Wall clock time and date at job start Sat Apr 11 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.46927 * 2 1 4 4 N 1.28602 * 124.61834 * 90.03224 * 3 2 1 5 5 C 1.31380 * 108.71980 * 179.97438 * 4 3 2 6 6 C 1.39667 * 105.89798 * 0.25765 * 5 4 3 7 7 C 1.50710 * 127.04923 * 179.74166 * 6 5 4 8 8 N 1.46897 * 109.47065 * 94.99918 * 7 6 5 9 9 C 1.46897 * 110.99974 * 66.05073 * 8 7 6 10 10 C 1.46904 * 110.99567 * 190.00302 * 8 7 6 11 11 H 1.09002 * 109.46705 * 188.46037 * 10 8 7 12 12 C 1.53003 * 109.47193 * 308.45711 * 10 8 7 13 13 C 1.53000 * 109.47427 * 68.45967 * 10 8 7 14 14 N 1.46501 * 109.46910 * 55.26027 * 13 10 8 15 15 C 1.34780 * 119.99854 * 175.20227 * 14 13 10 16 16 O 1.21276 * 119.99681 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99789 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.46852 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00058 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99591 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00287 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99856 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00128 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47484 * 89.99659 * 23 21 19 25 25 H 1.48500 * 109.47038 * 209.99911 * 23 21 19 26 26 H 1.48506 * 109.47280 * 329.99488 * 23 21 19 27 27 N 1.28601 * 124.62216 * 270.02787 * 3 2 1 28 28 H 1.09003 * 109.46966 * 299.99665 * 1 2 3 29 29 H 1.08994 * 109.47626 * 59.99475 * 1 2 3 30 30 H 1.08999 * 109.47122 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46966 * 240.00335 * 2 1 3 32 32 H 1.08994 * 109.47626 * 120.00525 * 2 1 3 33 33 H 1.07997 * 127.04614 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.46743 * 215.00240 * 7 6 5 35 35 H 1.09001 * 109.46718 * 335.00106 * 7 6 5 36 36 H 1.08994 * 109.47355 * 54.15520 * 9 8 7 37 37 H 1.09000 * 109.46872 * 174.15675 * 9 8 7 38 38 H 1.09002 * 109.47153 * 294.15342 * 9 8 7 39 39 H 1.08999 * 109.46634 * 180.02562 * 12 10 8 40 40 H 1.09000 * 109.46936 * 300.00423 * 12 10 8 41 41 H 1.08997 * 109.46574 * 60.00372 * 12 10 8 42 42 H 1.08992 * 109.47328 * 175.25843 * 13 10 8 43 43 H 1.09000 * 109.46804 * 295.26456 * 13 10 8 44 44 H 0.97007 * 120.00283 * 355.20090 * 14 13 10 45 45 H 1.08995 * 109.47000 * 299.99903 * 17 15 14 46 46 H 1.08993 * 109.47298 * 59.99856 * 17 15 14 47 47 H 0.97005 * 120.00487 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2623 2.0698 1.0583 5 6 2.6838 3.2610 0.6984 6 6 2.6777 3.2632 -0.6982 7 6 3.0713 4.3998 -1.6062 8 7 4.4769 4.2445 -2.0039 9 6 4.6586 3.0504 -2.8400 10 6 4.9655 5.4476 -2.6910 11 1 5.9544 5.2526 -3.1058 12 6 4.0021 5.8163 -3.8210 13 6 5.0496 6.6054 -1.6943 14 7 5.8824 6.2100 -0.5557 15 6 6.1787 7.1066 0.4060 16 8 5.7563 8.2408 0.3285 17 6 7.0359 6.7001 1.5769 18 16 7.2512 8.1137 2.6865 19 6 8.2620 7.3773 3.9277 20 1 8.5531 6.3408 3.8421 21 6 8.6834 8.1290 5.0158 22 7 8.3282 9.3921 5.1202 23 14 9.7545 7.3480 6.3319 24 1 11.1850 7.5219 5.9736 25 1 9.4885 8.0015 7.6386 26 1 9.4413 5.8997 6.4301 27 7 2.2613 2.0703 -1.0583 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.9719 4.0733 1.3492 34 1 2.4393 4.3910 -2.4942 35 1 2.9451 5.3458 -1.0797 36 1 3.9727 3.0914 -3.6861 37 1 5.6849 3.0157 -3.2056 38 1 4.4531 2.1581 -2.2486 39 1 4.3649 6.7087 -4.3309 40 1 3.9422 4.9915 -4.5310 41 1 3.0132 6.0112 -3.4061 42 1 5.4909 7.4740 -2.1829 43 1 4.0487 6.8556 -1.3428 44 1 6.2206 5.3029 -0.4939 45 1 6.5518 5.8858 2.1161 46 1 8.0098 6.3688 1.2166 47 1 8.6229 9.9176 5.8805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725154961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:19 Heat of formation + Delta-G solvation = 50.869447 kcal Electronic energy + Delta-G solvation = -27241.790710 eV Core-core repulsion = 23394.820932 eV Total energy + Delta-G solvation = -3846.969777 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.50918 -40.69444 -39.37415 -35.98878 -35.24862 -34.55490 -33.58347 -32.44140 -31.43629 -30.52664 -28.60150 -27.70272 -26.90733 -25.45286 -24.90510 -22.99805 -22.00716 -21.54690 -20.62316 -19.72589 -18.33018 -17.77514 -17.61114 -17.28740 -17.10446 -16.85314 -16.29588 -15.96415 -15.83535 -15.73609 -15.49764 -15.05893 -14.65688 -14.46856 -14.32002 -14.04079 -13.86419 -13.63496 -13.38966 -13.15313 -13.12851 -13.05592 -13.03028 -12.86378 -12.79229 -12.57827 -12.33312 -12.18690 -12.06333 -11.82261 -11.76360 -11.67906 -11.21940 -11.11732 -10.85291 -10.22897 -10.17072 -9.93151 -9.28197 -8.61778 -8.31836 -6.08718 0.81897 1.30683 1.39444 1.43600 1.46197 1.49835 1.61247 1.74064 2.29551 2.43112 2.96828 3.01996 3.21325 3.38385 3.71472 3.84648 3.93990 3.94791 4.02645 4.15679 4.23509 4.25481 4.34821 4.37237 4.43094 4.48061 4.58517 4.65344 4.67711 4.70296 4.73293 4.77811 4.87657 4.92618 5.01989 5.05718 5.11387 5.15245 5.28017 5.30656 5.44687 5.58266 5.81407 6.01229 6.08781 6.22784 6.68077 7.09562 7.36768 7.38848 8.77311 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.002579 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.892509 B =10854.254492 C =12863.011902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.125 3.875 3 N -0.157 5.157 4 N -0.311 5.311 5 C -0.024 4.024 6 C 0.006 3.994 7 C 0.145 3.855 8 N -0.537 5.537 9 C 0.033 3.967 10 C 0.081 3.919 11 H 0.105 0.895 12 C -0.180 4.180 13 C 0.128 3.872 14 N -0.699 5.699 15 C 0.533 3.467 16 O -0.570 6.570 17 C -0.128 4.128 18 S -0.148 6.148 19 C -0.545 4.545 20 H 0.080 0.920 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.260 1.260 27 N -0.291 5.291 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.200 0.800 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.417 0.583 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.478 -21.616 -19.548 32.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.007 3.993 3 N -0.059 5.059 4 N -0.153 5.153 5 C -0.206 4.206 6 C -0.156 4.156 7 C 0.016 3.984 8 N -0.262 5.262 9 C -0.115 4.115 10 C -0.027 4.027 11 H 0.123 0.877 12 C -0.239 4.239 13 C 0.004 3.996 14 N -0.352 5.352 15 C 0.319 3.681 16 O -0.449 6.449 17 C -0.280 4.280 18 S 0.079 5.921 19 C -0.693 4.693 20 H 0.098 0.902 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.184 1.184 27 N -0.135 5.135 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.216 0.784 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.254 0.746 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.376 -21.016 -19.173 31.874 hybrid contribution 0.963 -0.657 0.549 1.289 sum -13.412 -21.673 -18.624 31.567 Atomic orbital electron populations 1.22133 0.92426 1.05205 1.02286 1.22358 0.96602 0.73186 1.07151 1.48558 1.44461 1.14109 0.98785 1.74056 1.18052 1.06220 1.16955 1.24877 1.04327 0.95853 0.95514 1.23121 1.04255 0.94187 0.94049 1.20318 0.88985 0.93054 0.96048 1.62040 1.18150 1.03486 1.42483 1.22316 1.01824 0.91912 0.95416 1.21941 1.00439 0.88274 0.92077 0.87717 1.22358 0.99901 1.03194 0.98461 1.21494 0.94823 0.97079 0.86242 1.45603 1.52791 1.14497 1.22337 1.19956 0.79950 0.84923 0.83270 1.90681 1.54486 1.21692 1.78053 1.23352 1.02928 1.03680 0.98000 1.85507 1.67451 1.15962 1.23211 1.23198 1.36504 1.00181 1.09418 0.90166 1.26103 0.97593 0.95267 1.00195 1.70180 1.44789 1.08645 1.31125 0.84977 0.78020 0.78604 0.76524 1.19286 1.20273 1.18350 1.73911 1.17964 1.05370 1.16259 0.92966 0.92515 0.86852 0.85739 0.86324 0.78357 0.91778 0.88534 0.94469 0.90354 0.92878 0.90739 0.91022 0.91857 0.91394 0.92183 0.74621 0.87707 0.87685 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 10.24 71.98 0.74 -0.67 16 2 C 0.12 1.34 7.26 86.38 0.63 1.97 16 3 N -0.16 -3.13 3.95 -187.52 -0.74 -3.87 16 4 N -0.31 -7.55 12.05 -56.87 -0.69 -8.23 16 5 C -0.02 -0.55 12.16 85.11 1.03 0.48 16 6 C 0.01 0.13 6.08 42.98 0.26 0.39 16 7 C 0.15 2.41 4.42 85.56 0.38 2.79 16 8 N -0.54 -8.13 4.07 -901.60 -3.67 -11.80 16 9 C 0.03 0.45 8.93 127.69 1.14 1.59 16 10 C 0.08 1.10 2.47 44.92 0.11 1.21 16 11 H 0.10 1.25 7.88 -2.39 -0.02 1.24 16 12 C -0.18 -1.91 8.42 71.98 0.61 -1.30 16 13 C 0.13 2.63 4.93 86.38 0.43 3.06 16 14 N -0.70 -17.71 5.41 -463.06 -2.51 -20.22 16 15 C 0.53 19.74 7.85 87.66 0.69 20.43 16 16 O -0.57 -26.30 15.86 -3.02 -0.05 -26.35 16 17 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 18 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 19 C -0.55 -31.62 9.50 67.95 0.65 -30.98 16 20 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 21 C 0.01 0.76 5.49 84.86 0.47 1.22 16 22 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 23 Si 1.00 44.30 29.55 68.60 2.03 46.33 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 27 N -0.29 -6.09 11.24 -47.24 -0.53 -6.62 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.20 4.29 8.06 -2.91 -0.02 4.26 16 34 H 0.06 0.95 6.77 -2.39 -0.02 0.94 16 35 H 0.10 1.67 6.29 -2.39 -0.02 1.65 16 36 H 0.04 0.46 7.07 -2.39 -0.02 0.44 16 37 H 0.08 0.89 7.90 -2.39 -0.02 0.87 16 38 H 0.05 0.92 6.89 -2.39 -0.02 0.90 16 39 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.66 7.00 -2.39 -0.02 0.64 16 41 H 0.06 0.70 6.54 -2.39 -0.02 0.69 16 42 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.32 6.65 -2.39 -0.02 1.30 16 44 H 0.42 8.87 8.07 -92.70 -0.75 8.12 16 45 H 0.10 3.91 8.14 -2.40 -0.02 3.90 16 46 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 47 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 Total: -1.00 -80.54 399.68 0.75 -79.79 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.23 Total: 21.31 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 7.56 Total: -4.58 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -7.85 Total: -106.99 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -80.54 0.75 -79.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725154961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.660 kcal (2) G-P(sol) polarization free energy of solvation -80.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds