Wall clock time and date at job start Sat Apr 11 2020 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99728 * 2 1 4 4 H 1.48494 * 109.47541 * 274.81860 * 3 2 1 5 5 H 1.48503 * 109.46947 * 34.82212 * 3 2 1 6 6 H 1.48499 * 109.47173 * 154.81612 * 3 2 1 7 7 C 1.38809 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00021 * 187.59003 * 7 2 1 9 9 N 1.36935 * 119.99987 * 7.58129 * 7 2 1 10 10 C 1.47668 * 134.45831 * 187.08704 * 9 7 2 11 11 C 1.53510 * 85.97776 * 204.29426 * 10 9 7 12 12 C 1.47667 * 134.45643 * 7.05805 * 9 7 2 13 13 C 1.52672 * 113.57130 * 91.01606 * 11 10 9 14 14 C 1.53330 * 109.11364 * 73.81349 * 13 11 10 15 15 N 1.46886 * 108.76583 * 52.40598 * 14 13 11 16 16 C 1.34774 * 120.46782 * 124.47205 * 15 14 13 17 17 O 1.21276 * 119.99993 * 359.72327 * 16 15 14 18 18 C 1.50702 * 119.99589 * 180.02562 * 16 15 14 19 19 H 1.08998 * 110.73036 * 61.95377 * 18 16 15 20 20 C 1.54376 * 110.81876 * 185.57526 * 18 16 15 21 21 C 1.51231 * 105.11650 * 91.93225 * 20 18 16 22 22 C 1.38740 * 130.69036 * 197.14077 * 21 20 18 23 23 C 1.38570 * 118.55685 * 179.97438 * 22 21 20 24 24 C 1.38232 * 118.99031 * 359.97438 * 23 22 21 25 25 N 1.31686 * 120.80282 * 0.02562 * 24 23 22 26 26 C 1.32303 * 122.03141 * 359.97438 * 25 24 23 27 27 C 1.51473 * 130.14651 * 179.97438 * 26 25 24 28 28 C 1.46884 * 119.06085 * 304.74728 * 15 14 13 29 29 C 1.52675 * 113.56529 * 222.23126 * 11 10 9 30 30 H 0.96997 * 119.99765 * 359.97438 * 1 2 3 31 31 H 1.09001 * 113.79190 * 90.02834 * 10 9 7 32 32 H 1.09002 * 113.78657 * 318.56312 * 10 9 7 33 33 H 1.09002 * 113.79120 * 41.43435 * 12 9 7 34 34 H 1.09003 * 113.79307 * 269.97148 * 12 9 7 35 35 H 1.08995 * 109.53235 * 313.92136 * 13 11 10 36 36 H 1.09002 * 109.59064 * 193.74424 * 13 11 10 37 37 H 1.08996 * 109.59052 * 292.62216 * 14 13 11 38 38 H 1.09005 * 109.59083 * 172.18784 * 14 13 11 39 39 H 1.08995 * 110.31323 * 210.83974 * 20 18 16 40 40 H 1.08996 * 110.31411 * 333.02130 * 20 18 16 41 41 H 1.07999 * 120.71895 * 359.96126 * 22 21 20 42 42 H 1.08000 * 120.50882 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.60122 * 180.02562 * 24 23 22 44 44 H 1.09001 * 110.29804 * 43.88179 * 27 26 25 45 45 H 1.09004 * 110.28900 * 281.74973 * 27 26 25 46 46 H 1.09004 * 109.58589 * 175.03738 * 28 15 14 47 47 H 1.08998 * 109.59034 * 295.47070 * 28 15 14 48 48 H 1.09000 * 109.52901 * 46.07450 * 29 11 10 49 49 H 1.08995 * 109.53085 * 166.22636 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3958 2.1054 -1.3950 5 1 1.5022 2.6211 0.7995 6 1 3.5949 1.4131 0.5958 7 6 2.0103 -1.2021 -0.0005 8 1 3.0832 -1.2062 0.1230 9 7 1.3347 -2.3828 -0.1575 10 6 1.7114 -3.8084 -0.0784 11 6 0.5082 -4.0657 -0.9963 12 6 -0.0628 -2.7406 -0.4732 13 6 0.8569 -4.0373 -2.4824 14 6 1.6218 -5.3163 -2.8432 15 7 0.8470 -6.4761 -2.3825 16 6 0.4983 -7.4512 -3.2450 17 8 0.8199 -7.3724 -4.4117 18 6 -0.2972 -8.6361 -2.7610 19 1 -1.2678 -8.3194 -2.3795 20 6 -0.4592 -9.6836 -3.8834 21 6 0.7062 -10.6316 -3.7093 22 6 1.2561 -11.5590 -4.5825 23 6 2.3411 -12.3081 -4.1561 24 6 2.8356 -12.1055 -2.8813 25 7 2.2882 -11.2162 -2.0791 26 6 1.2517 -10.4816 -2.4487 27 6 0.4861 -9.4196 -1.6870 28 6 0.4525 -6.5550 -0.9699 29 6 -0.3151 -5.2874 -0.5954 30 1 -0.4849 0.8400 0.0004 31 1 1.6039 -4.2370 0.9180 32 1 2.6727 -4.0353 -0.5394 33 1 -0.5116 -2.1189 -1.2480 34 1 -0.6976 -2.8518 0.4059 35 1 1.4798 -3.1683 -2.6940 36 1 -0.0585 -3.9816 -3.0716 37 1 2.5958 -5.3099 -2.3541 38 1 1.7536 -5.3708 -3.9239 39 1 -1.4021 -10.2182 -3.7688 40 1 -0.4125 -9.2020 -4.8601 41 1 0.8473 -11.6942 -5.5729 42 1 2.7935 -13.0391 -4.8098 43 1 3.6812 -12.6837 -2.5389 44 1 1.1764 -8.7577 -1.1640 45 1 -0.2025 -9.8835 -0.9807 46 1 -0.1858 -7.4253 -0.8168 47 1 1.3424 -6.6376 -0.3460 48 1 -0.4916 -5.2708 0.4801 49 1 -1.2695 -5.2722 -1.1216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035844949.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:12 Heat of formation + Delta-G solvation = 59.804503 kcal Electronic energy + Delta-G solvation = -30075.857190 eV Core-core repulsion = 26197.371258 eV Total energy + Delta-G solvation = -3878.485932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.37024 -40.12070 -38.78586 -36.18254 -35.80995 -32.92311 -32.48927 -31.28762 -30.57751 -29.50513 -28.09255 -26.90162 -25.15935 -24.65319 -23.60359 -22.95653 -22.09364 -21.86186 -20.88566 -19.36978 -17.93498 -17.02378 -16.83452 -16.69343 -16.27673 -16.13350 -15.22989 -15.12336 -14.89622 -14.75606 -14.55806 -13.83955 -13.79425 -13.75874 -13.65990 -13.23061 -13.13107 -12.96149 -12.48143 -12.39850 -12.26489 -12.18841 -12.02069 -11.75552 -11.71406 -11.52638 -11.17340 -10.98382 -10.87126 -10.84719 -10.35284 -10.18071 -9.97251 -9.81714 -9.73825 -9.52468 -9.51013 -9.34709 -8.94786 -8.73986 -8.45407 -6.85368 -5.77561 -3.07500 0.85033 1.05263 2.59035 2.99875 3.39339 3.44616 3.46376 3.50418 3.65523 4.12756 4.29626 4.39740 4.46809 4.59013 4.66642 4.85303 4.88101 4.98219 5.04452 5.05799 5.19194 5.23735 5.30788 5.32979 5.35426 5.45456 5.48458 5.52651 5.55632 5.61655 5.67712 5.72594 5.86240 5.89112 5.91231 5.95541 6.00842 6.16917 6.26639 6.30744 6.43396 6.45484 6.60755 6.65514 6.79210 6.85988 7.21501 7.36378 7.46256 7.56070 7.75699 7.99241 8.17470 9.05886 9.72098 10.63340 11.40750 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027468 B = 0.002313 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.107917 B =12100.782427 C =12194.213795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.078 0.922 9 N -0.608 5.608 10 C 0.125 3.875 11 C -0.109 4.109 12 C 0.181 3.819 13 C -0.096 4.096 14 C 0.113 3.887 15 N -0.601 5.601 16 C 0.522 3.478 17 O -0.543 6.543 18 C -0.111 4.111 19 H 0.119 0.881 20 C -0.067 4.067 21 C -0.137 4.137 22 C -0.063 4.063 23 C -0.174 4.174 24 C 0.099 3.901 25 N -0.478 5.478 26 C 0.117 3.883 27 C -0.067 4.067 28 C 0.104 3.896 29 C -0.119 4.119 30 H 0.253 0.747 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.030 0.970 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.157 0.843 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 -25.053 -6.123 25.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.334 5.334 10 C -0.001 4.001 11 C -0.111 4.111 12 C 0.055 3.945 13 C -0.134 4.134 14 C -0.009 4.009 15 N -0.334 5.334 16 C 0.309 3.691 17 O -0.421 6.421 18 C -0.132 4.132 19 H 0.137 0.863 20 C -0.105 4.105 21 C -0.139 4.139 22 C -0.089 4.089 23 C -0.194 4.194 24 C -0.059 4.059 25 N -0.187 5.187 26 C -0.021 4.021 27 C -0.105 4.105 28 C -0.018 4.018 29 C -0.158 4.158 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.174 0.826 44 H 0.114 0.886 45 H 0.120 0.880 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.355 -24.524 -5.860 25.251 hybrid contribution 0.154 0.855 -0.546 1.026 sum -1.201 -23.670 -6.406 24.551 Atomic orbital electron populations 1.69840 1.05012 1.25308 1.56568 1.24793 0.95601 0.97563 1.02463 0.86150 0.78680 0.83696 0.77536 1.21608 1.21784 1.20633 1.19022 0.90624 0.82277 1.43083 0.90397 1.46055 1.06278 0.99192 1.81876 1.22598 0.95331 0.86797 0.95338 1.22384 0.97977 0.95638 0.95077 1.22089 0.87837 0.88195 0.96360 1.21486 1.00425 0.96831 0.94683 1.21698 0.94097 0.84265 1.00793 1.48059 1.54217 1.21537 1.09552 1.20261 0.79763 0.83363 0.85711 1.90662 1.55635 1.78425 1.17380 1.22012 1.00307 0.93917 0.96999 0.86268 1.20899 0.95608 0.93523 1.00426 1.21432 0.98875 0.97862 0.95770 1.21061 0.94840 0.93752 0.99276 1.22066 0.97935 1.01377 0.98037 1.22617 0.98446 0.94442 0.90360 1.66832 1.09133 1.05530 1.37157 1.21774 0.91904 0.95294 0.93123 1.21156 0.98073 0.94594 0.96703 1.21861 0.99761 0.99094 0.81129 1.21757 0.98649 0.93842 1.01560 0.93706 0.95167 0.94187 0.92396 0.95186 0.89568 0.92138 0.91452 0.89437 0.89100 0.88278 0.84980 0.84611 0.82626 0.88552 0.87997 0.89901 0.90962 0.90487 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 11.77 55.49 0.65 -26.58 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.17 29.56 -169.99 -5.02 17.15 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.22 -6.17 10.68 -15.06 -0.16 -6.34 16 8 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 9 N -0.61 -15.14 3.52 -179.77 -0.63 -15.77 16 10 C 0.13 2.43 7.72 -3.15 -0.02 2.41 16 11 C -0.11 -1.87 0.77 -154.42 -0.12 -1.99 16 12 C 0.18 4.07 6.43 -3.16 -0.02 4.05 16 13 C -0.10 -1.59 5.21 -26.73 -0.14 -1.73 16 14 C 0.11 1.66 6.30 -3.66 -0.02 1.63 16 15 N -0.60 -7.74 2.92 -172.96 -0.51 -8.25 16 16 C 0.52 6.85 7.09 -10.99 -0.08 6.77 16 17 O -0.54 -9.03 14.89 5.56 0.08 -8.94 16 18 C -0.11 -1.02 2.51 -90.37 -0.23 -1.24 16 19 H 0.12 0.79 7.82 -51.93 -0.41 0.39 16 20 C -0.07 -0.60 6.13 -26.90 -0.16 -0.77 16 21 C -0.14 -1.43 6.16 -104.20 -0.64 -2.08 16 22 C -0.06 -0.58 10.17 -39.27 -0.40 -0.98 16 23 C -0.17 -1.45 10.12 -39.46 -0.40 -1.85 16 24 C 0.10 0.95 11.18 -17.62 -0.20 0.75 16 25 N -0.48 -5.77 10.35 -9.18 -0.10 -5.86 16 26 C 0.12 1.32 7.32 -82.03 -0.60 0.72 16 27 C -0.07 -0.60 5.05 -26.82 -0.14 -0.74 16 28 C 0.10 1.12 4.67 -3.91 -0.02 1.10 16 29 C -0.12 -1.54 5.24 -26.97 -0.14 -1.68 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 32 H 0.04 0.75 7.41 -51.93 -0.38 0.37 16 33 H 0.06 1.45 7.66 -51.93 -0.40 1.06 16 34 H 0.03 0.71 8.09 -51.93 -0.42 0.29 16 35 H 0.09 1.64 8.01 -51.93 -0.42 1.22 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.98 7.49 -51.93 -0.39 0.59 16 38 H 0.09 1.35 6.97 -51.93 -0.36 0.99 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 1.04 6.96 -51.93 -0.36 0.68 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.10 0.92 6.00 -51.93 -0.31 0.61 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.65 4.95 -51.93 -0.26 0.40 16 47 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 48 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 49 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -34.58 381.11 -10.84 -45.42 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.47 Total: -0.63 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -3.59 Total: -2.27 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.58 Total: -56.46 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.58 -10.84 -45.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035844949.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.222 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds