Wall clock time and date at job start Sat Apr 11 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00251 * 2 1 4 4 H 1.48506 * 109.47042 * 239.99570 * 3 2 1 5 5 H 1.48504 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47505 * 119.99757 * 3 2 1 7 7 C 1.38803 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99685 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00226 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00141 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47132 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00265 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00278 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00357 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47213 * 180.02562 * 14 13 11 16 16 N 1.46896 * 109.47379 * 179.97438 * 15 14 13 17 17 C 1.46850 * 111.00472 * 170.00090 * 16 15 14 18 18 C 1.53036 * 109.52384 * 185.84130 * 17 16 15 19 19 C 1.53114 * 109.27799 * 300.81924 * 18 17 16 20 20 N 1.46899 * 109.52396 * 177.62371 * 19 18 17 21 21 C 1.46895 * 111.00128 * 154.99677 * 20 19 18 22 22 C 1.53007 * 109.47311 * 180.02562 * 21 20 19 23 23 C 1.52997 * 117.49828 * 243.62707 * 22 21 20 24 24 C 1.52997 * 117.49863 * 175.00012 * 22 21 20 25 25 C 1.53120 * 109.16161 * 57.65854 * 19 18 17 26 26 C 1.46846 * 110.99998 * 294.21502 * 16 15 14 27 27 H 0.97005 * 120.00081 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46780 * 59.99771 * 10 9 7 29 29 H 1.09004 * 109.46970 * 299.99767 * 10 9 7 30 30 H 0.97001 * 119.99479 * 0.02562 * 13 11 10 31 31 H 1.08998 * 109.46735 * 59.99957 * 14 13 11 32 32 H 1.08993 * 109.46697 * 300.00380 * 14 13 11 33 33 H 1.09002 * 109.47096 * 59.99852 * 15 14 13 34 34 H 1.09004 * 109.47110 * 300.00038 * 15 14 13 35 35 H 1.08995 * 109.45831 * 65.81919 * 17 16 15 36 36 H 1.08998 * 109.45719 * 305.85769 * 17 16 15 37 37 H 1.09004 * 109.50109 * 60.76189 * 18 17 16 38 38 H 1.08997 * 109.49831 * 180.87683 * 18 17 16 39 39 H 1.09002 * 109.52325 * 297.75085 * 19 18 17 40 40 H 1.00902 * 111.00133 * 31.04868 * 20 19 18 41 41 H 1.08998 * 109.47513 * 300.00541 * 21 20 19 42 42 H 1.08999 * 109.47210 * 60.00305 * 21 20 19 43 43 H 1.08996 * 115.54494 * 29.33531 * 22 21 20 44 44 H 1.08997 * 117.50052 * 359.97438 * 23 22 21 45 45 H 1.09001 * 117.49613 * 145.02255 * 23 22 21 46 46 H 1.09004 * 117.49810 * 214.97824 * 24 22 21 47 47 H 1.09001 * 117.50259 * 0.02562 * 24 22 21 48 48 H 1.08998 * 109.50493 * 62.28140 * 25 19 18 49 49 H 1.09005 * 109.50270 * 182.40711 * 25 19 18 50 50 H 1.08993 * 109.46639 * 54.13954 * 26 16 15 51 51 H 1.09006 * 109.45299 * 294.16835 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0008 14 6 2.3301 -7.7152 0.0008 15 6 3.5020 -8.6986 0.0009 16 7 2.9869 -10.0743 0.0016 17 6 4.0666 -11.0408 -0.2363 18 6 3.4747 -12.4453 -0.3738 19 6 2.7179 -12.8027 0.9084 20 7 2.0996 -14.1270 0.7606 21 6 1.8904 -14.7594 2.0699 22 6 1.2468 -16.1338 1.8754 23 6 -0.1548 -16.3454 2.4513 24 6 1.0539 -17.0057 3.1178 25 6 1.6307 -11.7540 1.1592 26 6 2.2761 -10.3695 1.2522 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7314 0.8905 29 1 3.1243 -3.7314 -0.8895 30 1 3.8006 -6.1836 0.0004 31 1 1.7212 -7.8751 -0.8890 32 1 1.7218 -7.8752 0.8909 33 1 4.1106 -8.5385 0.8909 34 1 4.1107 -8.5386 -0.8890 35 1 4.7632 -11.0206 0.6018 36 1 4.5940 -10.7776 -1.1531 37 1 2.7884 -12.4697 -1.2203 38 1 4.2778 -13.1644 -0.5348 39 1 3.4117 -12.8164 1.7491 40 1 2.6514 -14.7184 0.1575 41 1 2.8495 -14.8758 2.5746 42 1 1.2350 -14.1333 2.6753 43 1 1.4881 -16.6377 0.9395 44 1 -0.6182 -15.5056 2.9690 45 1 -0.8360 -16.9885 1.8941 46 1 1.1677 -18.0832 2.9991 47 1 1.3850 -16.6000 4.0738 48 1 0.9154 -11.7676 0.3368 49 1 1.1164 -11.9793 2.0935 50 1 1.5031 -9.6188 1.4165 51 1 2.9812 -10.3525 2.0833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733579338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:38 Heat of formation + Delta-G solvation = -39.866113 kcal Electronic energy + Delta-G solvation = -26189.194021 eV Core-core repulsion = 22441.829998 eV Total energy + Delta-G solvation = -3747.364023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.77405 -40.20391 -38.65292 -36.91548 -35.53099 -34.57630 -32.84576 -31.87550 -31.16950 -28.78785 -27.63834 -26.53641 -24.71160 -23.55717 -23.20255 -22.39560 -21.80593 -21.56254 -20.56253 -19.82372 -17.90578 -17.45460 -16.94522 -16.86973 -16.81624 -16.79182 -16.40249 -16.05314 -15.72531 -15.54349 -15.37874 -15.02323 -14.85459 -14.65393 -14.41949 -14.18622 -13.95549 -13.69101 -13.55358 -13.16222 -13.10610 -12.86444 -12.77379 -12.62248 -12.43734 -12.37429 -12.26801 -12.12351 -12.05494 -11.74209 -11.58433 -11.32045 -11.11972 -11.09239 -10.97825 -10.93649 -10.26945 -10.11897 -9.36193 -9.31870 -8.66242 -8.33495 -6.12001 1.27039 1.44849 1.47292 1.56941 1.61119 2.17517 2.28781 2.80916 2.99915 3.00656 3.18731 3.34689 3.69290 3.82028 3.85754 3.95179 4.01709 4.03056 4.06521 4.13308 4.26126 4.30163 4.31753 4.40834 4.43108 4.47782 4.51671 4.55055 4.60849 4.65984 4.69947 4.78706 4.80488 4.85868 4.92218 4.96441 4.99124 5.04295 5.08251 5.23529 5.25565 5.33530 5.39157 5.40982 5.42493 6.03863 6.10814 6.11494 6.20492 6.49380 6.50527 7.07558 7.24665 8.75559 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.030082 B = 0.001398 C = 0.001355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.577710 B =20021.659548 C =20662.070829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.128 4.128 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.711 5.711 14 C 0.126 3.874 15 C 0.058 3.942 16 N -0.546 5.546 17 C 0.061 3.939 18 C -0.112 4.112 19 C 0.092 3.908 20 N -0.689 5.689 21 C 0.093 3.907 22 C -0.153 4.153 23 C -0.183 4.183 24 C -0.177 4.177 25 C -0.099 4.099 26 C 0.052 3.948 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.417 0.583 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.040 0.960 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.041 0.959 40 H 0.348 0.652 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.068 0.932 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.500 -33.886 3.250 36.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.366 5.366 14 C 0.002 3.998 15 C -0.070 4.070 16 N -0.271 5.271 17 C -0.067 4.067 18 C -0.150 4.150 19 C -0.018 4.018 20 N -0.321 5.321 21 C -0.036 4.036 22 C -0.171 4.171 23 C -0.220 4.220 24 C -0.214 4.214 25 C -0.138 4.138 26 C -0.076 4.076 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.255 0.745 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.058 0.942 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.168 0.832 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.127 0.873 44 H 0.108 0.892 45 H 0.114 0.886 46 H 0.121 0.879 47 H 0.114 0.886 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.087 0.913 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.404 -33.967 2.832 35.637 hybrid contribution 2.940 1.207 0.953 3.318 sum 13.344 -32.760 3.785 35.576 Atomic orbital electron populations 1.70180 1.08028 1.28673 1.47935 1.26128 0.95937 1.03321 0.93682 0.85004 0.77801 0.75665 0.79519 1.18612 1.20438 1.18623 1.23184 0.95388 0.91971 1.59021 0.89804 1.85616 1.10671 0.99309 1.97070 1.23365 1.03523 0.94115 1.06958 1.20091 0.86195 0.86735 0.75100 1.90700 1.17566 1.86131 1.50133 1.45614 1.10398 1.04973 1.75603 1.21248 0.97113 0.79782 1.01646 1.22109 0.94809 0.87160 1.02948 1.61751 1.28009 1.01913 1.35428 1.22092 0.91618 0.91381 1.01616 1.21718 0.99887 0.95906 0.97478 1.21501 0.93978 0.88963 0.97309 1.60392 1.54226 1.03991 1.13454 1.21508 0.98556 0.92858 0.90643 1.22244 0.99858 0.96671 0.98335 1.23043 0.91304 1.03454 1.04223 1.23042 1.02399 0.99324 0.96640 1.21503 0.98005 0.92501 1.01749 1.22161 0.97807 0.97682 0.89956 0.92002 0.87050 0.86989 0.74540 0.92456 0.92857 0.92862 0.88313 0.94188 0.89209 0.91063 0.89708 0.94098 0.83214 0.94649 0.91843 0.87334 0.89236 0.88578 0.87897 0.88619 0.91899 0.92002 0.91344 0.94380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 7 C -0.55 -31.34 9.50 67.96 0.65 -30.69 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 10 C -0.13 -5.06 6.16 71.23 0.44 -4.63 16 11 C 0.53 19.88 7.85 87.66 0.69 20.57 16 12 O -0.57 -27.00 15.86 -3.04 -0.05 -27.05 16 13 N -0.71 -17.79 5.56 -463.08 -2.57 -20.36 16 14 C 0.13 2.93 5.60 86.38 0.48 3.42 16 15 C 0.06 0.87 5.07 86.30 0.44 1.31 16 16 N -0.55 -8.61 4.66 -896.38 -4.17 -12.78 16 17 C 0.06 0.69 5.46 86.32 0.47 1.16 16 18 C -0.11 -1.18 5.36 30.64 0.16 -1.01 16 19 C 0.09 1.14 2.56 44.99 0.12 1.26 16 20 N -0.69 -8.27 6.31 -491.17 -3.10 -11.37 16 21 C 0.09 1.07 5.77 86.31 0.50 1.57 16 22 C -0.15 -1.61 5.95 -10.79 -0.06 -1.67 16 23 C -0.18 -2.04 10.18 30.60 0.31 -1.73 16 24 C -0.18 -1.61 10.25 30.60 0.31 -1.30 16 25 C -0.10 -1.59 5.59 30.65 0.17 -1.42 16 26 C 0.05 0.87 5.29 86.33 0.46 1.33 16 27 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 28 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 29 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 30 H 0.42 7.12 8.47 -92.71 -0.79 6.33 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.40 6.43 -2.39 -0.02 1.39 16 33 H 0.05 0.69 8.12 -2.39 -0.02 0.67 16 34 H 0.10 1.20 7.99 -2.39 -0.02 1.18 16 35 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.09 0.85 8.02 -2.39 -0.02 0.83 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.04 0.51 7.80 -2.39 -0.02 0.49 16 40 H 0.35 3.24 8.35 -89.69 -0.75 2.49 16 41 H 0.04 0.38 8.06 -2.39 -0.02 0.36 16 42 H 0.06 0.86 7.25 -2.39 -0.02 0.84 16 43 H 0.11 1.07 8.13 -2.39 -0.02 1.05 16 44 H 0.09 1.08 8.03 -2.39 -0.02 1.06 16 45 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.10 0.75 8.14 -2.38 -0.02 0.74 16 47 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.06 0.99 7.55 -2.38 -0.02 0.98 16 50 H 0.07 1.35 6.21 -2.39 -0.01 1.34 16 51 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -76.24 419.21 -3.77 -80.00 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.62 Total: 22.42 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.60 Total: -10.58 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -9.56 Total: -100.56 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.05 Total: -27.05 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -76.24 -3.77 -80.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733579338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.139 kcal (2) G-P(sol) polarization free energy of solvation -76.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds