Wall clock time and date at job start Sat Apr 11 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47135 * 2 1 4 4 C 1.35309 * 125.87039 * 125.28959 * 3 2 1 5 5 C 1.35344 * 106.17651 * 180.18729 * 4 3 2 6 6 C 1.50702 * 126.75266 * 179.85487 * 5 4 3 7 7 N 1.46903 * 109.46970 * 94.71311 * 6 5 4 8 8 C 1.46905 * 110.99782 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47297 * 324.99604 * 8 7 6 10 10 C 1.52996 * 109.46987 * 85.00032 * 8 7 6 11 11 C 1.52997 * 109.46913 * 204.99832 * 8 7 6 12 12 H 1.09001 * 109.47502 * 300.00442 * 11 8 7 13 13 C 1.53006 * 109.47127 * 60.00285 * 11 8 7 14 14 N 1.46500 * 109.47007 * 180.02562 * 11 8 7 15 15 C 1.34773 * 119.99910 * 155.00372 * 14 11 8 16 16 O 1.21288 * 120.00271 * 359.97438 * 15 14 11 17 17 C 1.50699 * 119.99928 * 179.97438 * 15 14 11 18 18 S 1.81000 * 109.47331 * 179.97438 * 17 15 14 19 19 C 1.76196 * 100.00488 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99536 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00410 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99884 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00262 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46835 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46994 * 119.99648 * 23 21 19 26 26 H 1.48501 * 109.46906 * 240.00046 * 23 21 19 27 27 N 1.33774 * 106.49767 * 359.59447 * 5 4 3 28 28 N 1.28629 * 108.88382 * 0.26173 * 27 5 4 29 29 H 1.08997 * 109.47284 * 299.99995 * 1 2 3 30 30 H 1.09005 * 109.46917 * 60.00225 * 1 2 3 31 31 H 1.09000 * 109.47088 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46953 * 239.99634 * 2 1 3 33 33 H 1.09005 * 109.46917 * 119.99775 * 2 1 3 34 34 H 1.08003 * 126.91291 * 0.04656 * 4 3 2 35 35 H 1.09002 * 109.47093 * 334.71685 * 6 5 4 36 36 H 1.09002 * 109.47524 * 214.71379 * 6 5 4 37 37 H 1.00900 * 111.00151 * 56.04913 * 7 6 5 38 38 H 1.09001 * 109.46997 * 180.02562 * 10 8 7 39 39 H 1.09000 * 109.47054 * 299.99826 * 10 8 7 40 40 H 1.09000 * 109.47380 * 60.00430 * 10 8 7 41 41 H 1.09001 * 109.47002 * 299.99574 * 13 11 8 42 42 H 1.08993 * 109.46955 * 60.00011 * 13 11 8 43 43 H 1.09000 * 109.47050 * 179.97438 * 13 11 8 44 44 H 0.96995 * 120.00293 * 334.99551 * 14 11 8 45 45 H 1.09000 * 109.47712 * 299.99892 * 17 15 14 46 46 H 1.08995 * 109.47183 * 60.00106 * 17 15 14 47 47 H 0.97002 * 119.99766 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8798 1.9176 0.8950 5 6 3.0529 3.2079 0.5252 6 6 3.9215 4.2329 1.2078 7 7 5.2372 4.2724 0.5554 8 6 6.1130 5.2625 1.1963 9 1 5.5185 6.1147 1.5252 10 6 6.8040 4.6261 2.4039 11 6 7.1689 5.7336 0.1943 12 1 7.7635 4.8814 -0.1347 13 6 6.4779 6.3700 -1.0134 14 7 8.0428 6.7205 0.8336 15 6 9.2971 6.9061 0.3767 16 8 9.7026 6.2558 -0.5634 17 6 10.1958 7.9217 1.0340 18 16 11.8021 7.9352 0.2000 19 6 12.6271 9.1727 1.1448 20 1 12.1144 9.6604 1.9607 21 6 13.9358 9.5207 0.8406 22 7 14.5606 8.9267 -0.1542 23 14 14.8107 10.8322 1.8427 24 1 13.8964 11.3422 2.8960 25 1 16.0192 10.2466 2.4767 26 1 15.2116 11.9506 0.9518 27 7 2.3057 3.3930 -0.5689 28 7 1.7053 2.2918 -0.8542 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.3357 1.4173 1.7366 35 1 4.0443 3.9643 2.2571 36 1 3.4510 5.2135 1.1364 37 1 5.1455 4.4560 -0.4325 38 1 7.4536 5.3609 2.8797 39 1 6.0518 4.2904 3.1178 40 1 7.3987 3.7739 2.0750 41 1 5.8280 5.6354 -1.4890 42 1 5.8834 7.2222 -0.6844 43 1 7.2302 6.7061 -1.7271 44 1 7.7187 7.2404 1.5855 45 1 9.7408 8.9096 0.9628 46 1 10.3337 7.6599 2.0830 47 1 15.4751 9.1702 -0.3670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755227303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:26 Heat of formation + Delta-G solvation = 56.953008 kcal Electronic energy + Delta-G solvation = -26222.553199 eV Core-core repulsion = 22375.847225 eV Total energy + Delta-G solvation = -3846.705974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.60911 -39.62206 -37.76810 -36.02650 -34.57194 -32.41510 -32.27014 -31.32599 -30.60180 -29.70512 -28.43531 -25.85791 -25.46740 -25.15356 -23.50450 -22.23962 -21.10419 -20.59289 -20.25685 -17.96039 -17.74706 -16.88610 -16.71801 -16.43429 -15.71675 -15.38430 -15.00513 -14.95620 -14.79408 -14.64299 -14.30980 -13.89275 -13.67109 -13.52418 -13.26979 -13.16164 -13.05215 -12.83635 -12.60486 -12.40835 -12.22347 -12.08496 -11.88698 -11.79520 -11.57213 -11.37535 -11.13947 -11.05903 -11.00139 -10.76648 -10.68610 -10.45706 -9.78798 -9.61704 -9.35289 -9.06277 -8.89666 -8.72200 -8.20645 -6.47734 -6.20224 -3.90372 1.23377 1.90967 2.13436 3.03373 3.13755 3.22638 3.28958 3.33369 3.65585 3.81016 4.00670 4.15325 4.18177 4.21896 4.41873 4.44234 4.49496 4.65560 4.84678 4.88506 4.94502 5.03188 5.09133 5.15079 5.16823 5.21078 5.35947 5.38655 5.47560 5.53508 5.60069 5.65616 5.68983 5.72407 5.77160 5.91614 6.03806 6.14399 6.16419 6.18410 6.23242 6.60897 6.75854 7.05658 7.61420 7.74974 8.16842 8.36986 8.66225 9.25313 10.87257 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.041166 B = 0.001538 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.017662 B =18199.561519 C =18336.179735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.293 5.293 4 C -0.030 4.030 5 C -0.020 4.020 6 C 0.148 3.852 7 N -0.679 5.679 8 C 0.080 3.920 9 H 0.051 0.949 10 C -0.140 4.140 11 C 0.142 3.858 12 H 0.096 0.904 13 C -0.170 4.170 14 N -0.731 5.731 15 C 0.534 3.466 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.264 5.264 28 N -0.085 5.085 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.190 0.810 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.350 0.650 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.396 0.604 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.114 -16.775 6.553 34.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.087 5.087 4 C -0.182 4.182 5 C -0.158 4.158 6 C 0.017 3.983 7 N -0.314 5.314 8 C -0.030 4.030 9 H 0.069 0.931 10 C -0.198 4.198 11 C 0.037 3.963 12 H 0.114 0.886 13 C -0.228 4.228 14 N -0.386 5.386 15 C 0.320 3.680 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 N -0.132 5.132 28 N -0.064 5.064 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.207 0.793 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.171 0.829 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.230 0.770 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -28.860 -18.116 3.953 34.303 hybrid contribution 0.121 2.170 2.725 3.485 sum -28.738 -15.946 6.678 33.537 Atomic orbital electron populations 1.22084 0.92608 1.03806 1.04065 1.22121 0.96975 0.76434 1.05426 1.47476 1.30363 1.12037 1.18850 1.23408 0.99408 0.95436 0.99900 1.21826 1.02280 0.94758 0.96962 1.20102 0.86505 0.94528 0.97193 1.60579 1.11151 1.51476 1.08243 1.21734 0.93471 0.92919 0.94908 0.93119 1.21802 1.00168 1.01485 0.96314 1.20928 0.91052 0.92484 0.91857 0.88569 1.22268 1.01074 1.00797 0.98684 1.45977 1.13714 1.42132 1.36748 1.20280 0.81092 0.83246 0.83375 1.90706 1.73883 1.46966 1.27411 1.23531 1.02832 0.99884 1.04149 1.85408 1.01591 1.52547 1.43807 1.22913 1.00992 1.24729 1.19677 0.90900 1.24988 0.96357 0.96807 0.95421 1.70032 1.12303 1.40634 1.27324 0.86126 0.79257 0.80552 0.79608 1.19622 1.20576 1.20584 1.75073 1.08668 1.16147 1.13271 1.78267 1.20857 0.92787 1.14488 0.91744 0.90606 0.89795 0.88164 0.87559 0.79251 0.89177 0.93152 0.82860 0.92047 0.92803 0.91652 0.91848 0.92581 0.91129 0.76969 0.89283 0.89255 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.44 10.04 37.16 0.37 -0.07 16 2 C 0.11 0.33 7.17 -4.04 -0.03 0.30 16 3 N -0.29 -2.13 3.44 -61.26 -0.21 -2.34 16 4 C -0.03 -0.21 11.50 -17.05 -0.20 -0.40 16 5 C -0.02 -0.18 6.76 -82.78 -0.56 -0.74 16 6 C 0.15 1.13 6.05 -4.97 -0.03 1.10 16 7 N -0.68 -6.04 6.30 -107.99 -0.68 -6.72 16 8 C 0.08 0.71 2.28 -67.71 -0.15 0.56 16 9 H 0.05 0.41 7.80 -51.93 -0.41 0.00 16 10 C -0.14 -1.22 9.26 37.16 0.34 -0.88 16 11 C 0.14 1.68 2.29 -67.93 -0.16 1.53 16 12 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 13 C -0.17 -1.96 9.25 37.16 0.34 -1.61 16 14 N -0.73 -9.54 4.38 -53.80 -0.24 -9.77 16 15 C 0.53 9.85 7.81 -10.99 -0.09 9.76 16 16 O -0.52 -11.67 15.52 5.55 0.09 -11.59 16 17 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 23 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 N -0.26 -3.12 12.41 33.29 0.41 -2.71 16 28 N -0.08 -0.91 12.91 60.35 0.78 -0.13 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 32 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.11 0.02 8.07 -51.93 -0.42 -0.40 16 34 H 0.19 0.64 8.06 -52.48 -0.42 0.22 16 35 H 0.09 0.53 7.43 -51.93 -0.39 0.15 16 36 H 0.05 0.40 8.06 -51.93 -0.42 -0.02 16 37 H 0.35 3.45 6.16 -39.29 -0.24 3.21 16 38 H 0.06 0.54 7.44 -51.93 -0.39 0.16 16 39 H 0.05 0.39 7.45 -51.93 -0.39 0.00 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.65 6.21 -51.93 -0.32 0.32 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.40 4.02 8.39 -40.82 -0.34 3.68 16 45 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 46 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 405.21 15.07 6.11 6.11 Total: -1.00 -37.13 405.21 -7.45 -44.58 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.47 Total: 1.78 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 0.27 Total: -6.27 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.80 Total: -47.19 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.13 -7.45 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755227303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.534 kcal (2) G-P(sol) polarization free energy of solvation -37.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds