Wall clock time and date at job start Sat Apr 11 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.46927 * 2 1 4 4 N 1.28602 * 124.61834 * 90.03224 * 3 2 1 5 5 C 1.31380 * 108.71980 * 179.97438 * 4 3 2 6 6 C 1.39667 * 105.89798 * 0.25765 * 5 4 3 7 7 C 1.50710 * 127.04923 * 179.74166 * 6 5 4 8 8 N 1.46897 * 109.47065 * 94.99918 * 7 6 5 9 9 C 1.46897 * 110.99974 * 66.05073 * 8 7 6 10 10 C 1.46904 * 110.99567 * 190.00302 * 8 7 6 11 11 H 1.09002 * 109.46705 * 188.46037 * 10 8 7 12 12 C 1.53003 * 109.47193 * 308.45711 * 10 8 7 13 13 C 1.53000 * 109.47427 * 68.45967 * 10 8 7 14 14 N 1.46501 * 109.46910 * 55.26027 * 13 10 8 15 15 C 1.34780 * 119.99854 * 175.20227 * 14 13 10 16 16 O 1.21276 * 119.99681 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99789 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.46852 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00058 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99591 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00287 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99856 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00128 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47484 * 89.99659 * 23 21 19 25 25 H 1.48500 * 109.47038 * 209.99911 * 23 21 19 26 26 H 1.48506 * 109.47280 * 329.99488 * 23 21 19 27 27 N 1.28601 * 124.62216 * 270.02787 * 3 2 1 28 28 H 1.09003 * 109.46966 * 299.99665 * 1 2 3 29 29 H 1.08994 * 109.47626 * 59.99475 * 1 2 3 30 30 H 1.08999 * 109.47122 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46966 * 240.00335 * 2 1 3 32 32 H 1.08994 * 109.47626 * 120.00525 * 2 1 3 33 33 H 1.07997 * 127.04614 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.46743 * 215.00240 * 7 6 5 35 35 H 1.09001 * 109.46718 * 335.00106 * 7 6 5 36 36 H 1.08994 * 109.47355 * 54.15520 * 9 8 7 37 37 H 1.09000 * 109.46872 * 174.15675 * 9 8 7 38 38 H 1.09002 * 109.47153 * 294.15342 * 9 8 7 39 39 H 1.08999 * 109.46634 * 180.02562 * 12 10 8 40 40 H 1.09000 * 109.46936 * 300.00423 * 12 10 8 41 41 H 1.08997 * 109.46574 * 60.00372 * 12 10 8 42 42 H 1.08992 * 109.47328 * 175.25843 * 13 10 8 43 43 H 1.09000 * 109.46804 * 295.26456 * 13 10 8 44 44 H 0.97007 * 120.00283 * 355.20090 * 14 13 10 45 45 H 1.08995 * 109.47000 * 299.99903 * 17 15 14 46 46 H 1.08993 * 109.47298 * 59.99856 * 17 15 14 47 47 H 0.97005 * 120.00487 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2623 2.0698 1.0583 5 6 2.6838 3.2610 0.6984 6 6 2.6777 3.2632 -0.6982 7 6 3.0713 4.3998 -1.6062 8 7 4.4769 4.2445 -2.0039 9 6 4.6586 3.0504 -2.8400 10 6 4.9655 5.4476 -2.6910 11 1 5.9544 5.2526 -3.1058 12 6 4.0021 5.8163 -3.8210 13 6 5.0496 6.6054 -1.6943 14 7 5.8824 6.2100 -0.5557 15 6 6.1787 7.1066 0.4060 16 8 5.7563 8.2408 0.3285 17 6 7.0359 6.7001 1.5769 18 16 7.2512 8.1137 2.6865 19 6 8.2620 7.3773 3.9277 20 1 8.5531 6.3408 3.8421 21 6 8.6834 8.1290 5.0158 22 7 8.3282 9.3921 5.1202 23 14 9.7545 7.3480 6.3319 24 1 11.1850 7.5219 5.9736 25 1 9.4885 8.0015 7.6386 26 1 9.4413 5.8997 6.4301 27 7 2.2613 2.0703 -1.0583 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.9719 4.0733 1.3492 34 1 2.4393 4.3910 -2.4942 35 1 2.9451 5.3458 -1.0797 36 1 3.9727 3.0914 -3.6861 37 1 5.6849 3.0157 -3.2056 38 1 4.4531 2.1581 -2.2486 39 1 4.3649 6.7087 -4.3309 40 1 3.9422 4.9915 -4.5310 41 1 3.0132 6.0112 -3.4061 42 1 5.4909 7.4740 -2.1829 43 1 4.0487 6.8556 -1.3428 44 1 6.2206 5.3029 -0.4939 45 1 6.5518 5.8858 2.1161 46 1 8.0098 6.3688 1.2166 47 1 8.6229 9.9176 5.8805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725154961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:20 Heat of formation + Delta-G solvation = 78.083050 kcal Electronic energy + Delta-G solvation = -27240.610639 eV Core-core repulsion = 23394.820932 eV Total energy + Delta-G solvation = -3845.789707 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.70575 -39.54379 -38.31184 -35.29702 -34.15223 -32.71191 -32.36957 -31.61257 -30.63185 -29.19658 -27.92717 -26.16740 -25.39839 -24.72803 -24.16672 -22.24465 -21.26640 -20.11468 -19.83457 -17.76310 -17.61212 -16.92983 -16.38464 -16.18071 -16.06521 -15.27711 -15.13323 -14.81361 -14.74563 -14.69845 -14.46207 -13.93895 -13.63692 -13.41540 -13.19406 -12.95064 -12.88468 -12.68310 -12.61467 -12.50710 -12.30677 -12.13316 -11.88665 -11.75510 -11.46659 -11.27927 -11.08791 -11.01494 -10.96132 -10.92224 -10.70502 -10.37304 -9.74882 -9.39918 -9.27256 -9.01160 -8.72299 -8.57825 -8.15474 -6.42446 -6.15890 -3.85359 1.62739 2.07087 2.25507 3.14324 3.24476 3.26729 3.32502 3.38294 3.64424 3.86079 3.95554 4.26573 4.37776 4.39072 4.53218 4.59863 4.64694 4.71925 4.96178 4.97630 5.02145 5.10825 5.16719 5.19218 5.24024 5.29195 5.33764 5.38313 5.43664 5.49921 5.51383 5.67409 5.68802 5.74524 5.82322 5.92721 5.94300 6.01805 6.07527 6.26223 6.53451 6.66190 6.71298 6.86424 7.65704 7.94732 8.19148 8.41417 8.78292 9.29604 10.91528 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.002579 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.892509 B =10854.254492 C =12863.011902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.138 3.862 3 N -0.159 5.159 4 N -0.290 5.290 5 C -0.004 4.004 6 C 0.010 3.990 7 C 0.141 3.859 8 N -0.529 5.529 9 C 0.027 3.973 10 C 0.069 3.931 11 H 0.093 0.907 12 C -0.185 4.185 13 C 0.130 3.870 14 N -0.726 5.726 15 C 0.530 3.470 16 O -0.525 6.525 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.533 4.533 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.917 3.083 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.272 1.272 27 N -0.287 5.287 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.198 0.802 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.029 0.971 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.405 0.595 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.861 -19.018 -18.380 29.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.018 3.982 3 N -0.060 5.060 4 N -0.131 5.131 5 C -0.187 4.187 6 C -0.153 4.153 7 C 0.012 3.988 8 N -0.254 5.254 9 C -0.121 4.121 10 C -0.040 4.040 11 H 0.111 0.889 12 C -0.244 4.244 13 C 0.005 3.995 14 N -0.381 5.381 15 C 0.316 3.684 16 O -0.400 6.400 17 C -0.302 4.302 18 S 0.165 5.835 19 C -0.681 4.681 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.130 5.130 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.215 0.785 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.240 0.760 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.751 -18.366 -17.961 29.623 hybrid contribution 1.167 -1.356 0.299 1.814 sum -13.584 -19.721 -17.662 29.756 Atomic orbital electron populations 1.22176 0.93301 1.03749 1.03634 1.21913 0.95877 0.74799 1.05587 1.48077 1.45347 1.13208 0.99381 1.74104 1.17367 1.05697 1.15904 1.24714 1.03592 0.95629 0.94771 1.22898 1.04377 0.93767 0.94218 1.20341 0.88522 0.93909 0.96077 1.62087 1.18393 1.03016 1.41879 1.22375 1.00931 0.93065 0.95711 1.22044 0.99337 0.89765 0.92811 0.88898 1.22403 1.00470 1.02525 0.98995 1.21295 0.95697 0.95698 0.86769 1.45833 1.54000 1.15006 1.23243 1.20273 0.80234 0.84982 0.82873 1.90690 1.52542 1.19721 1.77025 1.23506 1.01243 1.06827 0.98635 1.85358 1.66945 1.10560 1.20661 1.22875 1.36443 0.99800 1.09027 0.90983 1.24981 0.96217 0.94799 0.97622 1.70019 1.43333 1.06896 1.30130 0.86186 0.80107 0.79218 0.80099 1.20332 1.20808 1.19697 1.73932 1.17813 1.05215 1.15993 0.91382 0.91543 0.89719 0.87668 0.87487 0.78544 0.92680 0.88158 0.95207 0.91529 0.91301 0.91305 0.92078 0.91775 0.90955 0.91915 0.75994 0.89280 0.89437 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 2 C 0.14 0.84 7.26 -4.04 -0.03 0.81 16 3 N -0.16 -1.65 3.95 -10.62 -0.04 -1.69 16 4 N -0.29 -3.55 12.05 30.67 0.37 -3.18 16 5 C 0.00 -0.05 12.16 -17.21 -0.21 -0.26 16 6 C 0.01 0.11 6.08 -82.25 -0.50 -0.39 16 7 C 0.14 1.27 4.42 -4.97 -0.02 1.24 16 8 N -0.53 -4.57 4.07 -236.33 -0.96 -5.53 16 9 C 0.03 0.22 8.93 60.06 0.54 0.76 16 10 C 0.07 0.55 2.47 -67.71 -0.17 0.39 16 11 H 0.09 0.71 7.88 -51.93 -0.41 0.30 16 12 C -0.18 -1.22 8.42 37.16 0.31 -0.91 16 13 C 0.13 1.44 4.93 -4.04 -0.02 1.42 16 14 N -0.73 -9.73 5.41 -60.30 -0.33 -10.05 16 15 C 0.53 9.91 7.85 -10.98 -0.09 9.83 16 16 O -0.52 -11.89 15.86 5.56 0.09 -11.81 16 17 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 19 C -0.53 -15.38 9.50 30.94 0.29 -15.08 16 20 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 23 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 N -0.29 -3.14 11.24 33.72 0.38 -2.76 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.20 2.07 8.06 -52.49 -0.42 1.65 16 34 H 0.06 0.46 6.77 -51.93 -0.35 0.11 16 35 H 0.10 0.91 6.29 -51.93 -0.33 0.59 16 36 H 0.03 0.22 7.07 -51.93 -0.37 -0.14 16 37 H 0.07 0.48 7.90 -51.93 -0.41 0.07 16 38 H 0.07 0.66 6.89 -51.93 -0.36 0.30 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.38 7.00 -51.93 -0.36 0.01 16 41 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.72 6.65 -51.93 -0.35 0.37 16 44 H 0.40 4.77 8.07 -40.82 -0.33 4.45 16 45 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 46 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 399.68 15.07 6.02 6.02 Total: -1.00 -36.32 399.68 -7.73 -44.06 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.37 Total: 1.43 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 0.61 Total: -3.54 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.15 Total: -48.92 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.32 -7.73 -44.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725154961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.139 kcal (2) G-P(sol) polarization free energy of solvation -36.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds