 -0.02 4.90 16 13 C -0.54 -13.40 6.94 -34.44 -0.24 -13.63 16 14 H 0.06 1.67 7.82 -52.48 -0.41 1.26 16 15 C 0.07 1.81 5.11 -17.82 -0.09 1.72 16 16 N -0.88 -23.31 13.28 55.43 0.74 -22.58 16 17 Si 0.89 20.36 29.54 -169.99 -5.02 15.33 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.13 2.26 5.36 -4.04 -0.02 2.24 16 22 C -0.13 -2.04 5.46 -26.73 -0.15 -2.18 16 23 C 0.06 0.79 4.96 -3.83 -0.02 0.78 16 24 N -0.55 -7.04 5.02 -251.26 -1.26 -8.30 16 25 C 0.02 0.27 9.32 60.07 0.56 0.83 16 26 C 0.03 0.26 9.57 60.07 0.57 0.83 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 31 H 0.11 1.63 6.57 -51.93 -0.34 1.29 16 32 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.22 5.34 2.92 -52.49 -0.15 5.19 16 34 H 0.06 1.32 4.87 -51.93 -0.25 1.07 16 35 H 0.04 1.05 8.05 -51.93 -0.42 0.63 16 36 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.07 1.24 7.50 -51.93 -0.39 0.85 16 38 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.07 6.55 -51.93 -0.34 0.73 16 41 H 0.03 0.43 8.12 -51.92 -0.42 0.01 16 42 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 43 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.06 0.65 8.12 -51.93 -0.42 0.22 16 45 H 0.07 0.92 6.47 -51.92 -0.34 0.59 16 46 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 47 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 48 H 0.02 0.22 8.14 -51.94 -0.42 -0.20 16 LS Contribution 399.15 15.07 6.02 6.02 Total: -1.00 -27.82 399.15 -9.88 -37.70 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.68 Total: 6.10 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -0.48 Total: 0.47 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -1.27 Total: -50.66 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.07 Total: -12.29 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.52 Total: -2.68 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -27.82 -9.88 -37.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906414029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.030 kcal (2) G-P(sol) polarization free energy of solvation -27.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds