Wall clock time and date at job start Sat Apr 11 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47529 * 2 1 4 4 C 1.35629 * 125.67266 * 264.69603 * 3 2 1 5 5 C 1.35520 * 108.85322 * 179.97438 * 4 3 2 6 6 Cl 1.73595 * 126.07721 * 179.97438 * 5 4 3 7 7 C 1.39895 * 107.84688 * 359.77318 * 5 4 3 8 8 C 1.37638 * 125.67930 * 84.68803 * 3 2 1 9 9 C 1.46673 * 126.22212 * 359.96926 * 8 3 2 10 10 O 1.21699 * 119.99895 * 5.47701 * 9 8 3 11 11 N 1.34771 * 119.99886 * 185.48311 * 9 8 3 12 12 C 1.46504 * 120.00027 * 174.67198 * 11 9 8 13 13 H 1.09001 * 109.47005 * 35.00054 * 12 11 9 14 14 C 1.52999 * 109.47129 * 154.99397 * 12 11 9 15 15 N 1.46498 * 109.47473 * 305.00451 * 14 12 11 16 16 C 1.36936 * 120.00122 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00132 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00041 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99991 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00255 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47024 * 60.00109 * 20 18 16 22 22 H 1.48494 * 109.47541 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47086 * 300.00461 * 20 18 16 24 24 C 1.52994 * 109.47004 * 274.99690 * 12 11 9 25 25 C 1.53000 * 109.47245 * 64.99940 * 24 12 11 26 26 C 1.53003 * 109.46986 * 64.99702 * 25 24 12 27 27 C 1.52996 * 109.47191 * 184.99658 * 25 24 12 28 28 H 1.09007 * 109.46743 * 300.00417 * 1 2 3 29 29 H 1.08994 * 109.46809 * 59.99743 * 1 2 3 30 30 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46736 * 239.99510 * 2 1 3 32 32 H 1.09003 * 109.46581 * 120.00160 * 2 1 3 33 33 H 1.07995 * 125.57691 * 359.97438 * 4 3 2 34 34 H 1.08005 * 126.44789 * 180.23681 * 7 5 4 35 35 H 0.97003 * 119.99904 * 354.66937 * 11 9 8 36 36 H 1.08994 * 109.47401 * 184.99934 * 14 12 11 37 37 H 1.08999 * 109.46713 * 65.00388 * 14 12 11 38 38 H 0.96998 * 119.99617 * 359.97438 * 15 14 12 39 39 H 0.97000 * 120.00213 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.46997 * 184.99727 * 24 12 11 41 41 H 1.08995 * 109.47474 * 305.00029 * 24 12 11 42 42 H 1.09000 * 109.46987 * 305.00051 * 25 24 12 43 43 H 1.08999 * 109.47138 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.47450 * 300.00080 * 26 25 24 45 45 H 1.09000 * 109.46973 * 60.00340 * 26 25 24 46 46 H 1.09001 * 109.46980 * 60.00427 * 27 25 24 47 47 H 1.09001 * 109.47121 * 179.97438 * 27 25 24 48 48 H 1.09000 * 109.47476 * 300.00093 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.3782 2.0928 -1.0971 5 6 2.7760 3.3281 -0.7067 6 17 3.3292 4.6010 -1.7494 7 6 2.6571 3.3968 0.6855 8 6 2.1885 2.1725 1.1132 9 6 1.9143 1.7861 2.5013 10 8 1.5907 0.6423 2.7620 11 7 2.0207 2.6979 3.4881 12 6 1.6350 2.3446 4.8566 13 1 1.8849 1.3008 5.0465 14 6 2.3878 3.2372 5.8452 15 7 3.8281 3.1325 5.5988 16 6 4.7079 3.8477 6.3666 17 1 4.3400 4.4894 7.1535 18 6 6.0727 3.7481 6.1335 19 7 6.5211 2.9665 5.1741 20 14 7.2728 4.7243 7.1803 21 1 7.1224 4.3297 8.6041 22 1 8.6609 4.4450 6.7328 23 1 6.9892 6.1748 7.0362 24 6 0.1286 2.5483 5.0305 25 6 -0.6259 1.5670 4.1311 26 6 -0.3544 0.1354 4.5978 27 6 -2.1267 1.8533 4.2103 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.3519 1.7339 -2.1153 34 1 2.8909 4.2476 1.3083 35 1 2.3528 3.5880 3.2922 36 1 2.1692 2.9164 6.8637 37 1 2.0711 4.2719 5.7144 38 1 4.1585 2.5565 4.8918 39 1 7.4747 2.8966 5.0114 40 1 -0.1442 2.3711 6.0708 41 1 -0.1342 3.5695 4.7547 42 1 -0.2874 1.6839 3.1016 43 1 -0.8922 -0.5636 3.9574 44 1 0.7149 -0.0685 4.5414 45 1 -0.6928 0.0185 5.6273 46 1 -2.3201 2.8732 3.8778 47 1 -2.6642 1.1545 3.5693 48 1 -2.4651 1.7364 5.2398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753741338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:08 Heat of formation + Delta-G solvation = -15.858871 kcal Electronic energy + Delta-G solvation = -28857.430340 eV Core-core repulsion = 24973.230549 eV Total energy + Delta-G solvation = -3884.199792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.53972 -40.66383 -37.91380 -37.33283 -36.44083 -35.37844 -34.65204 -33.03582 -31.20143 -30.17775 -29.65082 -27.92920 -27.17184 -24.92861 -24.53477 -23.84160 -22.14341 -21.46314 -20.88795 -20.47975 -19.27238 -18.75183 -17.38696 -16.99113 -16.83137 -16.31912 -16.09239 -15.64598 -15.46459 -15.22284 -15.10559 -14.85122 -14.79286 -14.49539 -14.27890 -14.09739 -13.79271 -13.63878 -13.58035 -13.24282 -13.02872 -12.95673 -12.93836 -12.74432 -12.54747 -12.37179 -12.31485 -12.13424 -12.11654 -11.87337 -11.80449 -11.59870 -11.38457 -11.25978 -10.95021 -10.76936 -9.93807 -9.68447 -9.19796 -8.98807 -7.92142 -5.21531 0.41929 1.16218 1.47211 1.48888 1.51326 1.57409 1.79287 2.36730 2.49997 2.58106 3.42124 3.62823 3.77687 3.83680 3.98236 4.01519 4.09496 4.13464 4.22799 4.26405 4.38852 4.42418 4.42966 4.53223 4.68619 4.76656 4.82223 4.87313 4.88936 4.91059 4.92512 4.99909 5.02321 5.10725 5.17962 5.20146 5.26331 5.38986 5.41500 5.52332 5.58345 5.63793 5.69127 5.78662 6.12326 6.28041 6.60732 7.27168 7.35763 8.10042 8.33425 9.30536 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007669 B = 0.004292 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3650.048521 B = 6521.754415 C = 9106.218380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.093 3.907 3 N -0.399 5.399 4 C 0.046 3.954 5 C -0.140 4.140 6 Cl -0.051 7.051 7 C -0.137 4.137 8 C -0.051 4.051 9 C 0.587 3.413 10 O -0.554 6.554 11 N -0.697 5.697 12 C 0.151 3.849 13 H 0.072 0.928 14 C 0.144 3.856 15 N -0.742 5.742 16 C -0.244 4.244 17 H 0.078 0.922 18 C -0.072 4.072 19 N -0.968 5.968 20 Si 0.971 3.029 21 H -0.279 1.279 22 H -0.299 1.299 23 H -0.276 1.276 24 C -0.115 4.115 25 C -0.087 4.087 26 C -0.134 4.134 27 C -0.140 4.140 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.089 0.911 33 H 0.212 0.788 34 H 0.148 0.852 35 H 0.405 0.595 36 H 0.038 0.962 37 H 0.036 0.964 38 H 0.374 0.626 39 H 0.249 0.751 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.141 -3.536 -13.201 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 N -0.071 5.071 4 C -0.092 4.092 5 C -0.173 4.173 6 Cl -0.022 7.022 7 C -0.164 4.164 8 C -0.165 4.165 9 C 0.375 3.625 10 O -0.435 6.435 11 N -0.347 5.347 12 C 0.046 3.954 13 H 0.090 0.910 14 C 0.017 3.983 15 N -0.385 5.385 16 C -0.376 4.376 17 H 0.096 0.904 18 C -0.264 4.264 19 N -0.618 5.618 20 Si 0.800 3.200 21 H -0.205 1.205 22 H -0.226 1.226 23 H -0.202 1.202 24 C -0.153 4.153 25 C -0.105 4.105 26 C -0.191 4.191 27 C -0.197 4.197 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.140 0.860 32 H 0.108 0.892 33 H 0.228 0.772 34 H 0.166 0.834 35 H 0.240 0.760 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.206 0.794 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.453 -4.499 -12.889 22.158 hybrid contribution 1.569 0.913 0.204 1.827 sum -15.883 -3.586 -12.685 20.641 Atomic orbital electron populations 1.22003 0.93014 1.03930 1.02100 1.22285 0.96668 0.77868 1.05858 1.44184 1.46209 1.12376 1.04375 1.22198 1.02994 0.90642 0.93346 1.19995 1.13751 0.92307 0.91226 1.98312 1.88683 1.49730 1.65494 1.21382 1.03857 0.96951 0.94188 1.20000 1.15290 0.92621 0.88620 1.16955 0.76837 0.85052 0.83629 1.90747 1.49729 1.19073 1.83997 1.45615 1.65535 1.15862 1.07722 1.21200 0.94781 0.99373 0.80037 0.91040 1.21128 0.83452 0.97324 0.96413 1.42504 1.01066 1.54215 1.40715 1.19584 0.88108 1.18906 1.11002 0.90375 1.25521 0.98728 1.01694 1.00482 1.69827 1.13055 1.43735 1.35204 0.85255 0.77797 0.78621 0.78322 1.20510 1.22554 1.20225 1.21970 0.92074 1.00169 1.01124 1.21022 0.95463 0.94983 0.99071 1.21767 1.01770 0.95827 0.99736 1.21798 0.94667 1.01239 1.02041 0.93919 0.91282 0.88980 0.86012 0.89250 0.77175 0.83412 0.75969 0.94430 0.94563 0.79386 0.94214 0.89817 0.90844 0.92680 0.93655 0.92968 0.93199 0.92699 0.92792 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 10.24 71.98 0.74 -1.76 16 2 C 0.09 1.73 6.19 86.38 0.53 2.27 16 3 N -0.40 -9.38 2.76 -510.88 -1.41 -10.79 16 4 C 0.05 0.95 11.35 83.48 0.95 1.89 16 5 C -0.14 -3.53 6.66 22.04 0.15 -3.38 16 6 Cl -0.05 -1.19 29.30 -2.72 -0.08 -1.27 16 7 C -0.14 -3.94 10.35 22.59 0.23 -3.71 16 8 C -0.05 -1.51 6.88 40.35 0.28 -1.23 16 9 C 0.59 18.92 6.12 86.45 0.53 19.45 16 10 O -0.55 -18.78 10.09 -4.34 -0.04 -18.83 16 11 N -0.70 -22.29 4.45 -446.51 -1.99 -24.28 16 12 C 0.15 4.82 2.33 44.99 0.10 4.93 16 13 H 0.07 2.64 5.86 -2.39 -0.01 2.62 16 14 C 0.14 5.40 5.82 86.38 0.50 5.90 16 15 N -0.74 -36.66 5.43 -343.47 -1.87 -38.52 16 16 C -0.24 -13.36 9.99 84.03 0.84 -12.52 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 18 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 19 N -0.97 -59.52 13.06 21.65 0.28 -59.24 16 20 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 22 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 C -0.11 -2.87 4.36 30.59 0.13 -2.74 16 25 C -0.09 -2.12 2.38 -10.79 -0.03 -2.15 16 26 C -0.13 -3.48 8.12 71.98 0.58 -2.90 16 27 C -0.14 -2.75 9.19 71.98 0.66 -2.09 16 28 H 0.04 0.93 8.10 -2.38 -0.02 0.91 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.12 1.44 8.12 -2.39 -0.02 1.42 16 32 H 0.09 2.14 6.52 -2.39 -0.02 2.13 16 33 H 0.21 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.15 4.23 7.45 -2.91 -0.02 4.21 16 35 H 0.40 12.95 7.50 -92.71 -0.70 12.25 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.37 20.20 7.33 -92.71 -0.68 19.52 16 39 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.05 1.55 5.31 -2.39 -0.01 1.53 16 43 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.05 1.65 4.70 -2.39 -0.01 1.64 16 45 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -66.61 396.11 3.19 -63.42 By element: Atomic # 1 Polarization: 43.54 SS G_CDS: -0.40 Total: 43.14 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 6.67 Total: -1.67 kcal Atomic # 7 Polarization: -127.85 SS G_CDS: -4.98 Total: -132.83 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.04 Total: -18.83 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -66.61 3.19 -63.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753741338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.559 kcal (2) G-P(sol) polarization free energy of solvation -66.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds