Wall clock time and date at job start Sat Apr 11 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21277 * 119.99757 * 2 1 4 4 N 1.34774 * 119.99996 * 180.27831 * 2 1 3 5 5 C 1.46496 * 119.99949 * 179.72091 * 4 2 1 6 6 C 1.53003 * 109.47315 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.50933 * 59.99894 * 6 5 4 8 8 C 1.53290 * 109.51349 * 180.10154 * 6 5 4 9 9 N 1.47151 * 108.38553 * 172.22220 * 8 6 5 10 10 C 1.34777 * 120.98306 * 129.48854 * 9 8 6 11 11 O 1.21353 * 120.00062 * 352.11642 * 10 9 8 12 12 C 1.49447 * 120.00276 * 172.12521 * 10 9 8 13 13 O 1.21348 * 120.00069 * 353.31505 * 12 10 9 14 14 N 1.34777 * 120.00073 * 173.31908 * 12 10 9 15 15 C 1.46499 * 119.99803 * 179.97438 * 14 12 10 16 16 C 1.52995 * 109.47247 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47449 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47007 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00789 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99950 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99736 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00139 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46917 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46925 * 119.99905 * 22 20 18 25 25 H 1.48502 * 109.47003 * 239.99905 * 22 20 18 26 26 C 1.47149 * 118.03667 * 309.46718 * 9 8 6 27 27 C 1.53297 * 108.38702 * 50.52970 * 26 9 8 28 28 O 1.42954 * 109.26236 * 307.72612 * 27 26 9 29 29 H 1.08996 * 109.47486 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47496 * 120.00208 * 1 2 3 31 31 H 1.09007 * 109.46946 * 239.99906 * 1 2 3 32 32 H 0.96998 * 120.00102 * 359.72335 * 4 2 1 33 33 H 1.09005 * 109.47353 * 300.00039 * 5 4 2 34 34 H 1.08999 * 109.47375 * 59.99874 * 5 4 2 35 35 H 1.09001 * 109.68258 * 291.94773 * 8 6 5 36 36 H 1.09009 * 109.68646 * 52.49861 * 8 6 5 37 37 H 0.96994 * 120.00032 * 359.97438 * 14 12 10 38 38 H 1.09009 * 109.46910 * 299.99835 * 15 14 12 39 39 H 1.09004 * 109.47341 * 59.99492 * 15 14 12 40 40 H 1.08998 * 109.47103 * 300.00334 * 16 15 14 41 41 H 1.09004 * 109.47234 * 59.99586 * 16 15 14 42 42 H 1.09000 * 109.47077 * 299.99986 * 17 16 15 43 43 H 1.08995 * 109.46757 * 60.00259 * 17 16 15 44 44 H 0.96995 * 120.00125 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.68438 * 170.25937 * 26 9 8 46 46 H 1.09003 * 109.67987 * 290.77319 * 26 9 8 47 47 H 1.09000 * 109.50829 * 67.61988 * 27 26 9 48 48 H 1.08992 * 109.51378 * 187.77636 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0057 5 6 3.6458 -1.1671 -0.0118 6 6 4.1559 -2.6096 -0.0181 7 1 3.7892 -3.1215 -0.9078 8 6 5.6888 -2.6107 -0.0220 9 7 6.1524 -3.9952 0.1610 10 6 7.0661 -4.5363 -0.6690 11 8 7.4127 -3.9353 -1.6646 12 6 7.6522 -5.8767 -0.3635 13 8 7.3991 -6.4238 0.6897 14 7 8.4619 -6.4779 -1.2576 15 6 9.0368 -7.7915 -0.9577 16 6 9.9104 -8.2453 -2.1290 17 6 10.5113 -9.6170 -1.8156 18 6 11.3722 -10.0636 -2.9690 19 1 11.4797 -9.4326 -3.8388 20 6 12.0220 -11.2786 -2.9144 21 7 11.8900 -12.0478 -1.8558 22 14 13.0885 -11.8325 -4.3444 23 1 13.0713 -10.7943 -5.4060 24 1 14.4821 -12.0349 -3.8732 25 1 12.5604 -13.1085 -4.8906 26 6 5.5895 -4.7713 1.2772 27 6 4.0614 -4.6649 1.2179 28 8 3.6868 -3.2870 1.1502 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 -0.3633 -0.5139 0.8900 32 1 1.6959 -2.0072 -0.0057 33 1 4.0055 -0.6511 -0.9021 34 1 4.0130 -0.6554 0.8778 35 1 6.0538 -2.2240 -0.9736 36 1 6.0585 -1.9889 0.7934 37 1 8.6640 -6.0407 -2.0995 38 1 9.6446 -7.7247 -0.0552 39 1 8.2343 -8.5126 -0.8027 40 1 9.3023 -8.3121 -3.0311 41 1 10.7129 -7.5243 -2.2844 42 1 11.1195 -9.5497 -0.9135 43 1 9.7090 -10.3382 -1.6600 44 1 12.3467 -12.9026 -1.8175 45 1 5.8887 -5.8155 1.1861 46 1 5.9496 -4.3675 2.2235 47 1 3.6943 -5.1851 0.3332 48 1 3.6301 -5.1159 2.1115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324372995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:59 Heat of formation + Delta-G solvation = -148.090091 kcal Electronic energy + Delta-G solvation = -29068.999666 eV Core-core repulsion = 24738.356733 eV Total energy + Delta-G solvation = -4330.642932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.27526 -40.13105 -39.38915 -38.38782 -36.15588 -35.39079 -34.92302 -33.39916 -32.53633 -31.33471 -30.36257 -28.90064 -27.45853 -26.49615 -24.36729 -23.72905 -22.61346 -21.59210 -21.00354 -20.80685 -19.81078 -18.00980 -17.62950 -17.26107 -17.04800 -16.70573 -16.48964 -16.35097 -15.91288 -15.70552 -15.38082 -15.15854 -15.02969 -14.75732 -14.47765 -14.07333 -14.05738 -13.75790 -13.61393 -13.38238 -13.13943 -12.82784 -12.49474 -12.40339 -12.36011 -11.94054 -11.91269 -11.80494 -11.55646 -11.19493 -10.96818 -10.83528 -10.70199 -10.60786 -10.37144 -9.97741 -9.71279 -9.57671 -9.37784 -9.18394 -9.10700 -9.04976 -8.42695 -6.07338 -4.10415 1.21855 1.98216 2.21200 2.72593 2.99488 3.05952 3.27006 3.27276 3.34957 3.38747 4.10972 4.20617 4.26125 4.39983 4.40946 4.42209 4.54473 4.73904 4.79528 4.86524 4.91754 5.03154 5.06355 5.15706 5.28946 5.29445 5.36361 5.41570 5.49101 5.58231 5.59669 5.79421 5.89709 5.98687 6.21267 6.45771 6.52948 6.60667 6.67615 6.88033 7.02207 7.13726 7.52349 7.56317 7.67140 7.76711 7.88149 7.91205 8.31797 8.96249 9.54349 11.03924 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.031908 B = 0.001540 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.318566 B =18173.866242 C =18547.490265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.510 3.490 3 O -0.548 6.548 4 N -0.725 5.725 5 C 0.129 3.871 6 C 0.068 3.932 7 H 0.073 0.927 8 C 0.082 3.918 9 N -0.590 5.590 10 C 0.512 3.488 11 O -0.517 6.517 12 C 0.503 3.497 13 O -0.518 6.518 14 N -0.686 5.686 15 C 0.113 3.887 16 C -0.123 4.123 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.040 3.960 27 C 0.048 3.952 28 O -0.375 6.375 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.406 0.594 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.412 0.588 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.261 0.739 45 H 0.149 0.851 46 H 0.080 0.920 47 H 0.057 0.943 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.936 20.052 6.265 31.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.297 3.703 3 O -0.426 6.426 4 N -0.378 5.378 5 C 0.005 3.995 6 C 0.009 3.991 7 H 0.091 0.909 8 C -0.041 4.041 9 N -0.325 5.325 10 C 0.295 3.705 11 O -0.392 6.392 12 C 0.284 3.716 13 O -0.397 6.397 14 N -0.337 5.337 15 C -0.009 4.009 16 C -0.161 4.161 17 C -0.013 4.013 18 C -0.562 4.562 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.082 4.082 27 C -0.029 4.029 28 O -0.294 6.294 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.240 0.760 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.248 0.752 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.166 0.834 46 H 0.098 0.902 47 H 0.075 0.925 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.503 20.642 6.671 31.256 hybrid contribution 0.677 -0.799 -1.187 1.583 sum -21.826 19.843 5.483 30.003 Atomic orbital electron populations 1.21913 0.91422 1.05641 1.04379 1.20841 0.90741 0.83268 0.75428 1.90741 1.70917 1.31428 1.49492 1.45881 1.06923 1.09169 1.75835 1.21298 0.80640 0.93860 1.03716 1.22680 0.93387 0.93474 0.89594 0.90914 1.22275 0.93770 0.82916 1.05105 1.47880 1.40726 1.13666 1.30182 1.20335 0.80071 0.87153 0.82948 1.90767 1.59959 1.62929 1.25544 1.19935 0.80958 0.85846 0.84908 1.90518 1.59202 1.65640 1.24355 1.46127 1.46019 1.21078 1.20501 1.21896 0.97498 0.80952 1.00574 1.21938 0.97683 1.01119 0.95394 1.19036 0.95784 0.89120 0.97396 1.21233 1.28635 1.03311 1.02984 0.92509 1.25024 0.96726 0.96679 0.95970 1.69968 1.43397 1.11500 1.28386 0.86520 0.80249 0.78614 0.82525 1.19719 1.20975 1.20980 1.23502 0.93492 1.01974 0.89200 1.23117 0.94296 0.82271 1.03242 1.87977 1.75915 1.23407 1.42103 0.88896 0.89335 0.89265 0.75983 0.89494 0.90197 0.87399 0.89610 0.75199 0.90905 0.90915 0.92403 0.92370 0.96166 0.96179 0.92948 0.83384 0.90174 0.92493 0.87002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.32 36.01 0.37 -0.27 16 2 C 0.51 3.92 7.94 -10.99 -0.09 3.84 16 3 O -0.55 -6.79 17.09 5.56 0.09 -6.69 16 4 N -0.73 -4.34 5.45 -60.29 -0.33 -4.66 16 5 C 0.13 0.85 5.37 -4.04 -0.02 0.83 16 6 C 0.07 0.44 2.86 -26.58 -0.08 0.37 16 7 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 8 C 0.08 0.65 5.95 -3.54 -0.02 0.63 16 9 N -0.59 -5.85 3.02 -172.78 -0.52 -6.37 16 10 C 0.51 6.34 7.75 -11.59 -0.09 6.25 16 11 O -0.52 -7.28 15.97 5.49 0.09 -7.19 16 12 C 0.50 6.83 7.74 -11.59 -0.09 6.74 16 13 O -0.52 -7.64 13.21 5.50 0.07 -7.57 16 14 N -0.69 -9.47 5.55 -60.73 -0.34 -9.81 16 15 C 0.11 1.79 5.67 -4.04 -0.02 1.77 16 16 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 17 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 18 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.61 5.46 -17.81 -0.10 1.51 16 21 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 22 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.04 0.34 6.13 -3.53 -0.02 0.32 16 27 C 0.05 0.31 6.98 37.31 0.26 0.57 16 28 O -0.38 -2.70 10.14 -35.23 -0.36 -3.05 16 29 H 0.09 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.41 1.58 8.35 -40.82 -0.34 1.24 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.89 7.07 -51.93 -0.37 0.53 16 36 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.41 5.22 7.96 -40.82 -0.33 4.90 16 38 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.15 1.52 4.50 -53.95 -0.24 1.28 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 400.27 15.07 6.03 6.03 Total: -1.00 -34.26 400.27 -7.61 -41.87 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.58 Total: 0.77 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -0.49 Total: 6.00 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.45 Total: -46.29 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.10 Total: -24.51 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.26 -7.61 -41.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324372995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.217 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds