Wall clock time and date at job start Sat Apr 11 2020 06:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47135 * 2 1 4 4 C 1.35309 * 125.87039 * 125.28959 * 3 2 1 5 5 C 1.35344 * 106.17651 * 180.18729 * 4 3 2 6 6 C 1.50702 * 126.75266 * 179.85487 * 5 4 3 7 7 N 1.46903 * 109.46970 * 94.71311 * 6 5 4 8 8 C 1.46905 * 110.99782 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47297 * 324.99604 * 8 7 6 10 10 C 1.52996 * 109.46987 * 85.00032 * 8 7 6 11 11 C 1.52997 * 109.46913 * 204.99832 * 8 7 6 12 12 H 1.09001 * 109.47502 * 300.00442 * 11 8 7 13 13 C 1.53006 * 109.47127 * 60.00285 * 11 8 7 14 14 N 1.46500 * 109.47007 * 180.02562 * 11 8 7 15 15 C 1.34773 * 119.99910 * 155.00372 * 14 11 8 16 16 O 1.21288 * 120.00271 * 359.97438 * 15 14 11 17 17 C 1.50699 * 119.99928 * 179.97438 * 15 14 11 18 18 S 1.81000 * 109.47331 * 179.97438 * 17 15 14 19 19 C 1.76196 * 100.00488 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99536 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00410 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99884 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00262 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46835 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46994 * 119.99648 * 23 21 19 26 26 H 1.48501 * 109.46906 * 240.00046 * 23 21 19 27 27 N 1.33774 * 106.49767 * 359.59447 * 5 4 3 28 28 N 1.28629 * 108.88382 * 0.26173 * 27 5 4 29 29 H 1.08997 * 109.47284 * 299.99995 * 1 2 3 30 30 H 1.09005 * 109.46917 * 60.00225 * 1 2 3 31 31 H 1.09000 * 109.47088 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46953 * 239.99634 * 2 1 3 33 33 H 1.09005 * 109.46917 * 119.99775 * 2 1 3 34 34 H 1.08003 * 126.91291 * 0.04656 * 4 3 2 35 35 H 1.09002 * 109.47093 * 334.71685 * 6 5 4 36 36 H 1.09002 * 109.47524 * 214.71379 * 6 5 4 37 37 H 1.00900 * 111.00151 * 56.04913 * 7 6 5 38 38 H 1.09001 * 109.46997 * 180.02562 * 10 8 7 39 39 H 1.09000 * 109.47054 * 299.99826 * 10 8 7 40 40 H 1.09000 * 109.47380 * 60.00430 * 10 8 7 41 41 H 1.09001 * 109.47002 * 299.99574 * 13 11 8 42 42 H 1.08993 * 109.46955 * 60.00011 * 13 11 8 43 43 H 1.09000 * 109.47050 * 179.97438 * 13 11 8 44 44 H 0.96995 * 120.00293 * 334.99551 * 14 11 8 45 45 H 1.09000 * 109.47712 * 299.99892 * 17 15 14 46 46 H 1.08995 * 109.47183 * 60.00106 * 17 15 14 47 47 H 0.97002 * 119.99766 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8798 1.9176 0.8950 5 6 3.0529 3.2079 0.5252 6 6 3.9215 4.2329 1.2078 7 7 5.2372 4.2724 0.5554 8 6 6.1130 5.2625 1.1963 9 1 5.5185 6.1147 1.5252 10 6 6.8040 4.6261 2.4039 11 6 7.1689 5.7336 0.1943 12 1 7.7635 4.8814 -0.1347 13 6 6.4779 6.3700 -1.0134 14 7 8.0428 6.7205 0.8336 15 6 9.2971 6.9061 0.3767 16 8 9.7026 6.2558 -0.5634 17 6 10.1958 7.9217 1.0340 18 16 11.8021 7.9352 0.2000 19 6 12.6271 9.1727 1.1448 20 1 12.1144 9.6604 1.9607 21 6 13.9358 9.5207 0.8406 22 7 14.5606 8.9267 -0.1542 23 14 14.8107 10.8322 1.8427 24 1 13.8964 11.3422 2.8960 25 1 16.0192 10.2466 2.4767 26 1 15.2116 11.9506 0.9518 27 7 2.3057 3.3930 -0.5689 28 7 1.7053 2.2918 -0.8542 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.3357 1.4173 1.7366 35 1 4.0443 3.9643 2.2571 36 1 3.4510 5.2135 1.1364 37 1 5.1455 4.4560 -0.4325 38 1 7.4536 5.3609 2.8797 39 1 6.0518 4.2904 3.1178 40 1 7.3987 3.7739 2.0750 41 1 5.8280 5.6354 -1.4890 42 1 5.8834 7.2222 -0.6844 43 1 7.2302 6.7061 -1.7271 44 1 7.7187 7.2404 1.5855 45 1 9.7408 8.9096 0.9628 46 1 10.3337 7.6599 2.0830 47 1 15.4751 9.1702 -0.3670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755227303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:25 Heat of formation + Delta-G solvation = 28.453027 kcal Electronic energy + Delta-G solvation = -26223.789051 eV Core-core repulsion = 22375.847225 eV Total energy + Delta-G solvation = -3847.941826 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.19374 -40.90517 -38.76395 -36.55795 -35.52719 -34.57044 -33.18601 -31.83073 -31.60649 -30.42111 -29.79090 -27.64697 -26.49760 -25.53101 -24.45698 -22.79101 -21.78782 -21.53669 -21.41728 -19.81442 -18.35286 -17.96689 -17.58205 -17.35321 -16.87101 -16.65719 -16.40616 -16.06048 -15.89979 -15.37549 -15.24192 -14.97960 -14.68625 -14.58636 -14.30674 -14.23471 -13.82812 -13.67193 -13.51603 -13.20534 -13.14329 -13.08449 -12.90723 -12.76227 -12.63956 -12.55991 -12.43051 -12.31592 -12.25403 -11.76795 -11.69976 -11.52510 -11.14641 -11.01928 -10.92024 -10.24883 -10.23390 -10.09734 -9.40797 -8.64809 -8.33457 -6.11173 0.69177 1.27881 1.42331 1.44022 1.50022 1.54968 1.59863 1.65384 2.25008 2.29956 3.00925 3.23832 3.35253 3.48942 3.60153 3.69062 3.91637 3.97754 4.00701 4.05480 4.19389 4.21142 4.29756 4.33769 4.46846 4.49903 4.52689 4.55815 4.63142 4.71227 4.74955 4.80233 4.92752 5.00732 5.03691 5.06001 5.14556 5.22961 5.25687 5.43563 5.46516 5.49484 5.73552 6.03061 6.21463 6.29863 6.54539 7.08128 7.29304 7.54121 8.76040 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.041166 B = 0.001538 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.017662 B =18199.561519 C =18336.179735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.287 5.287 4 C -0.018 4.018 5 C -0.040 4.040 6 C 0.152 3.848 7 N -0.683 5.683 8 C 0.092 3.908 9 H 0.072 0.928 10 C -0.138 4.138 11 C 0.144 3.856 12 H 0.067 0.933 13 C -0.164 4.164 14 N -0.703 5.703 15 C 0.537 3.463 16 O -0.565 6.565 17 C -0.129 4.129 18 S -0.153 6.153 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.275 1.275 27 N -0.305 5.305 28 N -0.122 5.122 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.142 0.858 34 H 0.229 0.771 35 H 0.114 0.886 36 H 0.048 0.952 37 H 0.342 0.658 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.416 0.584 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.657 -16.870 9.745 36.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.081 5.081 4 C -0.171 4.171 5 C -0.179 4.179 6 C 0.022 3.978 7 N -0.318 5.318 8 C -0.018 4.018 9 H 0.090 0.910 10 C -0.196 4.196 11 C 0.038 3.962 12 H 0.085 0.915 13 C -0.222 4.222 14 N -0.358 5.358 15 C 0.322 3.678 16 O -0.443 6.443 17 C -0.280 4.280 18 S 0.074 5.926 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.549 5.549 23 Si 0.820 3.180 24 H -0.179 1.179 25 H -0.199 1.199 26 H -0.200 1.200 27 N -0.172 5.172 28 N -0.101 5.101 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.160 0.840 34 H 0.245 0.755 35 H 0.132 0.868 36 H 0.066 0.934 37 H 0.163 0.837 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.253 0.747 45 H 0.127 0.873 46 H 0.130 0.870 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -30.481 -18.217 7.169 36.227 hybrid contribution 0.453 2.067 1.749 2.745 sum -30.029 -16.150 8.917 35.243 Atomic orbital electron populations 1.22055 0.92573 1.04921 1.02569 1.22565 0.97073 0.74623 1.07548 1.47861 1.29585 1.12805 1.17887 1.24014 0.98207 0.94805 1.00064 1.22185 1.02679 0.96205 0.96842 1.20175 0.85387 0.94268 0.97989 1.60614 1.11998 1.51326 1.07868 1.21623 0.92625 0.93711 0.93840 0.91028 1.21798 1.00548 1.00780 0.96462 1.20990 0.91122 0.91070 0.92974 0.91485 1.22198 1.00435 1.01727 0.97880 1.45673 1.11877 1.41731 1.36478 1.20038 0.82387 0.82558 0.82777 1.90699 1.75172 1.48794 1.29655 1.23369 0.98717 1.01675 1.04241 1.85611 1.07240 1.53266 1.46483 1.23244 1.01551 1.24680 1.19783 0.89853 1.26123 0.97220 0.99256 0.96533 1.70198 1.12809 1.42555 1.29318 0.84910 0.77943 0.77086 0.78025 1.17928 1.19933 1.20046 1.75004 1.10009 1.17250 1.14929 1.78188 1.22235 0.93509 1.16176 0.92359 0.92926 0.87337 0.87490 0.83983 0.75470 0.86788 0.93382 0.83733 0.92016 0.90493 0.93511 0.90626 0.90862 0.94294 0.74671 0.87266 0.87030 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 10.04 71.98 0.72 0.06 16 2 C 0.10 0.38 7.17 86.38 0.62 1.00 16 3 N -0.29 -3.77 3.44 -347.73 -1.20 -4.97 16 4 C -0.02 -0.21 11.50 83.49 0.96 0.75 16 5 C -0.04 -0.67 6.76 41.60 0.28 -0.39 16 6 C 0.15 1.97 6.05 85.56 0.52 2.49 16 7 N -0.68 -10.92 6.30 -495.56 -3.12 -14.04 16 8 C 0.09 1.42 2.28 44.91 0.10 1.52 16 9 H 0.07 0.87 7.80 -2.39 -0.02 0.85 16 10 C -0.14 -2.03 9.26 71.98 0.67 -1.37 16 11 C 0.14 3.28 2.29 44.99 0.10 3.38 16 12 H 0.07 1.98 7.58 -2.39 -0.02 1.97 16 13 C -0.16 -3.71 9.25 71.98 0.67 -3.04 16 14 N -0.70 -17.28 4.38 -442.52 -1.94 -19.22 16 15 C 0.54 19.68 7.81 87.66 0.68 20.37 16 16 O -0.57 -26.47 15.52 -3.05 -0.05 -26.52 16 17 C -0.13 -5.05 6.16 71.24 0.44 -4.62 16 18 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 19 C -0.54 -31.13 9.50 67.95 0.65 -30.48 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.76 5.49 84.86 0.47 1.22 16 22 N -0.91 -56.35 13.22 21.65 0.29 -56.06 16 23 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 N -0.31 -7.24 12.41 -48.60 -0.60 -7.84 16 28 N -0.12 -2.65 12.91 37.02 0.48 -2.18 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.05 0.47 8.12 -2.38 -0.02 0.45 16 31 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.14 -0.48 8.07 -2.38 -0.02 -0.50 16 34 H 0.23 0.55 8.06 -2.91 -0.02 0.53 16 35 H 0.11 0.91 7.43 -2.39 -0.02 0.89 16 36 H 0.05 0.65 8.06 -2.39 -0.02 0.63 16 37 H 0.34 6.46 6.16 -89.69 -0.55 5.90 16 38 H 0.06 0.91 7.44 -2.39 -0.02 0.89 16 39 H 0.08 0.80 7.45 -2.39 -0.02 0.78 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 1.53 6.21 -2.39 -0.01 1.51 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.42 7.16 8.39 -92.71 -0.78 6.38 16 45 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 46 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 47 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -85.95 405.21 1.25 -84.70 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -0.34 Total: 19.26 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 6.87 Total: -9.10 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -6.10 Total: -104.31 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -85.95 1.25 -84.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755227303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.152 kcal (2) G-P(sol) polarization free energy of solvation -85.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds