Wall clock time and date at job start Sat Apr 11 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47529 * 2 1 4 4 C 1.35629 * 125.67266 * 264.69603 * 3 2 1 5 5 C 1.35520 * 108.85322 * 179.97438 * 4 3 2 6 6 Cl 1.73595 * 126.07721 * 179.97438 * 5 4 3 7 7 C 1.39895 * 107.84688 * 359.77318 * 5 4 3 8 8 C 1.37638 * 125.67930 * 84.68803 * 3 2 1 9 9 C 1.46673 * 126.22212 * 359.96926 * 8 3 2 10 10 O 1.21699 * 119.99895 * 5.47701 * 9 8 3 11 11 N 1.34771 * 119.99886 * 185.48311 * 9 8 3 12 12 C 1.46504 * 120.00027 * 174.67198 * 11 9 8 13 13 H 1.09001 * 109.47005 * 35.00054 * 12 11 9 14 14 C 1.52999 * 109.47129 * 154.99397 * 12 11 9 15 15 N 1.46498 * 109.47473 * 305.00451 * 14 12 11 16 16 C 1.36936 * 120.00122 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00132 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00041 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99991 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00255 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47024 * 60.00109 * 20 18 16 22 22 H 1.48494 * 109.47541 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47086 * 300.00461 * 20 18 16 24 24 C 1.52994 * 109.47004 * 274.99690 * 12 11 9 25 25 C 1.53000 * 109.47245 * 64.99940 * 24 12 11 26 26 C 1.53003 * 109.46986 * 64.99702 * 25 24 12 27 27 C 1.52996 * 109.47191 * 184.99658 * 25 24 12 28 28 H 1.09007 * 109.46743 * 300.00417 * 1 2 3 29 29 H 1.08994 * 109.46809 * 59.99743 * 1 2 3 30 30 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46736 * 239.99510 * 2 1 3 32 32 H 1.09003 * 109.46581 * 120.00160 * 2 1 3 33 33 H 1.07995 * 125.57691 * 359.97438 * 4 3 2 34 34 H 1.08005 * 126.44789 * 180.23681 * 7 5 4 35 35 H 0.97003 * 119.99904 * 354.66937 * 11 9 8 36 36 H 1.08994 * 109.47401 * 184.99934 * 14 12 11 37 37 H 1.08999 * 109.46713 * 65.00388 * 14 12 11 38 38 H 0.96998 * 119.99617 * 359.97438 * 15 14 12 39 39 H 0.97000 * 120.00213 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.46997 * 184.99727 * 24 12 11 41 41 H 1.08995 * 109.47474 * 305.00029 * 24 12 11 42 42 H 1.09000 * 109.46987 * 305.00051 * 25 24 12 43 43 H 1.08999 * 109.47138 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.47450 * 300.00080 * 26 25 24 45 45 H 1.09000 * 109.46973 * 60.00340 * 26 25 24 46 46 H 1.09001 * 109.46980 * 60.00427 * 27 25 24 47 47 H 1.09001 * 109.47121 * 179.97438 * 27 25 24 48 48 H 1.09000 * 109.47476 * 300.00093 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.3782 2.0928 -1.0971 5 6 2.7760 3.3281 -0.7067 6 17 3.3292 4.6010 -1.7494 7 6 2.6571 3.3968 0.6855 8 6 2.1885 2.1725 1.1132 9 6 1.9143 1.7861 2.5013 10 8 1.5907 0.6423 2.7620 11 7 2.0207 2.6979 3.4881 12 6 1.6350 2.3446 4.8566 13 1 1.8849 1.3008 5.0465 14 6 2.3878 3.2372 5.8452 15 7 3.8281 3.1325 5.5988 16 6 4.7079 3.8477 6.3666 17 1 4.3400 4.4894 7.1535 18 6 6.0727 3.7481 6.1335 19 7 6.5211 2.9665 5.1741 20 14 7.2728 4.7243 7.1803 21 1 7.1224 4.3297 8.6041 22 1 8.6609 4.4450 6.7328 23 1 6.9892 6.1748 7.0362 24 6 0.1286 2.5483 5.0305 25 6 -0.6259 1.5670 4.1311 26 6 -0.3544 0.1354 4.5978 27 6 -2.1267 1.8533 4.2103 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.3519 1.7339 -2.1153 34 1 2.8909 4.2476 1.3083 35 1 2.3528 3.5880 3.2922 36 1 2.1692 2.9164 6.8637 37 1 2.0711 4.2719 5.7144 38 1 4.1585 2.5565 4.8918 39 1 7.4747 2.8966 5.0114 40 1 -0.1442 2.3711 6.0708 41 1 -0.1342 3.5695 4.7547 42 1 -0.2874 1.6839 3.1016 43 1 -0.8922 -0.5636 3.9574 44 1 0.7149 -0.0685 4.5414 45 1 -0.6928 0.0185 5.6273 46 1 -2.3201 2.8732 3.8778 47 1 -2.6642 1.1545 3.5693 48 1 -2.4651 1.7364 5.2398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753741338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:09 Heat of formation + Delta-G solvation = 1.110332 kcal Electronic energy + Delta-G solvation = -28856.694500 eV Core-core repulsion = 24973.230549 eV Total energy + Delta-G solvation = -3883.463952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53206 -39.46981 -36.68242 -36.33590 -35.01652 -34.25719 -33.30509 -31.33341 -29.80469 -29.27341 -28.48598 -26.93993 -25.56720 -23.83223 -23.21424 -22.45943 -20.95524 -20.32914 -19.75352 -19.41627 -17.91075 -17.08724 -16.19291 -15.81725 -15.47339 -15.13422 -14.78450 -14.56836 -14.24330 -13.93835 -13.90160 -13.77969 -13.30844 -13.14554 -13.01938 -12.88230 -12.83205 -12.68285 -12.21996 -12.15012 -12.09417 -11.97668 -11.56659 -11.42975 -11.33920 -11.06087 -10.97889 -10.82913 -10.79458 -10.55261 -10.32021 -10.26375 -10.01365 -9.71512 -9.60232 -8.90687 -8.71775 -8.65072 -8.19342 -6.95330 -5.76462 -3.06641 1.47960 2.11390 2.46818 2.81510 3.44117 3.48685 3.49888 3.53436 3.61603 4.56624 4.58219 4.78193 4.85994 4.88657 4.95988 5.12439 5.14043 5.14590 5.21152 5.43748 5.52679 5.54036 5.58034 5.61717 5.68079 5.73105 5.82106 5.88407 5.95084 5.97886 5.99760 6.06502 6.09097 6.19924 6.25973 6.40335 6.44750 6.47723 6.60570 6.64190 6.76146 6.82227 6.94189 7.02796 7.68663 7.84392 8.40916 8.48469 9.52920 10.08485 10.43787 11.45526 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007669 B = 0.004292 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3650.048521 B = 6521.754415 C = 9106.218380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.400 5.400 4 C 0.025 3.975 5 C -0.120 4.120 6 Cl -0.055 7.055 7 C -0.127 4.127 8 C -0.026 4.026 9 C 0.590 3.410 10 O -0.543 6.543 11 N -0.695 5.695 12 C 0.139 3.861 13 H 0.094 0.906 14 C 0.144 3.856 15 N -0.731 5.731 16 C -0.245 4.245 17 H 0.070 0.930 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.123 4.123 25 C -0.091 4.091 26 C -0.140 4.140 27 C -0.146 4.146 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.173 0.827 34 H 0.154 0.846 35 H 0.406 0.594 36 H 0.034 0.966 37 H 0.024 0.976 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.078 0.922 45 H 0.039 0.961 46 H 0.048 0.952 47 H 0.047 0.953 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.640 -3.759 -12.511 20.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.073 5.073 4 C -0.112 4.112 5 C -0.153 4.153 6 Cl -0.027 7.027 7 C -0.153 4.153 8 C -0.140 4.140 9 C 0.377 3.623 10 O -0.423 6.423 11 N -0.345 5.345 12 C 0.034 3.966 13 H 0.112 0.888 14 C 0.016 3.984 15 N -0.376 5.376 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.162 4.162 25 C -0.110 4.110 26 C -0.197 4.197 27 C -0.203 4.203 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.191 0.809 34 H 0.171 0.829 35 H 0.241 0.759 36 H 0.051 0.949 37 H 0.042 0.958 38 H 0.221 0.779 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.898 -4.733 -12.228 20.608 hybrid contribution 1.162 1.008 0.021 1.539 sum -14.735 -3.725 -12.208 19.494 Atomic orbital electron populations 1.22072 0.93972 1.03023 1.02873 1.22112 0.95915 0.78998 1.05362 1.43950 1.46785 1.11775 1.04802 1.21613 1.05696 0.91591 0.92260 1.19868 1.12575 0.91267 0.91593 1.98316 1.88664 1.49772 1.65909 1.21288 1.03765 0.97031 0.93260 1.20143 1.13470 0.91802 0.88568 1.16767 0.77169 0.85288 0.83057 1.90754 1.49145 1.18712 1.83674 1.45641 1.65222 1.15862 1.07798 1.21403 0.93244 1.01516 0.80424 0.88836 1.20966 0.86038 0.96065 0.95369 1.42331 0.99018 1.54810 1.41395 1.19148 0.87451 1.19654 1.11325 0.91232 1.24737 0.96892 1.00079 0.98904 1.69656 1.13396 1.41573 1.33113 0.86286 0.80551 0.79648 0.79768 1.21292 1.21714 1.21243 1.22027 0.94473 0.99421 1.00266 1.21098 0.94075 0.95592 1.00226 1.21854 1.03540 0.95263 0.99065 1.21860 0.96480 1.00736 1.01246 0.91301 0.92516 0.90720 0.89410 0.86877 0.80930 0.82875 0.75854 0.94876 0.95807 0.77942 0.93428 0.90967 0.91836 0.91111 0.93956 0.90323 0.94149 0.93273 0.93343 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 10.24 37.16 0.38 -1.06 16 2 C 0.10 0.97 6.19 -4.04 -0.03 0.94 16 3 N -0.40 -4.90 2.76 -112.83 -0.31 -5.21 16 4 C 0.03 0.28 11.35 -16.84 -0.19 0.09 16 5 C -0.12 -1.56 6.66 -39.93 -0.27 -1.83 16 6 Cl -0.06 -0.67 29.30 -51.86 -1.52 -2.19 16 7 C -0.13 -1.80 10.35 -39.09 -0.40 -2.20 16 8 C -0.03 -0.37 6.88 -81.98 -0.56 -0.94 16 9 C 0.59 9.18 6.12 -12.86 -0.08 9.10 16 10 O -0.54 -8.84 10.09 5.19 0.05 -8.79 16 11 N -0.70 -10.76 4.45 -55.12 -0.25 -11.00 16 12 C 0.14 2.19 2.33 -67.93 -0.16 2.03 16 13 H 0.09 1.66 5.86 -51.93 -0.30 1.36 16 14 C 0.14 2.71 5.82 -4.04 -0.02 2.69 16 15 N -0.73 -17.78 5.43 -59.92 -0.33 -18.10 16 16 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 24 C -0.12 -1.60 4.36 -26.73 -0.12 -1.71 16 25 C -0.09 -1.15 2.38 -90.62 -0.22 -1.37 16 26 C -0.14 -1.84 8.12 37.16 0.30 -1.54 16 27 C -0.15 -1.57 9.19 37.16 0.34 -1.23 16 28 H 0.07 0.76 8.10 -51.92 -0.42 0.34 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.11 1.35 6.52 -51.93 -0.34 1.01 16 33 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.15 2.09 7.45 -52.48 -0.39 1.69 16 35 H 0.41 6.24 7.50 -40.82 -0.31 5.93 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.39 10.10 7.33 -40.82 -0.30 9.80 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.99 5.31 -51.93 -0.28 0.72 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 1.21 4.70 -51.93 -0.24 0.96 16 45 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -30.53 396.11 -9.57 -40.09 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -7.62 Total: 13.45 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -1.27 Total: -4.23 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -0.16 Total: -61.51 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.05 Total: -8.79 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.52 Total: -2.19 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.53 -9.57 -40.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753741338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.205 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds