Wall clock time and date at job start Sat Apr 11 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46797 * 223.84607 * 3 2 1 5 5 N 1.46501 * 109.47053 * 180.02562 * 4 3 2 6 6 C 1.46507 * 119.99691 * 270.00297 * 5 4 3 7 7 C 1.50706 * 109.46637 * 269.99715 * 6 5 4 8 8 H 1.07993 * 120.00505 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99539 * 180.02562 * 7 6 5 10 10 N 1.31524 * 119.99975 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99868 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46971 * 90.00326 * 11 9 7 13 13 H 1.48501 * 109.47300 * 210.00074 * 11 9 7 14 14 H 1.48491 * 109.47288 * 330.00294 * 11 9 7 15 15 C 1.34774 * 119.99906 * 90.00473 * 5 4 3 16 16 O 1.21284 * 119.99870 * 180.02562 * 15 5 4 17 17 C 1.50697 * 120.00009 * 359.97438 * 15 5 4 18 18 N 1.46904 * 109.47046 * 186.19101 * 17 15 5 19 19 C 1.47907 * 110.99776 * 65.70711 * 18 17 15 20 20 C 1.53996 * 107.05607 * 145.84208 * 19 18 17 21 21 C 1.54594 * 105.14100 * 358.77674 * 20 19 18 22 22 C 1.48527 * 111.00136 * 183.10016 * 18 17 15 23 23 H 1.09001 * 110.67256 * 318.72061 * 22 18 17 24 24 C 1.50707 * 110.66307 * 81.84658 * 22 18 17 25 25 C 1.38235 * 120.00076 * 34.98847 * 24 22 18 26 26 C 1.38229 * 119.99999 * 179.80865 * 25 24 22 27 27 C 1.38239 * 119.99882 * 0.42123 * 26 25 24 28 28 C 1.38235 * 120.00151 * 359.80775 * 27 26 25 29 29 C 1.38235 * 119.99935 * 0.02562 * 28 27 26 30 30 H 1.08997 * 109.46788 * 103.85316 * 3 2 1 31 31 H 1.09003 * 109.47127 * 343.84808 * 3 2 1 32 32 H 1.09010 * 109.47018 * 60.00425 * 4 3 2 33 33 H 1.09000 * 109.47354 * 300.00532 * 4 3 2 34 34 H 1.08999 * 109.47391 * 29.99759 * 6 5 4 35 35 H 1.09000 * 109.46360 * 150.00333 * 6 5 4 36 36 H 0.96993 * 119.99530 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.47030 * 66.19252 * 17 15 5 38 38 H 1.09000 * 109.47255 * 306.19066 * 17 15 5 39 39 H 1.09001 * 109.91689 * 26.49414 * 19 18 17 40 40 H 1.08992 * 110.08356 * 265.28894 * 19 18 17 41 41 H 1.09000 * 110.31149 * 239.85753 * 20 19 18 42 42 H 1.08996 * 110.30626 * 117.69347 * 20 19 18 43 43 H 1.09001 * 110.72159 * 96.39727 * 21 20 19 44 44 H 1.08993 * 110.72403 * 219.68518 * 21 20 19 45 45 H 1.07995 * 119.99559 * 359.97438 * 25 24 22 46 46 H 1.08002 * 119.99996 * 180.20933 * 26 25 24 47 47 H 1.08004 * 119.99760 * 179.78914 * 27 26 25 48 48 H 1.07995 * 120.00187 * 179.97438 * 28 27 26 49 49 H 1.07995 * 119.99802 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1175 1.0412 0.9993 5 7 4.5825 1.0424 0.9989 6 6 5.3159 0.1638 1.9136 7 6 5.5669 0.8872 3.2116 8 1 5.2149 1.8998 3.3423 9 6 6.2458 0.2562 4.2323 10 7 6.6749 -0.9769 4.0729 11 14 6.5575 1.1530 5.8410 12 1 5.4284 0.9047 6.7730 13 1 7.8187 0.6568 6.4481 14 1 6.6734 2.6103 5.5809 15 6 5.2555 1.8516 0.1571 16 8 6.4683 1.8522 0.1564 17 6 4.5010 2.7549 -0.7841 18 7 5.4480 3.4188 -1.6900 19 6 6.1042 2.4385 -2.5821 20 6 6.3350 3.1408 -3.9330 21 6 5.7432 4.5582 -3.7575 22 6 4.7473 4.3750 -2.5849 23 1 3.8080 3.9516 -2.9405 24 6 4.5085 5.6856 -1.8802 25 6 5.4401 6.1654 -0.9786 26 6 5.2229 7.3694 -0.3353 27 6 4.0699 8.0894 -0.5869 28 6 3.1361 7.6073 -1.4849 29 6 3.3549 6.4049 -2.1309 30 1 2.9712 0.2469 -0.9978 31 1 2.9718 -0.9863 0.2859 32 1 2.7543 0.7950 1.9971 33 1 2.7536 2.0281 0.7134 34 1 4.7276 -0.7335 2.1055 35 1 6.2684 -0.1156 1.4632 36 1 7.1528 -1.4206 4.7909 37 1 3.9593 3.5067 -0.2101 38 1 3.7945 2.1638 -1.3668 39 1 5.4582 1.5714 -2.7201 40 1 7.0585 2.1266 -2.1579 41 1 5.8143 2.6094 -4.7296 42 1 7.4012 3.2004 -4.1511 43 1 6.5235 5.2719 -3.4929 44 1 5.2213 4.8729 -4.6611 45 1 6.3388 5.6009 -0.7790 46 1 5.9523 7.7459 0.3666 47 1 3.8986 9.0285 -0.0816 48 1 2.2352 8.1696 -1.6812 49 1 2.6251 6.0281 -2.8321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054984098.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:50 Heat of formation + Delta-G solvation = 27.372269 kcal Electronic energy + Delta-G solvation = -29877.684874 eV Core-core repulsion = 25997.792575 eV Total energy + Delta-G solvation = -3879.892299 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.19171 -39.07998 -37.84873 -36.82220 -35.18077 -32.98789 -32.17495 -31.93389 -30.85826 -30.82862 -27.97881 -27.72328 -25.91211 -23.99954 -23.05390 -22.59810 -22.28100 -20.93355 -20.15416 -18.47751 -17.57543 -17.13458 -16.57566 -16.37968 -16.13748 -15.66367 -15.30804 -14.82108 -14.72616 -14.67593 -14.44766 -14.07347 -13.76722 -13.58374 -13.35849 -13.26195 -12.94021 -12.85048 -12.64718 -12.44322 -12.29371 -12.18104 -12.13020 -11.75511 -11.74223 -11.33323 -11.25933 -11.24358 -11.01152 -10.97936 -10.84129 -10.82872 -10.61760 -10.60008 -10.17027 -9.68312 -8.99886 -8.89892 -8.69190 -8.45783 -8.32473 -7.80916 -6.07437 -4.11589 1.32096 1.43674 2.70806 2.78735 3.29554 3.33136 3.37153 3.42108 3.50786 3.75660 3.95034 4.23040 4.43209 4.60001 4.65220 4.84188 4.89639 4.93177 4.97641 4.99882 5.10360 5.13613 5.17019 5.22856 5.27809 5.29744 5.44293 5.47351 5.50601 5.55818 5.64594 5.72264 5.74525 5.81719 5.88650 5.98208 6.04669 6.06653 6.11664 6.27304 6.44419 6.56706 6.58516 6.85739 6.94433 7.03854 7.08110 7.37137 7.45893 7.55160 7.89247 8.19180 8.28922 8.87339 9.03737 9.54039 11.00686 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008151 B = 0.003622 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3434.427943 B = 7728.117735 C = 8661.785041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.217 3.783 3 C -0.050 4.050 4 C 0.118 3.882 5 N -0.600 5.600 6 C 0.247 3.753 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.510 3.490 16 O -0.513 6.513 17 C 0.027 3.973 18 N -0.488 5.488 19 C 0.041 3.959 20 C -0.131 4.131 21 C -0.110 4.110 22 C 0.102 3.898 23 H 0.060 0.940 24 C -0.074 4.074 25 C -0.084 4.084 26 C -0.124 4.124 27 C -0.123 4.123 28 C -0.127 4.127 29 C -0.118 4.118 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.046 0.954 36 H 0.263 0.737 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.136 0.864 46 H 0.120 0.880 47 H 0.117 0.883 48 H 0.117 0.883 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.614 11.536 -16.074 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.008 4.008 5 N -0.333 5.333 6 C 0.128 3.872 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.295 3.705 16 O -0.388 6.388 17 C -0.105 4.105 18 N -0.212 5.212 19 C -0.086 4.086 20 C -0.170 4.170 21 C -0.149 4.149 22 C -0.007 4.007 23 H 0.078 0.922 24 C -0.074 4.074 25 C -0.102 4.102 26 C -0.142 4.142 27 C -0.142 4.142 28 C -0.145 4.145 29 C -0.137 4.137 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.153 0.847 46 H 0.138 0.862 47 H 0.135 0.865 48 H 0.135 0.865 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.134 11.613 -15.630 20.415 hybrid contribution -0.198 -0.051 0.649 0.680 sum -6.332 11.562 -14.981 19.955 Atomic orbital electron populations 1.81208 1.13027 1.09018 1.08974 1.29113 0.95109 0.92966 0.92951 1.19910 0.81346 1.04711 1.03202 1.21281 0.82488 0.97308 0.99772 1.48217 1.04656 1.41920 1.38473 1.19320 0.92510 0.88226 0.87134 1.21421 1.36509 1.00328 0.98271 0.92397 1.24906 0.95311 0.94909 0.98809 1.69921 1.38326 1.11806 1.33298 0.86530 0.77673 0.80108 0.83339 1.20693 1.21124 1.19859 1.20112 0.88258 0.80811 0.81305 1.90682 1.13471 1.66006 1.68596 1.22316 0.94371 0.97776 0.96035 1.64418 1.26089 1.14506 1.16163 1.22881 1.01192 0.93255 0.91321 1.22444 1.01776 0.95588 0.97153 1.22482 0.98227 0.97528 0.96616 1.21668 0.96388 0.90712 0.91893 0.92205 1.19625 0.94566 0.95497 0.97735 1.21185 0.99739 0.94741 0.94542 1.21243 0.97630 0.95395 0.99968 1.21142 0.94605 0.99920 0.98494 1.21028 0.99320 0.96446 0.97696 1.20969 0.96938 0.95491 1.00292 0.87876 0.86439 0.88730 0.90871 0.94862 0.93603 0.92720 0.88314 0.92667 0.94120 0.88632 0.91681 0.90810 0.90405 0.91077 0.84650 0.86184 0.86516 0.86464 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.54 18.54 42.15 0.78 -5.76 16 2 C 0.22 2.62 15.43 -20.76 -0.32 2.30 16 3 C -0.05 -0.53 5.97 -29.52 -0.18 -0.70 16 4 C 0.12 1.59 5.08 -4.04 -0.02 1.57 16 5 N -0.60 -10.90 2.46 -175.05 -0.43 -11.33 16 6 C 0.25 5.81 5.16 -5.19 -0.03 5.78 16 7 C -0.53 -14.08 9.39 -34.44 -0.32 -14.40 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.72 5.46 -17.81 -0.10 1.63 16 10 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 11 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.51 9.32 7.36 -10.99 -0.08 9.24 16 16 O -0.51 -11.67 14.62 5.55 0.08 -11.59 16 17 C 0.03 0.36 3.63 -4.98 -0.02 0.34 16 18 N -0.49 -6.46 3.83 -225.42 -0.86 -7.32 16 19 C 0.04 0.51 5.65 -2.75 -0.02 0.50 16 20 C -0.13 -1.25 6.93 -25.37 -0.18 -1.43 16 21 C -0.11 -1.04 6.49 -24.87 -0.16 -1.20 16 22 C 0.10 1.09 2.50 -66.94 -0.17 0.92 16 23 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 24 C -0.07 -0.84 4.71 -104.62 -0.49 -1.33 16 25 C -0.08 -1.05 9.32 -39.59 -0.37 -1.42 16 26 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 27 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 28 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 29 C -0.12 -1.20 9.69 -39.58 -0.38 -1.59 16 30 H 0.10 0.88 7.12 -51.93 -0.37 0.51 16 31 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.09 1.36 8.07 -51.92 -0.42 0.94 16 33 H 0.07 0.84 6.61 -51.93 -0.34 0.50 16 34 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.05 1.23 7.42 -51.93 -0.39 0.85 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.10 1.33 7.47 -51.93 -0.39 0.94 16 38 H 0.06 0.60 6.65 -51.93 -0.35 0.26 16 39 H 0.04 0.48 7.64 -51.93 -0.40 0.09 16 40 H 0.10 1.45 7.33 -51.93 -0.38 1.07 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.14 1.89 7.61 -52.49 -0.40 1.49 16 46 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 47 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 49 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 407.36 15.07 6.14 6.14 Total: -1.00 -32.55 407.36 -10.20 -42.75 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.60 Total: 0.49 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -4.02 Total: -4.92 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.23 Total: -49.21 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.55 -10.20 -42.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054984098.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.119 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds