Wall clock time and date at job start Sat Apr 11 2020 06:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86801 * 120.00140 * 2 1 4 4 H 1.48498 * 109.46975 * 239.99835 * 3 2 1 5 5 H 1.48500 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46793 * 120.00022 * 3 2 1 7 7 C 1.38797 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00128 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00296 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47236 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47289 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47306 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99903 * 169.99683 * 13 12 11 15 15 C 1.53246 * 109.34053 * 172.74709 * 14 13 12 16 16 N 1.47079 * 108.51891 * 53.82944 * 15 14 13 17 17 C 1.34779 * 120.87695 * 128.83938 * 16 15 14 18 18 O 1.21275 * 120.00216 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99493 * 179.97438 * 17 16 15 20 20 N 1.46905 * 109.46738 * 179.97438 * 19 17 16 21 21 C 1.48535 * 110.99855 * 52.60449 * 20 19 17 22 22 C 1.54943 * 103.22379 * 159.72051 * 21 20 19 23 23 C 1.54590 * 102.92090 * 322.58519 * 22 21 20 24 24 C 1.47906 * 110.99739 * 169.99988 * 20 19 17 25 25 C 1.47079 * 118.23968 * 308.81972 * 16 15 14 26 26 C 1.46899 * 111.00000 * 45.69622 * 13 12 11 27 27 H 0.97002 * 119.99412 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46544 * 60.00040 * 10 9 7 29 29 H 1.08999 * 109.47348 * 300.00231 * 10 9 7 30 30 H 1.08999 * 109.47250 * 60.00042 * 11 10 9 31 31 H 1.09001 * 109.47160 * 299.99862 * 11 10 9 32 32 H 1.08999 * 109.47177 * 59.99707 * 12 11 10 33 33 H 1.08999 * 109.47084 * 300.00203 * 12 11 10 34 34 H 1.09004 * 109.49347 * 52.78751 * 14 13 12 35 35 H 1.08996 * 109.49651 * 292.70402 * 14 13 12 36 36 H 1.08995 * 109.62645 * 173.54040 * 15 14 13 37 37 H 1.09001 * 109.62776 * 294.12271 * 15 14 13 38 38 H 1.08996 * 109.47263 * 299.99603 * 19 17 16 39 39 H 1.08999 * 109.47541 * 60.00600 * 19 17 16 40 40 H 1.08997 * 110.66767 * 278.14999 * 21 20 19 41 41 H 1.08993 * 110.66652 * 41.28719 * 21 20 19 42 42 H 1.09002 * 110.71936 * 204.22508 * 22 21 20 43 43 H 1.08996 * 110.72344 * 80.94539 * 22 21 20 44 44 H 1.09005 * 110.30818 * 263.04150 * 23 22 21 45 45 H 1.09000 * 110.31082 * 140.87627 * 23 22 21 46 46 H 1.08994 * 109.91817 * 333.51260 * 24 20 19 47 47 H 1.08999 * 109.91445 * 94.60690 * 24 20 19 48 48 H 1.09004 * 109.62584 * 291.47011 * 25 16 15 49 49 H 1.08998 * 109.62928 * 170.89652 * 25 16 15 50 50 H 1.08997 * 109.49696 * 307.21794 * 26 13 12 51 51 H 1.09004 * 109.49043 * 67.29758 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2855 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0029 11 6 1.9792 -5.3242 -0.0036 12 6 3.1512 -6.3078 -0.0038 13 7 2.6360 -7.6835 -0.0038 14 6 3.7161 -8.6501 -0.2422 15 6 3.1753 -10.0718 -0.0555 16 7 1.9918 -10.2377 -0.9127 17 6 1.8875 -11.2867 -1.7525 18 8 2.7770 -12.1092 -1.8088 19 6 0.6656 -11.4376 -2.6216 20 7 0.7935 -12.6509 -3.4398 21 6 1.0986 -13.8334 -2.5942 22 6 0.6802 -15.0268 -3.4894 23 6 -0.5865 -14.4980 -4.2006 24 6 -0.4786 -12.9637 -4.1264 25 6 0.9248 -9.2289 -0.8289 26 6 1.5542 -7.8405 -0.9851 27 1 -0.4849 0.8401 -0.0004 28 1 3.1243 -3.7322 0.8872 29 1 3.1244 -3.7307 -0.8927 30 1 1.3703 -5.4838 -0.8935 31 1 1.3708 -5.4848 0.8865 32 1 3.7597 -6.1481 0.8863 33 1 3.7599 -6.1474 -0.8936 34 1 4.5257 -8.4730 0.4659 35 1 4.0902 -8.5341 -1.2594 36 1 3.9392 -10.7946 -0.3419 37 1 2.8963 -10.2233 0.9873 38 1 -0.2207 -11.5153 -1.9919 39 1 0.5735 -10.5686 -3.2731 40 1 2.1634 -13.8786 -2.3658 41 1 0.5081 -13.8140 -1.6783 42 1 0.4452 -15.9008 -2.8820 43 1 1.4612 -15.2579 -4.2138 44 1 -1.4821 -14.8398 -3.6817 45 1 -0.6019 -14.8264 -5.2398 46 1 -1.3164 -12.5595 -3.5583 47 1 -0.4724 -12.5399 -5.1307 48 1 0.4294 -9.2995 0.1395 49 1 0.2007 -9.3946 -1.6265 50 1 0.7958 -7.0761 -0.8159 51 1 1.9584 -7.7357 -1.9920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080628252.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:58 Heat of formation + Delta-G solvation = -19.308868 kcal Electronic energy + Delta-G solvation = -27247.573053 eV Core-core repulsion = 23501.100459 eV Total energy + Delta-G solvation = -3746.472594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73322 -39.17792 -37.98813 -35.46664 -33.10995 -32.48691 -32.34027 -31.30331 -29.15066 -28.47213 -26.69599 -25.64964 -24.31306 -24.12830 -22.03997 -21.35525 -21.15318 -20.57757 -19.14186 -17.60683 -17.44443 -16.77622 -16.14145 -16.00800 -15.54119 -15.44017 -15.25671 -15.05919 -14.82314 -14.61973 -14.29693 -13.96058 -13.93706 -13.58342 -13.28197 -12.98248 -12.77065 -12.54081 -12.49380 -12.07963 -12.01763 -11.87764 -11.80780 -11.67990 -11.54883 -11.41289 -11.25729 -11.10957 -11.06004 -10.93923 -10.81181 -10.64264 -10.36473 -9.82850 -9.57687 -9.07618 -9.04213 -8.76851 -8.41680 -8.34578 -6.56008 -6.25264 -3.95839 2.32759 2.55967 3.19463 3.21595 3.26174 3.48504 3.62876 3.77704 4.07869 4.20209 4.30115 4.47038 4.58204 4.61091 4.70826 4.82041 4.87542 4.92136 4.93939 4.97728 5.07375 5.10933 5.16977 5.20395 5.26902 5.30134 5.31831 5.44006 5.45172 5.48118 5.49442 5.56971 5.61842 5.64978 5.67307 5.76206 5.82587 5.87734 5.90388 6.04678 6.19284 6.24534 6.50913 6.51064 6.52974 6.65928 6.87758 6.90732 7.12846 7.57990 7.90400 8.34006 9.21127 10.82837 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.001674 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.754469 B =16720.126014 C =17550.654521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.072 0.928 9 S -0.132 6.132 10 C -0.113 4.113 11 C -0.101 4.101 12 C 0.060 3.940 13 N -0.536 5.536 14 C 0.041 3.959 15 C 0.119 3.881 16 N -0.614 5.614 17 C 0.517 3.483 18 O -0.529 6.529 19 C 0.028 3.972 20 N -0.503 5.503 21 C 0.031 3.969 22 C -0.126 4.126 23 C -0.131 4.131 24 C 0.033 3.967 25 C 0.111 3.889 26 C 0.030 3.970 27 H 0.268 0.732 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.087 0.913 35 H 0.038 0.962 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.103 0.897 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 -27.653 -4.461 28.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.666 4.666 8 H 0.090 0.910 9 S 0.096 5.904 10 C -0.263 4.263 11 C -0.139 4.139 12 C -0.068 4.068 13 N -0.261 5.261 14 C -0.088 4.088 15 C -0.004 4.004 16 N -0.349 5.349 17 C 0.305 3.695 18 O -0.406 6.406 19 C -0.104 4.104 20 N -0.227 5.227 21 C -0.096 4.096 22 C -0.164 4.164 23 C -0.170 4.170 24 C -0.094 4.094 25 C -0.013 4.013 26 C -0.098 4.098 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.121 0.879 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.433 -28.151 -4.406 28.497 hybrid contribution 1.450 1.648 -0.176 2.203 sum 1.018 -26.503 -4.582 26.915 Atomic orbital electron populations 1.70013 1.05908 1.27449 1.47160 1.25011 0.95086 0.99076 0.94563 0.86224 0.79251 0.81213 0.78859 1.19953 1.20792 1.19920 1.22648 0.94487 0.90789 1.58646 0.91015 1.84577 1.09480 0.99441 1.96871 1.23227 1.02945 0.97243 1.02838 1.21447 0.97031 0.92398 1.03052 1.22213 0.97442 0.86234 1.00955 1.62015 1.10281 1.04585 1.49249 1.22479 0.94032 0.91803 1.00471 1.21692 0.87812 0.96396 0.94467 1.48211 1.21006 1.24827 1.40806 1.20456 0.88524 0.80857 0.79661 1.90624 1.41269 1.41348 1.67318 1.22265 0.95574 0.96463 0.96060 1.64699 1.29811 1.02029 1.26211 1.23527 1.03823 0.88497 0.93765 1.22529 0.97417 0.97558 0.98929 1.22395 0.98401 0.94645 1.01510 1.22944 0.90306 0.96158 1.00026 1.21944 0.89290 0.86960 1.03060 1.22658 0.95906 0.97131 0.94143 0.92244 0.92024 0.92327 0.91399 0.90603 0.90404 0.94822 0.89431 0.94397 0.88763 0.90674 0.91666 0.87611 0.87040 0.94557 0.91171 0.90693 0.91531 0.90917 0.93639 0.90033 0.90118 0.89550 0.87865 0.94243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.68 9.50 30.94 0.29 -14.38 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.13 -3.37 21.44 -107.50 -2.30 -5.67 16 10 C -0.11 -2.20 5.67 37.15 0.21 -1.99 16 11 C -0.10 -1.52 4.47 -26.73 -0.12 -1.64 16 12 C 0.06 0.75 5.27 -3.82 -0.02 0.73 16 13 N -0.54 -5.90 4.78 -234.32 -1.12 -7.02 16 14 C 0.04 0.40 5.58 -3.70 -0.02 0.38 16 15 C 0.12 1.13 6.60 -3.60 -0.02 1.11 16 16 N -0.61 -5.88 3.01 -172.46 -0.52 -6.40 16 17 C 0.52 5.53 7.42 -10.98 -0.08 5.45 16 18 O -0.53 -7.22 12.97 5.56 0.07 -7.14 16 19 C 0.03 0.23 3.88 -4.97 -0.02 0.21 16 20 N -0.50 -4.74 5.26 -231.89 -1.22 -5.96 16 21 C 0.03 0.29 5.30 -1.89 -0.01 0.28 16 22 C -0.13 -0.92 7.06 -24.87 -0.18 -1.09 16 23 C -0.13 -0.82 6.93 -25.38 -0.18 -1.00 16 24 C 0.03 0.24 6.70 -2.75 -0.02 0.22 16 25 C 0.11 0.89 6.50 -3.60 -0.02 0.87 16 26 C 0.03 0.30 5.04 -3.70 -0.02 0.28 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.06 1.19 8.14 -51.91 -0.42 0.77 16 29 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 30 H 0.07 1.01 6.18 -51.93 -0.32 0.68 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 35 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.96 7.06 -51.93 -0.37 0.59 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.44 7.67 -51.93 -0.40 0.05 16 39 H 0.11 0.77 7.66 -51.93 -0.40 0.37 16 40 H 0.11 1.30 5.97 -51.93 -0.31 0.99 16 41 H 0.04 0.33 8.02 -51.93 -0.42 -0.08 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 0.28 7.57 -51.93 -0.39 -0.11 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 0.52 6.02 -51.93 -0.31 0.20 16 50 H 0.10 1.06 5.73 -51.93 -0.30 0.76 16 51 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 402.99 15.07 6.07 6.07 Total: -1.00 -32.57 402.99 -12.70 -45.27 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -9.09 Total: -1.85 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -0.30 Total: -8.65 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -2.12 Total: -44.33 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.07 Total: -7.14 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -2.30 Total: -5.67 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.57 -12.70 -45.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080628252.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.958 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds