Wall clock time and date at job start Sat Apr 11 2020 06:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20768 * 120.00144 * 2 1 4 4 C 1.50702 * 120.00581 * 180.02562 * 2 1 3 5 5 C 1.52995 * 109.47846 * 180.02562 * 4 2 1 6 6 C 1.52990 * 109.47353 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47398 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 O 1.42894 * 112.94182 * 53.42971 * 11 10 9 13 13 C 1.53939 * 113.73376 * 281.72718 * 11 10 9 14 14 N 1.47965 * 86.18318 * 221.92110 * 13 11 10 15 15 C 1.46896 * 111.00100 * 137.57689 * 14 13 11 16 16 C 1.50699 * 109.46970 * 70.64608 * 15 14 13 17 17 O 1.21294 * 120.00179 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00421 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00345 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99689 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99751 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 120.00560 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47064 * 89.99583 * 23 21 19 25 25 H 1.48499 * 109.47165 * 209.99997 * 23 21 19 26 26 H 1.48502 * 109.46680 * 330.00113 * 23 21 19 27 27 C 1.47972 * 90.75954 * 24.68659 * 14 13 11 28 28 H 1.08998 * 109.46853 * 270.00048 * 1 2 3 29 29 H 1.08998 * 109.47374 * 30.00185 * 1 2 3 30 30 H 1.08998 * 109.46985 * 149.99982 * 1 2 3 31 31 H 1.08999 * 109.46772 * 59.99276 * 4 2 1 32 32 H 1.09003 * 109.46720 * 300.00500 * 4 2 1 33 33 H 1.08998 * 109.47142 * 59.99444 * 5 4 2 34 34 H 1.09011 * 109.46657 * 300.00002 * 5 4 2 35 35 H 1.08998 * 109.47508 * 59.99597 * 6 5 4 36 36 H 1.09002 * 109.47337 * 299.99883 * 6 5 4 37 37 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 38 38 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 39 39 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 40 40 H 0.96702 * 114.00177 * 309.66781 * 12 11 10 41 41 H 1.09004 * 113.75478 * 336.23643 * 13 11 10 42 42 H 1.08996 * 113.76197 * 107.59918 * 13 11 10 43 43 H 1.09004 * 109.46697 * 190.64022 * 15 14 13 44 44 H 1.08997 * 109.47494 * 310.64441 * 15 14 13 45 45 H 0.97010 * 119.99656 * 359.97438 * 18 16 15 46 46 H 0.97002 * 120.00132 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.75645 * 220.99382 * 27 14 13 48 48 H 1.09000 * 113.75871 * 89.63163 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 6 3.7648 -1.0255 0.0002 6 6 4.5298 -2.3504 -0.0011 7 6 6.0114 -2.0751 -0.0009 8 8 6.4156 -0.9316 -0.0004 9 7 6.8873 -3.0995 -0.0024 10 6 8.3276 -2.8317 0.0038 11 6 9.0926 -4.1567 0.0076 12 8 8.6967 -5.0314 -1.0508 13 6 9.1483 -4.8361 1.3878 14 7 10.5627 -5.1357 1.0734 15 6 11.4226 -4.9020 2.2412 16 6 11.1576 -5.9610 3.2801 17 8 10.3332 -6.8253 3.0686 18 7 11.8366 -5.9480 4.4442 19 6 11.5952 -6.9112 5.3895 20 1 10.8606 -7.6801 5.2015 21 6 12.2957 -6.8979 6.5894 22 7 12.0639 -7.8208 7.4957 23 14 13.5659 -5.5674 6.9150 24 1 12.9107 -4.4076 7.5712 25 1 14.6281 -6.1038 7.8033 26 1 14.1684 -5.1331 5.6290 27 6 10.6175 -3.9913 0.1370 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.9972 -1.8762 -0.8908 32 1 1.9972 -1.8770 0.8891 33 1 4.0278 -0.4545 0.8906 34 1 4.0284 -0.4533 -0.8894 35 1 4.2667 -2.9211 -0.8917 36 1 4.2662 -2.9230 0.8882 37 1 6.5639 -4.0140 -0.0032 38 1 8.5948 -2.2604 -0.8852 39 1 8.5870 -2.2599 0.8947 40 1 7.7407 -5.1610 -1.1173 41 1 9.0205 -4.1464 2.2222 42 1 8.5187 -5.7223 1.4668 43 1 12.4684 -4.9452 1.9369 44 1 11.2065 -3.9194 2.6607 45 1 12.4962 -5.2570 4.6132 46 1 12.5532 -7.8119 8.3333 47 1 11.1619 -4.2027 -0.7834 48 1 10.9195 -3.0546 0.6055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754763418.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:14 Heat of formation + Delta-G solvation = -121.299645 kcal Electronic energy + Delta-G solvation = -28918.981654 eV Core-core repulsion = 24589.500443 eV Total energy + Delta-G solvation = -4329.481211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.84882 -40.05162 -39.55879 -38.14055 -35.96360 -34.78244 -34.48055 -33.95902 -31.72461 -31.32132 -30.50533 -28.83929 -27.15008 -26.25460 -24.88950 -23.12276 -22.19110 -20.75377 -20.08594 -20.00664 -19.39017 -18.39542 -17.88222 -16.75838 -16.65398 -16.51538 -16.13962 -15.73447 -15.69812 -15.54425 -15.31360 -15.13387 -14.86648 -14.60200 -14.08870 -13.97854 -13.57334 -13.34447 -13.20835 -13.05885 -13.03120 -12.72949 -12.50429 -12.37954 -12.35512 -12.23089 -12.12290 -11.87980 -11.81788 -11.43504 -11.21148 -11.15796 -10.85714 -10.61873 -10.26715 -10.04596 -9.99837 -9.96843 -9.59257 -9.45923 -8.79248 -8.39086 -8.20449 -6.33748 -3.85284 1.53937 2.33396 2.72072 3.00861 3.04645 3.13315 3.58751 3.59083 3.70127 3.90410 4.07915 4.13423 4.26557 4.45302 4.50291 4.51841 4.57807 4.60155 4.79513 4.82270 4.96908 4.99572 5.06438 5.13879 5.16858 5.17353 5.18904 5.35527 5.41552 5.49855 5.52453 5.56177 5.63147 5.68158 5.73285 5.88848 5.91026 6.00822 6.04696 6.44687 6.98618 7.07140 7.09303 7.36083 7.54960 7.88552 8.10861 8.56888 8.92078 9.39392 9.79612 10.79297 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013476 B = 0.001827 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.198104 B =15320.749646 C =16422.203405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.350 3.650 3 O -0.454 6.454 4 C -0.174 4.174 5 C -0.098 4.098 6 C -0.141 4.141 7 C 0.513 3.487 8 O -0.535 6.535 9 N -0.731 5.731 10 C 0.101 3.899 11 C 0.088 3.912 12 O -0.521 6.521 13 C -0.002 4.002 14 N -0.440 5.440 15 C 0.004 3.996 16 C 0.452 3.548 17 O -0.561 6.561 18 N -0.590 5.590 19 C -0.305 4.305 20 H 0.119 0.881 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.017 3.983 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.399 0.601 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.372 0.628 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.101 0.899 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.203 13.394 -17.111 28.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.226 3.774 3 O -0.328 6.328 4 C -0.211 4.211 5 C -0.136 4.136 6 C -0.181 4.181 7 C 0.300 3.700 8 O -0.411 6.411 9 N -0.385 5.385 10 C -0.024 4.024 11 C 0.046 3.954 12 O -0.325 6.325 13 C -0.131 4.131 14 N -0.162 5.162 15 C -0.128 4.128 16 C 0.238 3.762 17 O -0.442 6.442 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.112 4.112 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.234 0.766 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.219 0.781 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.074 0.926 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.120 0.880 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.230 13.407 -17.336 27.877 hybrid contribution 0.238 1.139 1.065 1.578 sum -16.992 14.546 -16.271 27.660 Atomic orbital electron populations 1.22307 0.94496 1.04768 1.04720 1.24649 0.91955 0.90386 0.70438 1.90461 1.71936 1.35219 1.35151 1.22188 0.96439 0.97664 1.04850 1.21157 0.91748 0.95795 1.04917 1.21700 0.91372 1.00305 1.04752 1.20722 0.88783 0.84931 0.75609 1.90745 1.80381 1.21318 1.48678 1.45940 1.06521 1.09623 1.76430 1.22018 0.79703 0.97149 1.03518 1.23033 0.95626 0.88156 0.88614 1.86638 1.27466 1.67058 1.51377 1.24549 0.92890 1.00682 0.94955 1.68484 1.02649 1.35410 1.09707 1.22555 0.99893 0.97683 0.92684 1.19546 0.85458 0.88163 0.83042 1.90561 1.36152 1.38980 1.78512 1.42216 1.37034 1.27930 1.15830 1.19421 1.22661 1.07168 0.94139 0.86300 1.25037 0.97999 0.97388 0.95692 1.69621 1.41647 1.33239 1.07568 0.86676 0.81856 0.82087 0.78807 1.19653 1.20110 1.19476 1.24131 0.92943 0.94742 0.99378 0.88647 0.89785 0.89645 0.88217 0.88125 0.90521 0.90593 0.88595 0.88456 0.76609 0.90317 0.90185 0.78103 0.90771 0.88101 0.88766 0.92625 0.79713 0.91592 0.88042 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.66 10.25 36.00 0.37 -0.29 16 2 C 0.35 2.23 7.27 -29.04 -0.21 2.02 16 3 O -0.45 -5.10 16.72 5.99 0.10 -5.00 16 4 C -0.17 -0.72 5.62 -27.88 -0.16 -0.88 16 5 C -0.10 -0.72 3.79 -26.74 -0.10 -0.82 16 6 C -0.14 -0.78 5.70 -27.89 -0.16 -0.94 16 7 C 0.51 4.82 7.83 -10.98 -0.09 4.74 16 8 O -0.54 -7.51 15.98 5.55 0.09 -7.42 16 9 N -0.73 -5.67 5.34 -60.30 -0.32 -5.99 16 10 C 0.10 0.95 5.28 -4.04 -0.02 0.93 16 11 C 0.09 0.95 1.52 -89.69 -0.14 0.81 16 12 O -0.52 -5.68 13.50 -35.23 -0.48 -6.15 16 13 C 0.00 -0.02 6.16 -2.76 -0.02 -0.04 16 14 N -0.44 -6.97 5.95 -239.59 -1.43 -8.40 16 15 C 0.00 0.07 5.31 -4.98 -0.03 0.04 16 16 C 0.45 10.24 7.59 -10.99 -0.08 10.15 16 17 O -0.56 -14.90 15.13 5.54 0.08 -14.82 16 18 N -0.59 -14.02 5.09 -10.97 -0.06 -14.08 16 19 C -0.31 -8.60 10.16 -14.93 -0.15 -8.76 16 20 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.63 13.96 55.50 0.77 -24.86 16 23 Si 0.88 19.31 27.74 -169.99 -4.71 14.60 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 27 C 0.02 0.20 7.38 -2.76 -0.02 0.18 16 28 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.09 8.12 -51.93 -0.42 -0.33 16 31 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 34 H 0.08 0.71 8.06 -51.92 -0.42 0.29 16 35 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.40 2.03 7.31 -40.82 -0.30 1.73 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.82 8.04 -51.93 -0.42 0.41 16 40 H 0.37 2.48 7.61 45.56 0.35 2.83 16 41 H 0.07 1.02 7.67 -51.93 -0.40 0.62 16 42 H 0.10 1.58 8.09 -51.93 -0.42 1.16 16 43 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.06 0.78 7.69 -51.93 -0.40 0.38 16 45 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.08 0.79 7.75 -51.93 -0.40 0.39 16 LS Contribution 402.61 15.07 6.07 6.07 Total: -1.00 -39.50 402.61 -7.62 -47.12 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.84 Total: 10.73 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -0.90 Total: 8.20 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -1.03 Total: -53.32 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.20 Total: -33.39 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -39.50 -7.62 -47.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754763418.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.183 kcal (2) G-P(sol) polarization free energy of solvation -39.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds