Wall clock time and date at job start Sat Apr 11 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00113 * 2 1 4 4 C 1.52999 * 109.47099 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47402 * 64.99885 * 4 3 2 6 6 C 1.36939 * 119.99803 * 269.99582 * 5 4 3 7 7 H 1.08000 * 120.00021 * 141.79682 * 6 5 4 8 8 C 1.38815 * 120.00164 * 321.80491 * 6 5 4 9 9 N 1.31614 * 119.99854 * 339.27173 * 8 6 5 10 10 Si 1.86801 * 120.00050 * 159.27435 * 8 6 5 11 11 H 1.48500 * 109.46935 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47290 * 119.99854 * 10 8 6 13 13 H 1.48503 * 109.47068 * 239.99915 * 10 8 6 14 14 C 1.46503 * 120.00342 * 89.99987 * 5 4 3 15 15 C 1.53037 * 109.46001 * 244.77276 * 14 5 4 16 16 C 1.53189 * 109.31531 * 178.62726 * 15 14 5 17 17 N 1.46925 * 108.77519 * 54.62985 * 16 15 14 18 18 C 1.34779 * 120.62929 * 126.37060 * 17 16 15 19 19 O 1.21283 * 119.99932 * 0.02562 * 18 17 16 20 20 C 1.50703 * 120.00114 * 180.02562 * 18 17 16 21 21 H 1.09002 * 110.50142 * 319.29663 * 20 18 17 22 22 C 1.54080 * 110.56582 * 82.03865 * 20 18 17 23 23 O 1.45700 * 104.00960 * 118.72307 * 22 20 18 24 24 C 1.33773 * 109.47347 * 359.97438 * 23 22 20 25 25 O 1.21512 * 123.07190 * 179.97438 * 24 23 22 26 26 N 1.34000 * 113.85850 * 0.02562 * 24 23 22 27 27 C 1.46921 * 118.74140 * 306.64984 * 17 16 15 28 28 C 1.52758 * 109.01131 * 53.30642 * 27 17 16 29 29 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46854 * 299.99932 * 1 2 3 31 31 H 1.08991 * 109.47246 * 60.00253 * 1 2 3 32 32 H 1.08992 * 109.47572 * 59.99634 * 3 2 1 33 33 H 1.09005 * 109.46822 * 299.99854 * 3 2 1 34 34 H 1.08998 * 109.47143 * 304.99229 * 4 3 2 35 35 H 1.09006 * 109.46869 * 184.99950 * 4 3 2 36 36 H 0.97002 * 119.99731 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.45249 * 4.74453 * 14 5 4 38 38 H 1.09005 * 109.49801 * 58.67501 * 15 14 5 39 39 H 1.09001 * 109.52321 * 298.59282 * 15 14 5 40 40 H 1.09003 * 109.58425 * 294.84803 * 16 15 14 41 41 H 1.09001 * 109.70600 * 174.49301 * 16 15 14 42 42 H 1.09003 * 110.52212 * 237.34862 * 22 20 18 43 43 H 1.08998 * 110.52824 * 359.95366 * 22 20 18 44 44 H 0.97006 * 125.56070 * 180.02562 * 26 24 23 45 45 H 1.09005 * 109.58887 * 173.14110 * 27 17 16 46 46 H 1.08997 * 109.58946 * 293.56431 * 27 17 16 47 47 H 1.09001 * 109.56941 * 185.55861 * 28 27 17 48 48 H 1.09001 * 109.38692 * 65.51489 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0968 -0.7971 -1.3367 7 1 3.8120 -1.3096 -2.2437 8 6 4.5857 -1.5185 -0.2562 9 7 5.3006 -0.9143 0.6691 10 14 4.2288 -3.3466 -0.1153 11 1 3.4100 -3.7819 -1.2752 12 1 5.5078 -4.1010 -0.1008 13 1 3.4843 -3.6102 1.1423 14 6 4.2865 1.4005 -2.4148 15 6 3.2912 1.1021 -3.5384 16 6 3.5978 2.0024 -4.7393 17 7 5.0063 1.8231 -5.1173 18 6 5.3423 1.5044 -6.3830 19 8 4.4785 1.3632 -7.2225 20 6 6.7915 1.3233 -6.7550 21 1 7.4073 2.0820 -6.2721 22 6 7.2755 -0.0892 -6.3747 23 8 7.6650 -0.6830 -7.6469 24 6 7.4595 0.1984 -8.6320 25 8 7.7021 -0.0419 -9.7981 26 7 6.9627 1.3710 -8.2151 27 6 6.0410 1.9918 -4.0879 28 6 5.7073 1.0971 -2.8956 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.8515 0.5683 0.8410 35 1 3.9785 2.1765 0.0889 36 1 5.6419 -1.4183 1.4244 37 1 4.2143 2.4516 -2.1354 38 1 2.2775 1.2962 -3.1876 39 1 3.3796 0.0570 -3.8353 40 1 3.4216 3.0437 -4.4697 41 1 2.9568 1.7284 -5.5772 42 1 8.1313 -0.0317 -5.7020 43 1 6.4678 -0.6594 -5.9159 44 1 6.7500 2.1277 -8.7837 45 1 7.0115 1.7084 -4.4954 46 1 6.0681 3.0322 -3.7641 47 1 6.4134 1.2876 -2.0873 48 1 5.7737 0.0519 -3.1979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723648607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:50 Heat of formation + Delta-G solvation = -113.773801 kcal Electronic energy + Delta-G solvation = -31741.376039 eV Core-core repulsion = 27412.221172 eV Total energy + Delta-G solvation = -4329.154866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.02152 -39.96436 -37.86055 -37.26660 -36.95526 -35.11609 -34.90223 -32.32540 -31.20660 -30.73994 -29.69967 -28.20219 -25.73168 -25.54880 -24.44390 -23.21568 -22.82472 -22.58498 -21.04628 -20.20521 -19.14097 -18.42782 -18.02111 -17.03904 -16.64323 -16.26404 -15.79178 -15.66162 -15.22426 -15.10704 -14.88993 -14.66780 -14.45284 -14.13718 -14.06991 -13.95746 -13.73939 -13.59886 -13.38852 -13.22476 -12.70812 -12.37106 -12.04787 -11.86602 -11.69715 -11.49633 -11.08452 -10.98992 -10.90810 -10.86330 -10.84316 -10.75167 -10.55519 -10.46287 -10.15019 -9.97359 -9.89951 -9.60471 -9.39535 -8.89120 -8.66234 -8.44575 -6.59514 -5.78320 -3.35288 2.22359 2.30750 2.55482 2.82606 3.34557 3.38965 3.48157 3.51517 3.78808 4.04436 4.33557 4.48354 4.62462 4.72551 4.89522 4.95202 5.07694 5.18867 5.27002 5.33492 5.41430 5.52588 5.62660 5.69274 5.73293 5.84636 5.86070 5.96319 6.00930 6.08454 6.12977 6.27674 6.29738 6.48521 6.50071 6.55076 6.60589 6.65052 6.96170 6.98520 7.02415 7.26495 7.57828 7.83984 7.84274 7.94647 8.01159 8.53456 9.17321 9.81386 10.36103 11.23047 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.003302 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.921391 B = 8476.868891 C = 9433.893876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.046 3.954 4 C 0.144 3.856 5 N -0.571 5.571 6 C -0.235 4.235 7 H 0.055 0.945 8 C 0.022 3.978 9 N -0.891 5.891 10 Si 0.893 3.107 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.289 1.289 14 C 0.177 3.823 15 C -0.141 4.141 16 C 0.114 3.886 17 N -0.595 5.595 18 C 0.503 3.497 19 O -0.530 6.530 20 C 0.076 3.924 21 H 0.127 0.873 22 C 0.054 3.946 23 O -0.321 6.321 24 C 0.652 3.348 25 O -0.522 6.522 26 N -0.711 5.711 27 C 0.101 3.899 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.103 0.897 35 H 0.039 0.961 36 H 0.252 0.748 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.439 0.561 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 10.346 -5.494 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.033 4.033 4 C 0.017 3.983 5 N -0.290 5.290 6 C -0.365 4.365 7 H 0.072 0.928 8 C -0.178 4.178 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.222 1.222 13 H -0.216 1.216 14 C 0.069 3.931 15 C -0.182 4.182 16 C -0.008 4.008 17 N -0.329 5.329 18 C 0.288 3.712 19 O -0.406 6.406 20 C -0.034 4.034 21 H 0.145 0.855 22 C -0.021 4.021 23 O -0.231 6.231 24 C 0.404 3.596 25 O -0.406 6.406 26 N -0.383 5.383 27 C -0.022 4.022 28 C -0.174 4.174 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.121 0.879 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.141 0.859 43 H 0.133 0.867 44 H 0.282 0.718 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.097 0.903 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.024 9.512 -6.293 11.451 hybrid contribution -0.800 -0.202 0.293 0.876 sum 0.224 9.310 -6.000 11.078 Atomic orbital electron populations 1.22629 0.84266 1.01492 0.98373 1.88218 1.16504 1.27631 1.94806 1.23449 0.98973 0.84140 0.96726 1.21039 0.87396 0.96539 0.93277 1.43718 1.75242 1.02714 1.07323 1.18713 1.35771 0.81459 1.00565 0.92784 1.25003 0.96366 0.97393 0.98992 1.69949 1.34587 1.35563 1.13356 0.86402 0.77390 0.86023 0.77865 1.20320 1.22158 1.21573 1.20320 0.90958 0.93594 0.88214 1.22427 1.00766 1.00041 0.94933 1.21749 0.80521 0.99751 0.98828 1.48183 1.08780 1.67776 1.08139 1.20430 0.90186 0.77826 0.82804 1.90745 1.50380 1.50519 1.48961 1.22358 0.96429 1.00924 0.83731 0.85541 1.24325 1.03302 0.89957 0.84566 1.87308 1.79494 1.39008 1.17294 1.18434 0.76646 0.79360 0.85123 1.91078 1.57094 1.79205 1.13273 1.45664 1.68142 1.17237 1.07284 1.21979 0.89664 1.01135 0.89459 1.22223 0.99952 0.99909 0.95358 0.90750 0.95564 0.95321 0.95894 0.95563 0.87945 0.94282 0.93830 0.93465 0.91454 0.91286 0.91742 0.89675 0.85894 0.86689 0.71773 0.90810 0.91103 0.90266 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.35 -7.29 10.18 -35.23 -0.36 -7.65 16 3 C 0.05 0.85 6.28 37.16 0.23 1.09 16 4 C 0.14 2.97 5.70 -4.04 -0.02 2.95 16 5 N -0.57 -11.96 2.34 -165.61 -0.39 -12.34 16 6 C -0.24 -5.68 7.60 -15.06 -0.11 -5.80 16 7 H 0.05 1.37 7.09 -52.49 -0.37 1.00 16 8 C 0.02 0.57 4.97 -17.43 -0.09 0.48 16 9 N -0.89 -23.53 11.47 55.49 0.64 -22.90 16 10 Si 0.89 21.12 29.60 -169.99 -5.03 16.09 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 C 0.18 2.91 2.60 -67.89 -0.18 2.73 16 15 C -0.14 -2.18 5.38 -26.61 -0.14 -2.32 16 16 C 0.11 1.45 6.44 -3.71 -0.02 1.42 16 17 N -0.60 -6.86 2.98 -173.03 -0.52 -7.37 16 18 C 0.50 6.12 6.81 -10.98 -0.07 6.05 16 19 O -0.53 -8.55 16.00 5.56 0.09 -8.46 16 20 C 0.08 0.68 3.15 -68.19 -0.21 0.47 16 21 H 0.13 0.68 6.91 -51.93 -0.36 0.32 16 22 C 0.05 0.50 7.27 37.72 0.27 0.78 16 23 O -0.32 -4.24 11.09 -37.84 -0.42 -4.66 16 24 C 0.65 9.21 9.16 53.71 0.49 9.70 16 25 O -0.52 -9.25 18.04 -19.12 -0.34 -9.59 16 26 N -0.71 -7.57 5.65 -59.36 -0.34 -7.91 16 27 C 0.10 0.99 6.18 -3.94 -0.02 0.96 16 28 C -0.13 -1.94 5.21 -26.83 -0.14 -2.08 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 2.51 5.54 -51.93 -0.29 2.22 16 35 H 0.04 0.73 7.88 -51.93 -0.41 0.32 16 36 H 0.25 6.56 8.31 -40.82 -0.34 6.23 16 37 H 0.05 0.72 7.77 -51.93 -0.40 0.32 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.24 7.24 -51.93 -0.38 0.87 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.18 7.00 -51.93 -0.36 0.82 16 42 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.12 1.16 7.72 -51.93 -0.40 0.76 16 44 H 0.44 3.95 8.96 -40.82 -0.37 3.59 16 45 H 0.07 0.51 5.32 -51.93 -0.28 0.23 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 48 H 0.07 1.24 7.61 -51.93 -0.40 0.85 16 LS Contribution 385.21 15.07 5.81 5.81 Total: -1.00 -32.88 385.21 -7.14 -40.02 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.37 Total: 0.97 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 1.09 Total: 17.99 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.60 Total: -50.52 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -1.03 Total: -30.36 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.88 -7.14 -40.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723648607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.751 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds