Wall clock time and date at job start Sat Apr 11 2020 06:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00251 * 2 1 4 4 H 1.48506 * 109.47042 * 239.99570 * 3 2 1 5 5 H 1.48504 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47505 * 119.99757 * 3 2 1 7 7 C 1.38803 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99685 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00226 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00141 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47132 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00265 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00278 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00357 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47213 * 180.02562 * 14 13 11 16 16 N 1.46896 * 109.47379 * 179.97438 * 15 14 13 17 17 C 1.46850 * 111.00472 * 170.00090 * 16 15 14 18 18 C 1.53036 * 109.52384 * 185.84130 * 17 16 15 19 19 C 1.53114 * 109.27799 * 300.81924 * 18 17 16 20 20 N 1.46899 * 109.52396 * 177.62371 * 19 18 17 21 21 C 1.46895 * 111.00128 * 154.99677 * 20 19 18 22 22 C 1.53007 * 109.47311 * 180.02562 * 21 20 19 23 23 C 1.52997 * 117.49828 * 243.62707 * 22 21 20 24 24 C 1.52997 * 117.49863 * 175.00012 * 22 21 20 25 25 C 1.53120 * 109.16161 * 57.65854 * 19 18 17 26 26 C 1.46846 * 110.99998 * 294.21502 * 16 15 14 27 27 H 0.97005 * 120.00081 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46780 * 59.99771 * 10 9 7 29 29 H 1.09004 * 109.46970 * 299.99767 * 10 9 7 30 30 H 0.97001 * 119.99479 * 0.02562 * 13 11 10 31 31 H 1.08998 * 109.46735 * 59.99957 * 14 13 11 32 32 H 1.08993 * 109.46697 * 300.00380 * 14 13 11 33 33 H 1.09002 * 109.47096 * 59.99852 * 15 14 13 34 34 H 1.09004 * 109.47110 * 300.00038 * 15 14 13 35 35 H 1.08995 * 109.45831 * 65.81919 * 17 16 15 36 36 H 1.08998 * 109.45719 * 305.85769 * 17 16 15 37 37 H 1.09004 * 109.50109 * 60.76189 * 18 17 16 38 38 H 1.08997 * 109.49831 * 180.87683 * 18 17 16 39 39 H 1.09002 * 109.52325 * 297.75085 * 19 18 17 40 40 H 1.00902 * 111.00133 * 31.04868 * 20 19 18 41 41 H 1.08998 * 109.47513 * 300.00541 * 21 20 19 42 42 H 1.08999 * 109.47210 * 60.00305 * 21 20 19 43 43 H 1.08996 * 115.54494 * 29.33531 * 22 21 20 44 44 H 1.08997 * 117.50052 * 359.97438 * 23 22 21 45 45 H 1.09001 * 117.49613 * 145.02255 * 23 22 21 46 46 H 1.09004 * 117.49810 * 214.97824 * 24 22 21 47 47 H 1.09001 * 117.50259 * 0.02562 * 24 22 21 48 48 H 1.08998 * 109.50493 * 62.28140 * 25 19 18 49 49 H 1.09005 * 109.50270 * 182.40711 * 25 19 18 50 50 H 1.08993 * 109.46639 * 54.13954 * 26 16 15 51 51 H 1.09006 * 109.45299 * 294.16835 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0008 14 6 2.3301 -7.7152 0.0008 15 6 3.5020 -8.6986 0.0009 16 7 2.9869 -10.0743 0.0016 17 6 4.0666 -11.0408 -0.2363 18 6 3.4747 -12.4453 -0.3738 19 6 2.7179 -12.8027 0.9084 20 7 2.0996 -14.1270 0.7606 21 6 1.8904 -14.7594 2.0699 22 6 1.2468 -16.1338 1.8754 23 6 -0.1548 -16.3454 2.4513 24 6 1.0539 -17.0057 3.1178 25 6 1.6307 -11.7540 1.1592 26 6 2.2761 -10.3695 1.2522 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7314 0.8905 29 1 3.1243 -3.7314 -0.8895 30 1 3.8006 -6.1836 0.0004 31 1 1.7212 -7.8751 -0.8890 32 1 1.7218 -7.8752 0.8909 33 1 4.1106 -8.5385 0.8909 34 1 4.1107 -8.5386 -0.8890 35 1 4.7632 -11.0206 0.6018 36 1 4.5940 -10.7776 -1.1531 37 1 2.7884 -12.4697 -1.2203 38 1 4.2778 -13.1644 -0.5348 39 1 3.4117 -12.8164 1.7491 40 1 2.6514 -14.7184 0.1575 41 1 2.8495 -14.8758 2.5746 42 1 1.2350 -14.1333 2.6753 43 1 1.4881 -16.6377 0.9395 44 1 -0.6182 -15.5056 2.9690 45 1 -0.8360 -16.9885 1.8941 46 1 1.1677 -18.0832 2.9991 47 1 1.3850 -16.6000 4.0738 48 1 0.9154 -11.7676 0.3368 49 1 1.1164 -11.9793 2.0935 50 1 1.5031 -9.6188 1.4165 51 1 2.9812 -10.3525 2.0833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733579338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:39 Heat of formation + Delta-G solvation = -15.276903 kcal Electronic energy + Delta-G solvation = -26188.127753 eV Core-core repulsion = 22441.829998 eV Total energy + Delta-G solvation = -3746.297755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.87412 -39.04017 -38.13433 -36.17948 -34.45096 -32.41726 -32.04074 -31.26366 -29.83889 -27.78224 -25.94230 -25.42954 -24.02256 -22.93406 -22.75445 -21.64396 -21.06900 -20.39199 -19.96273 -17.82550 -16.76449 -16.37595 -16.24736 -15.99434 -15.84567 -15.51243 -15.07394 -14.95200 -14.79201 -14.64374 -14.47677 -13.96568 -13.90312 -13.54296 -13.42245 -13.14970 -13.02235 -12.57251 -12.46864 -12.24482 -11.97868 -11.83186 -11.75554 -11.64780 -11.49568 -11.34553 -11.03626 -11.03220 -11.02152 -10.76543 -10.71043 -10.59766 -10.48108 -9.81240 -9.39403 -9.05062 -8.86305 -8.83308 -8.67952 -8.22175 -6.48418 -6.20114 -3.90704 2.96071 3.12994 3.24353 3.25247 3.26566 3.29835 3.50636 3.66412 3.93804 4.21859 4.22800 4.37010 4.45341 4.49443 4.56890 4.65054 4.76332 4.84849 4.89191 4.93211 5.03319 5.09335 5.14374 5.14896 5.17431 5.18739 5.20474 5.23051 5.25329 5.35708 5.45084 5.47369 5.56251 5.63366 5.67086 5.69052 5.76876 5.79868 5.82206 5.91973 5.96047 6.06215 6.15253 6.56955 6.62798 6.72711 6.76427 6.93491 7.60425 7.72258 8.36260 8.64093 9.24940 10.87278 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.030082 B = 0.001398 C = 0.001355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.577710 B =20021.659548 C =20662.070829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.740 5.740 14 C 0.124 3.876 15 C 0.047 3.953 16 N -0.532 5.532 17 C 0.061 3.939 18 C -0.117 4.117 19 C 0.087 3.913 20 N -0.682 5.682 21 C 0.090 3.910 22 C -0.150 4.150 23 C -0.173 4.173 24 C -0.183 4.183 25 C -0.103 4.103 26 C 0.049 3.951 27 H 0.269 0.731 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.397 0.603 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.032 0.968 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.039 0.961 40 H 0.340 0.660 41 H 0.031 0.969 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.082 0.918 49 H 0.064 0.936 50 H 0.085 0.915 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.151 -33.095 3.259 34.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.395 5.395 14 C -0.001 4.001 15 C -0.082 4.082 16 N -0.257 5.257 17 C -0.068 4.068 18 C -0.156 4.156 19 C -0.023 4.023 20 N -0.313 5.313 21 C -0.039 4.039 22 C -0.168 4.168 23 C -0.210 4.210 24 C -0.221 4.221 25 C -0.141 4.141 26 C -0.079 4.079 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.230 0.770 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.159 0.841 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.123 0.877 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.111 0.889 48 H 0.100 0.900 49 H 0.082 0.918 50 H 0.103 0.897 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.988 -33.128 2.844 33.977 hybrid contribution 3.971 1.111 0.949 4.232 sum 10.959 -32.017 3.793 34.053 Atomic orbital electron populations 1.70006 1.05956 1.27558 1.46753 1.24982 0.95013 0.98989 0.94525 0.86231 0.79243 0.81275 0.78781 1.19942 1.20800 1.19962 1.22833 0.94877 0.91713 1.59093 0.90995 1.85407 1.04910 0.96255 1.96718 1.23529 1.06571 0.95390 1.04898 1.20285 0.86510 0.86209 0.75198 1.90710 1.15350 1.85577 1.47355 1.45924 1.09908 1.05536 1.78131 1.21203 0.95725 0.80082 1.03044 1.22224 0.96438 0.88022 1.01490 1.61780 1.26934 1.01567 1.35464 1.22023 0.92123 0.91792 1.00842 1.21759 0.99688 0.95621 0.98496 1.21586 0.94568 0.89260 0.96845 1.60441 1.53880 1.03880 1.13074 1.21565 0.98586 0.92873 0.90913 1.22231 1.00018 0.96714 0.97837 1.23001 0.90996 1.03261 1.03719 1.22985 1.03384 0.98894 0.96834 1.21571 0.97891 0.92008 1.02666 1.22236 0.98060 0.98015 0.89565 0.92126 0.89276 0.89197 0.76994 0.90642 0.91671 0.94242 0.90002 0.94977 0.90272 0.89787 0.91691 0.94311 0.84111 0.95081 0.90775 0.87655 0.88681 0.88845 0.88799 0.88884 0.89966 0.91763 0.89668 0.95011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 11 C 0.53 10.06 7.85 -10.99 -0.09 9.97 16 12 O -0.52 -11.96 15.86 5.55 0.09 -11.87 16 13 N -0.74 -9.92 5.56 -60.30 -0.34 -10.25 16 14 C 0.12 1.49 5.60 -4.04 -0.02 1.47 16 15 C 0.05 0.41 5.07 -3.83 -0.02 0.39 16 16 N -0.53 -4.61 4.66 -234.68 -1.09 -5.70 16 17 C 0.06 0.42 5.46 -3.83 -0.02 0.40 16 18 C -0.12 -0.73 5.36 -26.65 -0.14 -0.88 16 19 C 0.09 0.59 2.56 -67.59 -0.17 0.42 16 20 N -0.68 -4.42 6.31 -106.60 -0.67 -5.09 16 21 C 0.09 0.55 5.77 -3.82 -0.02 0.53 16 22 C -0.15 -0.85 5.95 -90.62 -0.54 -1.39 16 23 C -0.17 -0.99 10.18 -26.73 -0.27 -1.26 16 24 C -0.18 -0.93 10.25 -26.73 -0.27 -1.21 16 25 C -0.10 -0.83 5.59 -26.65 -0.15 -0.98 16 26 C 0.05 0.42 5.29 -3.83 -0.02 0.40 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 29 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 30 H 0.40 4.03 8.47 -40.82 -0.35 3.69 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.85 6.43 -51.93 -0.33 0.52 16 33 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 34 H 0.08 0.64 7.99 -51.93 -0.41 0.23 16 35 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.08 0.50 8.02 -51.93 -0.42 0.08 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.04 0.28 7.80 -51.93 -0.41 -0.13 16 40 H 0.34 1.83 8.35 -39.29 -0.33 1.50 16 41 H 0.03 0.19 8.06 -51.93 -0.42 -0.23 16 42 H 0.07 0.51 7.25 -51.93 -0.38 0.13 16 43 H 0.11 0.58 8.13 -51.93 -0.42 0.16 16 44 H 0.09 0.56 8.03 -51.93 -0.42 0.14 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.06 0.50 7.55 -51.93 -0.39 0.11 16 50 H 0.09 0.82 6.21 -51.93 -0.32 0.49 16 51 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 419.21 15.07 6.32 6.32 Total: -1.00 -34.01 419.21 -12.73 -46.74 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -9.21 Total: 0.89 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -1.32 Total: -8.07 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -1.37 Total: -46.58 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.01 -12.73 -46.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733579338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.461 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds