Wall clock time and date at job start Sat Apr 11 2020 06:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00113 * 2 1 4 4 C 1.52999 * 109.47099 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47402 * 64.99885 * 4 3 2 6 6 C 1.36939 * 119.99803 * 269.99582 * 5 4 3 7 7 H 1.08000 * 120.00021 * 141.79682 * 6 5 4 8 8 C 1.38815 * 120.00164 * 321.80491 * 6 5 4 9 9 N 1.31614 * 119.99854 * 339.27173 * 8 6 5 10 10 Si 1.86801 * 120.00050 * 159.27435 * 8 6 5 11 11 H 1.48500 * 109.46935 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47290 * 119.99854 * 10 8 6 13 13 H 1.48503 * 109.47068 * 239.99915 * 10 8 6 14 14 C 1.46503 * 120.00342 * 89.99987 * 5 4 3 15 15 C 1.53037 * 109.46001 * 244.77276 * 14 5 4 16 16 C 1.53189 * 109.31531 * 178.62726 * 15 14 5 17 17 N 1.46925 * 108.77519 * 54.62985 * 16 15 14 18 18 C 1.34779 * 120.62929 * 126.37060 * 17 16 15 19 19 O 1.21283 * 119.99932 * 0.02562 * 18 17 16 20 20 C 1.50703 * 120.00114 * 180.02562 * 18 17 16 21 21 H 1.09002 * 110.50142 * 319.29663 * 20 18 17 22 22 C 1.54080 * 110.56582 * 82.03865 * 20 18 17 23 23 O 1.45700 * 104.00960 * 118.72307 * 22 20 18 24 24 C 1.33773 * 109.47347 * 359.97438 * 23 22 20 25 25 O 1.21512 * 123.07190 * 179.97438 * 24 23 22 26 26 N 1.34000 * 113.85850 * 0.02562 * 24 23 22 27 27 C 1.46921 * 118.74140 * 306.64984 * 17 16 15 28 28 C 1.52758 * 109.01131 * 53.30642 * 27 17 16 29 29 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46854 * 299.99932 * 1 2 3 31 31 H 1.08991 * 109.47246 * 60.00253 * 1 2 3 32 32 H 1.08992 * 109.47572 * 59.99634 * 3 2 1 33 33 H 1.09005 * 109.46822 * 299.99854 * 3 2 1 34 34 H 1.08998 * 109.47143 * 304.99229 * 4 3 2 35 35 H 1.09006 * 109.46869 * 184.99950 * 4 3 2 36 36 H 0.97002 * 119.99731 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.45249 * 4.74453 * 14 5 4 38 38 H 1.09005 * 109.49801 * 58.67501 * 15 14 5 39 39 H 1.09001 * 109.52321 * 298.59282 * 15 14 5 40 40 H 1.09003 * 109.58425 * 294.84803 * 16 15 14 41 41 H 1.09001 * 109.70600 * 174.49301 * 16 15 14 42 42 H 1.09003 * 110.52212 * 237.34862 * 22 20 18 43 43 H 1.08998 * 110.52824 * 359.95366 * 22 20 18 44 44 H 0.97006 * 125.56070 * 180.02562 * 26 24 23 45 45 H 1.09005 * 109.58887 * 173.14110 * 27 17 16 46 46 H 1.08997 * 109.58946 * 293.56431 * 27 17 16 47 47 H 1.09001 * 109.56941 * 185.55861 * 28 27 17 48 48 H 1.09001 * 109.38692 * 65.51489 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0968 -0.7971 -1.3367 7 1 3.8120 -1.3096 -2.2437 8 6 4.5857 -1.5185 -0.2562 9 7 5.3006 -0.9143 0.6691 10 14 4.2288 -3.3466 -0.1153 11 1 3.4100 -3.7819 -1.2752 12 1 5.5078 -4.1010 -0.1008 13 1 3.4843 -3.6102 1.1423 14 6 4.2865 1.4005 -2.4148 15 6 3.2912 1.1021 -3.5384 16 6 3.5978 2.0024 -4.7393 17 7 5.0063 1.8231 -5.1173 18 6 5.3423 1.5044 -6.3830 19 8 4.4785 1.3632 -7.2225 20 6 6.7915 1.3233 -6.7550 21 1 7.4073 2.0820 -6.2721 22 6 7.2755 -0.0892 -6.3747 23 8 7.6650 -0.6830 -7.6469 24 6 7.4595 0.1984 -8.6320 25 8 7.7021 -0.0419 -9.7981 26 7 6.9627 1.3710 -8.2151 27 6 6.0410 1.9918 -4.0879 28 6 5.7073 1.0971 -2.8956 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.8515 0.5683 0.8410 35 1 3.9785 2.1765 0.0889 36 1 5.6419 -1.4183 1.4244 37 1 4.2143 2.4516 -2.1354 38 1 2.2775 1.2962 -3.1876 39 1 3.3796 0.0570 -3.8353 40 1 3.4216 3.0437 -4.4697 41 1 2.9568 1.7284 -5.5772 42 1 8.1313 -0.0317 -5.7020 43 1 6.4678 -0.6594 -5.9159 44 1 6.7500 2.1277 -8.7837 45 1 7.0115 1.7084 -4.4954 46 1 6.0681 3.0322 -3.7641 47 1 6.4134 1.2876 -2.0873 48 1 5.7737 0.0519 -3.1979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723648607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:49 Heat of formation + Delta-G solvation = -139.026453 kcal Electronic energy + Delta-G solvation = -31742.471076 eV Core-core repulsion = 27412.221172 eV Total energy + Delta-G solvation = -4330.249904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.95937 -41.00443 -39.19247 -38.42434 -38.25568 -36.54790 -35.82789 -33.82073 -32.50670 -32.06232 -30.65880 -29.67429 -27.14679 -26.72344 -25.68393 -24.49337 -23.91391 -23.56700 -22.39319 -21.60751 -20.27084 -19.32266 -18.99256 -18.19646 -17.89711 -17.55363 -17.20738 -16.73075 -16.61134 -16.50989 -16.21737 -15.71040 -15.62099 -15.45576 -15.33475 -15.13530 -15.07575 -14.67782 -14.52082 -14.31193 -13.84409 -13.42294 -13.35600 -13.22541 -13.10655 -12.85702 -12.72051 -12.55293 -12.31042 -12.20919 -12.10323 -12.00678 -11.93289 -11.75818 -11.52115 -11.47747 -11.40890 -11.03272 -10.36491 -10.34548 -10.26345 -9.67276 -8.37656 -7.67042 -5.24680 1.29276 1.33916 1.45174 1.52381 1.57641 1.60463 1.89659 2.51810 2.60629 3.02016 3.17646 3.24773 3.43919 3.67528 3.70601 3.88163 4.06586 4.18874 4.29451 4.34795 4.40053 4.44715 4.46267 4.52552 4.55962 4.65536 4.69424 4.78131 4.83691 4.87181 4.89276 4.95114 4.95708 5.06870 5.18812 5.27400 5.48066 5.64109 5.68686 5.77745 5.81832 5.93280 6.03525 6.32940 6.56117 6.72841 6.86134 6.99795 7.35446 8.05524 8.53701 9.28323 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.003302 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.921391 B = 8476.868891 C = 9433.893876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.053 3.947 4 C 0.141 3.859 5 N -0.584 5.584 6 C -0.212 4.212 7 H 0.036 0.964 8 C -0.018 4.018 9 N -0.912 5.912 10 Si 0.927 3.073 11 H -0.282 1.282 12 H -0.295 1.295 13 H -0.300 1.300 14 C 0.170 3.830 15 C -0.128 4.128 16 C 0.122 3.878 17 N -0.592 5.592 18 C 0.502 3.498 19 O -0.575 6.575 20 C 0.084 3.916 21 H 0.181 0.819 22 C 0.048 3.952 23 O -0.339 6.339 24 C 0.648 3.352 25 O -0.569 6.569 26 N -0.697 5.697 27 C 0.108 3.892 28 C -0.127 4.127 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.245 0.755 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.033 0.967 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.167 0.833 43 H 0.102 0.898 44 H 0.446 0.554 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.067 0.933 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 12.976 -5.577 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.026 4.026 4 C 0.015 3.985 5 N -0.303 5.303 6 C -0.343 4.343 7 H 0.054 0.946 8 C -0.215 4.215 9 N -0.557 5.557 10 Si 0.758 3.242 11 H -0.208 1.208 12 H -0.222 1.222 13 H -0.228 1.228 14 C 0.064 3.936 15 C -0.168 4.168 16 C -0.001 4.001 17 N -0.324 5.324 18 C 0.288 3.712 19 O -0.454 6.454 20 C -0.025 4.025 21 H 0.198 0.802 22 C -0.027 4.027 23 O -0.248 6.248 24 C 0.401 3.599 25 O -0.457 6.457 26 N -0.369 5.369 27 C -0.014 4.014 28 C -0.167 4.167 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.184 0.816 43 H 0.120 0.880 44 H 0.291 0.709 45 H 0.131 0.869 46 H 0.120 0.880 47 H 0.086 0.914 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.610 12.177 -6.350 13.827 hybrid contribution -1.127 -1.005 0.367 1.554 sum 0.482 11.172 -5.983 12.682 Atomic orbital electron populations 1.22785 0.81892 1.02361 0.99955 1.88141 1.19288 1.29063 1.95166 1.23327 0.97289 0.83759 0.98236 1.20972 0.89184 0.96529 0.91849 1.43871 1.75668 1.02108 1.08680 1.18601 1.33211 0.83295 0.99232 0.94627 1.25307 0.97612 0.98873 0.99671 1.70023 1.36244 1.35726 1.13743 0.85863 0.76844 0.84602 0.76849 1.20768 1.22231 1.22778 1.20567 0.92383 0.93914 0.86736 1.22220 1.00174 0.98594 0.95808 1.21587 0.81350 1.00366 0.96790 1.48223 1.08631 1.67151 1.08438 1.20957 0.91200 0.76617 0.82386 1.90739 1.52040 1.52380 1.50276 1.22632 0.94835 1.02243 0.82825 0.80166 1.24706 1.04799 0.89604 0.83571 1.87279 1.79424 1.39641 1.18489 1.18578 0.76538 0.80016 0.84727 1.91033 1.59204 1.80209 1.15277 1.45621 1.66697 1.16264 1.08331 1.22084 0.90528 1.01681 0.87131 1.22043 0.98153 0.99431 0.97044 0.90392 0.93595 0.93951 0.93931 0.94192 0.91835 0.92305 0.94593 0.91235 0.92261 0.94804 0.88941 0.91119 0.81563 0.87968 0.70859 0.86911 0.88044 0.91412 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -16.17 10.18 -148.98 -1.52 -17.69 16 3 C 0.05 1.86 6.28 71.98 0.45 2.31 16 4 C 0.14 5.71 5.70 86.38 0.49 6.20 16 5 N -0.58 -24.13 2.34 -677.88 -1.59 -25.72 16 6 C -0.21 -10.39 7.60 84.03 0.64 -9.75 16 7 H 0.04 1.87 7.09 -2.91 -0.02 1.85 16 8 C -0.02 -0.92 4.97 84.86 0.42 -0.50 16 9 N -0.91 -49.02 11.47 21.65 0.25 -48.77 16 10 Si 0.93 44.33 29.60 68.60 2.03 46.36 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 12 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 13 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 14 C 0.17 5.27 2.60 45.02 0.12 5.39 16 15 C -0.13 -3.80 5.38 30.67 0.16 -3.63 16 16 C 0.12 2.81 6.44 86.36 0.56 3.36 16 17 N -0.59 -11.63 2.98 -819.74 -2.44 -14.07 16 18 C 0.50 10.81 6.81 87.66 0.60 11.40 16 19 O -0.57 -17.85 16.00 -3.04 -0.05 -17.90 16 20 C 0.08 1.18 3.15 44.50 0.14 1.32 16 21 H 0.18 0.71 6.91 -2.39 -0.02 0.69 16 22 C 0.05 0.74 7.27 72.35 0.53 1.27 16 23 O -0.34 -8.48 11.09 -47.33 -0.52 -9.01 16 24 C 0.65 17.69 9.16 129.91 1.19 18.88 16 25 O -0.57 -20.32 18.04 19.65 0.35 -19.96 16 26 N -0.70 -13.21 5.65 -573.44 -3.24 -16.45 16 27 C 0.11 1.59 6.18 86.22 0.53 2.12 16 28 C -0.13 -3.36 5.21 30.53 0.16 -3.20 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.06 3.15 5.54 -2.39 -0.01 3.13 16 35 H 0.06 2.09 7.88 -2.38 -0.02 2.07 16 36 H 0.24 13.08 8.31 -92.71 -0.77 12.31 16 37 H 0.07 1.87 7.77 -2.39 -0.02 1.86 16 38 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.03 1.23 7.24 -2.39 -0.02 1.21 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 1.88 7.00 -2.39 -0.02 1.87 16 42 H 0.17 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 1.89 7.72 -2.39 -0.02 1.87 16 44 H 0.45 7.07 8.96 -92.70 -0.83 6.24 16 45 H 0.11 0.84 5.32 -2.38 -0.01 0.82 16 46 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.05 1.49 7.61 -2.39 -0.02 1.48 16 Total: -1.00 -76.75 385.21 0.67 -76.09 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.15 Total: 9.91 kcal Atomic # 6 Polarization: 29.97 SS G_CDS: 7.24 Total: 37.20 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -7.02 Total: -105.00 kcal Atomic # 8 Polarization: -62.83 SS G_CDS: -1.74 Total: -64.56 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -76.75 0.67 -76.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723648607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.940 kcal (2) G-P(sol) polarization free energy of solvation -76.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds