Wall clock time and date at job start Sat Apr 11 2020 06:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46614 * 2 1 4 4 C 1.35316 * 125.86593 * 125.29511 * 3 2 1 5 5 C 1.35352 * 106.17450 * 180.18272 * 4 3 2 6 6 C 1.50701 * 126.75065 * 179.85337 * 5 4 3 7 7 N 1.46896 * 109.47242 * 94.71457 * 6 5 4 8 8 C 1.46897 * 111.00113 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47406 * 318.68161 * 8 7 6 10 10 C 1.53003 * 109.46969 * 78.67910 * 8 7 6 11 11 C 1.53001 * 109.47376 * 198.67376 * 8 7 6 12 12 N 1.46501 * 109.46330 * 56.70224 * 11 8 7 13 13 C 1.46497 * 120.00180 * 83.70337 * 12 11 8 14 14 C 1.34777 * 120.00028 * 263.69485 * 12 11 8 15 15 O 1.21285 * 120.00002 * 0.02562 * 14 12 11 16 16 C 1.50702 * 120.00267 * 179.72859 * 14 12 11 17 17 S 1.80993 * 109.47185 * 180.02562 * 16 14 12 18 18 C 1.76205 * 99.99818 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00023 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99825 * 179.97438 * 18 17 16 21 21 N 1.31638 * 120.00362 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00136 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46887 * 59.99634 * 22 20 18 24 24 H 1.48494 * 109.47284 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46820 * 299.99972 * 22 20 18 26 26 N 1.33771 * 106.49457 * 359.59664 * 5 4 3 27 27 N 1.28629 * 108.88572 * 0.25450 * 26 5 4 28 28 H 1.09006 * 109.46705 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47077 * 299.99332 * 1 2 3 30 30 H 1.08999 * 109.47538 * 60.00229 * 1 2 3 31 31 H 1.08997 * 109.47357 * 239.99947 * 2 1 3 32 32 H 1.09000 * 109.47022 * 119.99668 * 2 1 3 33 33 H 1.08002 * 126.91700 * 0.04093 * 4 3 2 34 34 H 1.09003 * 109.46996 * 334.71340 * 6 5 4 35 35 H 1.09003 * 109.47064 * 214.71368 * 6 5 4 36 36 H 1.00901 * 110.99813 * 56.04085 * 7 6 5 37 37 H 1.09003 * 109.47359 * 60.00055 * 10 8 7 38 38 H 1.09001 * 109.47098 * 179.97438 * 10 8 7 39 39 H 1.09005 * 109.46738 * 299.99704 * 10 8 7 40 40 H 1.08992 * 109.47648 * 296.70173 * 11 8 7 41 41 H 1.09001 * 109.47211 * 176.69757 * 11 8 7 42 42 H 1.09004 * 109.47169 * 265.08944 * 13 12 11 43 43 H 1.08993 * 109.47584 * 25.08868 * 13 12 11 44 44 H 1.09000 * 109.47708 * 145.09608 * 13 12 11 45 45 H 1.08997 * 109.46898 * 300.00509 * 16 14 12 46 46 H 1.09003 * 109.47090 * 59.99928 * 16 14 12 47 47 H 0.96995 * 120.00311 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8798 1.9176 0.8950 5 6 3.0529 3.2081 0.5252 6 6 3.9215 4.2330 1.2079 7 7 5.2370 4.2726 0.5555 8 6 6.1125 5.2634 1.1956 9 1 5.5390 6.1621 1.4228 10 6 6.6812 4.6803 2.4908 11 6 7.2607 5.6171 0.2483 12 7 6.7142 6.1017 -1.0217 13 6 6.3178 7.5051 -1.1606 14 6 6.5763 5.2563 -2.0623 15 8 6.9042 4.0943 -1.9472 16 6 6.0084 5.7533 -3.3667 17 16 5.9500 4.3913 -4.5573 18 6 5.2671 5.2300 -5.9483 19 1 5.0250 6.2803 -5.8803 20 6 5.0414 4.5410 -7.1319 21 7 5.3380 3.2612 -7.2154 22 14 4.3181 5.4302 -8.6070 23 1 5.2184 6.5420 -9.0050 24 1 4.1759 4.4785 -9.7379 25 1 2.9843 5.9769 -8.2501 26 7 2.3056 3.3931 -0.5688 27 7 1.7052 2.2919 -0.8541 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.3357 1.4174 1.7367 34 1 4.0442 3.9644 2.2571 35 1 3.4509 5.2136 1.1365 36 1 5.1453 4.4561 -0.4325 37 1 7.2548 3.7816 2.2636 38 1 7.3312 5.4153 2.9655 39 1 5.8632 4.4284 3.1657 40 1 7.8688 4.7308 0.0675 41 1 7.8771 6.3949 0.6990 42 1 5.2505 7.6026 -0.9616 43 1 6.8770 8.1128 -0.4492 44 1 6.5307 7.8443 -2.1744 45 1 5.0009 6.1353 -3.2023 46 1 6.6401 6.5512 -3.7575 47 1 5.1806 2.7798 -8.0427 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755577635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:33 Heat of formation + Delta-G solvation = 69.218948 kcal Electronic energy + Delta-G solvation = -27800.177734 eV Core-core repulsion = 23954.003651 eV Total energy + Delta-G solvation = -3846.174083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.12776 -39.71577 -37.08966 -35.59994 -34.79930 -32.45135 -32.34131 -30.90645 -29.98049 -29.19476 -27.25578 -25.76442 -25.43107 -24.85129 -24.72997 -21.80142 -20.76644 -20.54881 -19.14751 -17.60468 -17.39612 -16.59972 -16.42905 -16.35345 -15.86189 -15.28114 -14.95785 -14.72858 -14.67879 -14.52060 -14.01937 -13.65516 -13.33631 -13.12599 -12.94183 -12.89232 -12.66830 -12.54050 -12.48326 -12.40532 -12.06385 -11.94245 -11.84869 -11.65609 -11.51280 -11.26049 -11.07409 -10.96959 -10.95447 -10.69291 -10.61568 -9.98321 -9.73249 -9.26696 -9.14003 -8.97376 -8.49548 -8.31431 -8.13161 -6.39205 -6.13037 -3.82229 1.70205 2.36334 2.63884 3.01035 3.12275 3.29609 3.31921 3.35032 3.69335 4.16965 4.28531 4.30931 4.49572 4.56028 4.79602 4.81863 4.86921 4.96494 5.03397 5.10728 5.21930 5.23782 5.24151 5.26475 5.33549 5.40321 5.41084 5.49622 5.58939 5.64855 5.71051 5.75048 5.75497 5.78900 5.96777 5.98350 6.00218 6.16293 6.22915 6.23778 6.64728 6.68707 7.09090 7.48256 7.57871 7.67582 8.43415 8.63149 8.67024 9.32182 10.94424 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007410 B = 0.003977 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3777.831715 B = 7037.965454 C =10069.465880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.294 5.294 4 C -0.035 4.035 5 C -0.020 4.020 6 C 0.148 3.852 7 N -0.675 5.675 8 C 0.069 3.931 9 H 0.041 0.959 10 C -0.138 4.138 11 C 0.114 3.886 12 N -0.630 5.630 13 C 0.081 3.919 14 C 0.528 3.472 15 O -0.501 6.501 16 C -0.151 4.151 17 S -0.058 6.058 18 C -0.533 4.533 19 H 0.071 0.929 20 C 0.074 3.926 21 N -0.869 5.869 22 Si 0.917 3.083 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 N -0.257 5.257 27 N -0.076 5.076 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.187 0.813 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.357 0.643 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.544 0.362 23.370 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.088 5.088 4 C -0.186 4.186 5 C -0.159 4.159 6 C 0.018 3.982 7 N -0.311 5.311 8 C -0.043 4.043 9 H 0.059 0.941 10 C -0.197 4.197 11 C -0.009 4.009 12 N -0.368 5.368 13 C -0.063 4.063 14 C 0.316 3.684 15 O -0.373 6.373 16 C -0.302 4.302 17 S 0.169 5.831 18 C -0.682 4.682 19 H 0.089 0.911 20 C -0.135 4.135 21 N -0.504 5.504 22 Si 0.743 3.257 23 H -0.200 1.200 24 H -0.209 1.209 25 H -0.199 1.199 26 N -0.124 5.124 27 N -0.056 5.056 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.204 0.796 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.179 0.821 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.632 -1.757 22.483 22.842 hybrid contribution -0.690 2.364 -0.459 2.505 sum -4.322 0.607 22.024 22.452 Atomic orbital electron populations 1.22074 0.92799 1.03567 1.04011 1.22077 0.96797 0.76728 1.05325 1.47455 1.30573 1.11997 1.18767 1.23277 0.99941 0.95363 1.00065 1.21786 1.02311 0.94822 0.96951 1.20055 0.87070 0.94250 0.96872 1.60530 1.10665 1.51047 1.08887 1.21901 0.94533 0.92982 0.94837 0.94148 1.21754 1.00797 1.01421 0.95695 1.21639 0.95260 1.01023 0.83020 1.47957 1.66005 1.10416 1.12390 1.21751 1.00008 0.81479 1.03013 1.20383 0.77709 0.85719 0.84544 1.90739 1.47492 1.16694 1.82396 1.23564 1.03108 1.06467 0.97030 1.85370 1.83150 1.09788 1.04775 1.22824 1.48723 0.98306 0.98320 0.91073 1.24964 0.95257 0.94927 0.98313 1.70013 1.45282 1.07817 1.27288 0.86255 0.79545 0.79147 0.80750 1.19980 1.20853 1.19907 1.75112 1.08571 1.16273 1.12487 1.78316 1.20765 0.92684 1.13826 0.89991 0.91935 0.90488 0.88076 0.87826 0.79587 0.89649 0.93911 0.82079 0.91547 0.92564 0.92657 0.88598 0.90443 0.92956 0.91266 0.90817 0.89341 0.89424 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.04 37.16 0.37 -0.81 16 2 C 0.11 0.90 7.18 -4.04 -0.03 0.87 16 3 N -0.29 -3.83 3.44 -61.26 -0.21 -4.04 16 4 C -0.03 -0.43 11.50 -17.04 -0.20 -0.62 16 5 C -0.02 -0.31 6.76 -82.78 -0.56 -0.86 16 6 C 0.15 1.87 6.05 -4.98 -0.03 1.84 16 7 N -0.67 -9.77 6.27 -107.99 -0.68 -10.45 16 8 C 0.07 0.77 2.92 -67.71 -0.20 0.57 16 9 H 0.04 0.42 7.91 -51.93 -0.41 0.01 16 10 C -0.14 -1.21 9.34 37.16 0.35 -0.87 16 11 C 0.11 1.39 5.22 -4.04 -0.02 1.36 16 12 N -0.63 -9.09 2.52 -181.58 -0.46 -9.55 16 13 C 0.08 0.89 10.19 59.85 0.61 1.50 16 14 C 0.53 10.36 6.13 -10.98 -0.07 10.30 16 15 O -0.50 -11.62 14.66 5.55 0.08 -11.54 16 16 C -0.15 -3.25 4.78 36.01 0.17 -3.08 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.53 -15.80 9.50 30.94 0.29 -15.50 16 19 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 20 C 0.07 2.20 5.49 -17.43 -0.10 2.10 16 21 N -0.87 -27.04 13.22 55.49 0.73 -26.30 16 22 Si 0.92 22.17 29.55 -169.99 -5.02 17.15 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 26 N -0.26 -4.80 12.41 33.29 0.41 -4.38 16 27 N -0.08 -1.33 12.91 60.35 0.78 -0.56 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 0.48 8.07 -51.93 -0.42 0.06 16 33 H 0.19 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.09 0.83 7.05 -51.93 -0.37 0.46 16 35 H 0.04 0.54 8.07 -51.93 -0.42 0.12 16 36 H 0.36 6.45 5.47 -39.29 -0.21 6.24 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.44 7.08 -51.93 -0.37 0.07 16 40 H 0.10 1.39 7.24 -51.93 -0.38 1.01 16 41 H 0.08 0.70 7.96 -51.93 -0.41 0.29 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.55 7.90 -51.93 -0.41 0.14 16 44 H 0.07 0.82 6.65 -51.93 -0.35 0.48 16 45 H 0.09 1.83 8.11 -51.92 -0.42 1.41 16 46 H 0.09 1.74 7.40 -51.92 -0.38 1.35 16 47 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 402.03 15.07 6.06 6.06 Total: -1.00 -39.00 402.03 -7.39 -46.39 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.47 Total: 4.27 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 0.60 Total: -3.21 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.58 Total: -55.28 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -39.00 -7.39 -46.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755577635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.605 kcal (2) G-P(sol) polarization free energy of solvation -38.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds