Wall clock time and date at job start Sat Apr 11 2020 06:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46614 * 2 1 4 4 C 1.35316 * 125.86593 * 125.29511 * 3 2 1 5 5 C 1.35352 * 106.17450 * 180.18272 * 4 3 2 6 6 C 1.50701 * 126.75065 * 179.85337 * 5 4 3 7 7 N 1.46896 * 109.47242 * 94.71457 * 6 5 4 8 8 C 1.46897 * 111.00113 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47406 * 318.68161 * 8 7 6 10 10 C 1.53003 * 109.46969 * 78.67910 * 8 7 6 11 11 C 1.53001 * 109.47376 * 198.67376 * 8 7 6 12 12 N 1.46501 * 109.46330 * 56.70224 * 11 8 7 13 13 C 1.46497 * 120.00180 * 83.70337 * 12 11 8 14 14 C 1.34777 * 120.00028 * 263.69485 * 12 11 8 15 15 O 1.21285 * 120.00002 * 0.02562 * 14 12 11 16 16 C 1.50702 * 120.00267 * 179.72859 * 14 12 11 17 17 S 1.80993 * 109.47185 * 180.02562 * 16 14 12 18 18 C 1.76205 * 99.99818 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00023 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99825 * 179.97438 * 18 17 16 21 21 N 1.31638 * 120.00362 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00136 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46887 * 59.99634 * 22 20 18 24 24 H 1.48494 * 109.47284 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46820 * 299.99972 * 22 20 18 26 26 N 1.33771 * 106.49457 * 359.59664 * 5 4 3 27 27 N 1.28629 * 108.88572 * 0.25450 * 26 5 4 28 28 H 1.09006 * 109.46705 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47077 * 299.99332 * 1 2 3 30 30 H 1.08999 * 109.47538 * 60.00229 * 1 2 3 31 31 H 1.08997 * 109.47357 * 239.99947 * 2 1 3 32 32 H 1.09000 * 109.47022 * 119.99668 * 2 1 3 33 33 H 1.08002 * 126.91700 * 0.04093 * 4 3 2 34 34 H 1.09003 * 109.46996 * 334.71340 * 6 5 4 35 35 H 1.09003 * 109.47064 * 214.71368 * 6 5 4 36 36 H 1.00901 * 110.99813 * 56.04085 * 7 6 5 37 37 H 1.09003 * 109.47359 * 60.00055 * 10 8 7 38 38 H 1.09001 * 109.47098 * 179.97438 * 10 8 7 39 39 H 1.09005 * 109.46738 * 299.99704 * 10 8 7 40 40 H 1.08992 * 109.47648 * 296.70173 * 11 8 7 41 41 H 1.09001 * 109.47211 * 176.69757 * 11 8 7 42 42 H 1.09004 * 109.47169 * 265.08944 * 13 12 11 43 43 H 1.08993 * 109.47584 * 25.08868 * 13 12 11 44 44 H 1.09000 * 109.47708 * 145.09608 * 13 12 11 45 45 H 1.08997 * 109.46898 * 300.00509 * 16 14 12 46 46 H 1.09003 * 109.47090 * 59.99928 * 16 14 12 47 47 H 0.96995 * 120.00311 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8798 1.9176 0.8950 5 6 3.0529 3.2081 0.5252 6 6 3.9215 4.2330 1.2079 7 7 5.2370 4.2726 0.5555 8 6 6.1125 5.2634 1.1956 9 1 5.5390 6.1621 1.4228 10 6 6.6812 4.6803 2.4908 11 6 7.2607 5.6171 0.2483 12 7 6.7142 6.1017 -1.0217 13 6 6.3178 7.5051 -1.1606 14 6 6.5763 5.2563 -2.0623 15 8 6.9042 4.0943 -1.9472 16 6 6.0084 5.7533 -3.3667 17 16 5.9500 4.3913 -4.5573 18 6 5.2671 5.2300 -5.9483 19 1 5.0250 6.2803 -5.8803 20 6 5.0414 4.5410 -7.1319 21 7 5.3380 3.2612 -7.2154 22 14 4.3181 5.4302 -8.6070 23 1 5.2184 6.5420 -9.0050 24 1 4.1759 4.4785 -9.7379 25 1 2.9843 5.9769 -8.2501 26 7 2.3056 3.3931 -0.5688 27 7 1.7052 2.2919 -0.8541 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.3357 1.4174 1.7367 34 1 4.0442 3.9644 2.2571 35 1 3.4509 5.2136 1.1365 36 1 5.1453 4.4561 -0.4325 37 1 7.2548 3.7816 2.2636 38 1 7.3312 5.4153 2.9655 39 1 5.8632 4.4284 3.1657 40 1 7.8688 4.7308 0.0675 41 1 7.8771 6.3949 0.6990 42 1 5.2505 7.6026 -0.9616 43 1 6.8770 8.1128 -0.4492 44 1 6.5307 7.8443 -2.1744 45 1 5.0009 6.1353 -3.2023 46 1 6.6401 6.5512 -3.7575 47 1 5.1806 2.7798 -8.0427 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755577635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:32 Heat of formation + Delta-G solvation = 39.536350 kcal Electronic energy + Delta-G solvation = -27801.464868 eV Core-core repulsion = 23954.003651 eV Total energy + Delta-G solvation = -3847.461217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.19048 -41.05234 -38.20660 -36.58375 -35.93143 -34.59846 -33.45785 -31.78401 -31.25648 -30.41546 -28.25417 -27.70684 -26.70493 -26.01841 -25.54288 -22.80650 -21.76709 -21.50435 -20.56343 -19.55475 -18.32436 -18.02979 -17.49671 -17.40409 -17.11327 -16.89523 -16.36359 -15.99629 -15.89305 -15.74033 -15.31837 -14.74943 -14.57661 -14.47354 -14.31629 -13.84110 -13.81712 -13.47902 -13.45644 -13.29624 -13.17989 -13.10276 -12.98117 -12.88706 -12.69626 -12.60937 -12.47921 -12.42380 -12.24893 -11.98145 -11.74078 -11.63466 -11.14354 -11.02059 -10.83850 -10.28694 -10.21053 -9.67544 -9.31679 -8.66837 -8.35772 -6.13321 0.69309 1.24416 1.41431 1.43414 1.47588 1.53917 1.57179 1.60423 2.14290 2.26660 2.97972 3.23388 3.29538 3.47046 3.66829 3.74949 3.89881 3.94853 3.99612 4.14971 4.17549 4.24819 4.26900 4.33505 4.42659 4.46080 4.49107 4.56211 4.56875 4.67242 4.72710 4.75793 4.90037 4.93071 4.99737 5.05370 5.11666 5.14507 5.24446 5.38844 5.45345 5.63376 5.74225 6.15709 6.17663 6.21883 6.34200 7.04923 7.18230 7.55335 8.73508 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007410 B = 0.003977 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3777.831715 B = 7037.965454 C =10069.465880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.287 5.287 4 C -0.020 4.020 5 C -0.044 4.044 6 C 0.153 3.847 7 N -0.692 5.692 8 C 0.069 3.931 9 H 0.056 0.944 10 C -0.131 4.131 11 C 0.111 3.889 12 N -0.615 5.615 13 C 0.072 3.928 14 C 0.529 3.471 15 O -0.547 6.547 16 C -0.125 4.125 17 S -0.147 6.147 18 C -0.548 4.548 19 H 0.079 0.921 20 C 0.015 3.985 21 N -0.912 5.912 22 Si 0.997 3.003 23 H -0.258 1.258 24 H -0.276 1.276 25 H -0.265 1.265 26 N -0.311 5.311 27 N -0.126 5.126 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.098 0.902 32 H 0.149 0.851 33 H 0.234 0.766 34 H 0.120 0.880 35 H 0.037 0.963 36 H 0.331 0.669 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.120 0.880 42 H 0.057 0.943 43 H 0.110 0.890 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.106 0.894 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.386 1.836 25.909 26.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.020 4.020 3 N -0.081 5.081 4 C -0.173 4.173 5 C -0.184 4.184 6 C 0.023 3.977 7 N -0.326 5.326 8 C -0.041 4.041 9 H 0.074 0.926 10 C -0.189 4.189 11 C -0.011 4.011 12 N -0.350 5.350 13 C -0.070 4.070 14 C 0.316 3.684 15 O -0.424 6.424 16 C -0.276 4.276 17 S 0.080 5.920 18 C -0.696 4.696 19 H 0.098 0.902 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.818 3.182 23 H -0.183 1.183 24 H -0.201 1.201 25 H -0.190 1.190 26 N -0.177 5.177 27 N -0.105 5.105 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.166 0.834 33 H 0.251 0.749 34 H 0.138 0.862 35 H 0.055 0.945 36 H 0.151 0.849 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.138 0.862 42 H 0.076 0.924 43 H 0.129 0.871 44 H 0.089 0.911 45 H 0.112 0.888 46 H 0.124 0.876 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.487 -0.243 25.064 25.306 hybrid contribution -0.703 1.902 -1.068 2.292 sum -4.190 1.659 23.996 24.415 Atomic orbital electron populations 1.22041 0.92174 1.05031 1.02562 1.22589 0.97446 0.74603 1.07371 1.47895 1.29748 1.12836 1.17666 1.24005 0.98425 0.94576 1.00252 1.22375 1.02630 0.96792 0.96564 1.20184 0.85925 0.93550 0.98043 1.60621 1.11935 1.52512 1.07542 1.22039 0.93709 0.93175 0.95223 0.92570 1.21717 1.01350 1.01351 0.94479 1.21911 0.95868 1.01355 0.82008 1.47905 1.64252 1.11113 1.11734 1.22056 1.01103 0.79570 1.04254 1.20018 0.77691 0.85638 0.85013 1.90716 1.49874 1.18640 1.83158 1.23373 1.04117 1.03648 0.96499 1.85509 1.83527 1.15212 1.07746 1.23163 1.48982 0.98692 0.98757 0.90248 1.26124 0.95337 0.95740 1.01808 1.70184 1.46490 1.09780 1.28344 0.85030 0.78914 0.78074 0.76146 1.18273 1.20069 1.18986 1.75015 1.10387 1.17656 1.14680 1.78205 1.22644 0.93637 1.15993 0.86981 0.91818 0.93451 0.88400 0.83354 0.74926 0.86193 0.94491 0.84949 0.93070 0.90019 0.91397 0.91365 0.86185 0.92403 0.87112 0.91111 0.88809 0.87582 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 10.04 71.98 0.72 -1.45 16 2 C 0.10 1.48 7.18 86.38 0.62 2.10 16 3 N -0.29 -7.48 3.44 -347.73 -1.20 -8.67 16 4 C -0.02 -0.46 11.50 83.49 0.96 0.50 16 5 C -0.04 -1.33 6.76 41.60 0.28 -1.04 16 6 C 0.15 3.70 6.05 85.56 0.52 4.22 16 7 N -0.69 -19.61 6.27 -495.57 -3.11 -22.72 16 8 C 0.07 1.38 2.92 44.92 0.13 1.51 16 9 H 0.06 0.97 7.91 -2.39 -0.02 0.95 16 10 C -0.13 -1.87 9.34 71.98 0.67 -1.19 16 11 C 0.11 2.47 5.22 86.38 0.45 2.92 16 12 N -0.62 -16.96 2.52 -846.77 -2.13 -19.09 16 13 C 0.07 1.38 10.19 127.77 1.30 2.68 16 14 C 0.53 21.18 6.13 87.66 0.54 21.71 16 15 O -0.55 -26.62 14.66 -3.05 -0.04 -26.66 16 16 C -0.13 -5.52 4.78 71.24 0.34 -5.18 16 17 S -0.15 -8.76 20.57 -56.49 -1.16 -9.92 16 18 C -0.55 -33.31 9.50 67.95 0.65 -32.66 16 19 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16 20 C 0.01 0.87 5.49 84.86 0.47 1.34 16 21 N -0.91 -58.60 13.22 21.65 0.29 -58.32 16 22 Si 1.00 45.90 29.55 68.60 2.03 47.93 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 N -0.31 -12.26 12.41 -48.60 -0.60 -12.86 16 27 N -0.13 -4.66 12.91 37.02 0.48 -4.18 16 28 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.93 8.12 -2.39 -0.02 0.91 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.15 0.88 8.07 -2.39 -0.02 0.86 16 33 H 0.23 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.12 1.96 7.05 -2.39 -0.02 1.95 16 35 H 0.04 0.91 8.07 -2.39 -0.02 0.89 16 36 H 0.33 12.29 5.47 -89.69 -0.49 11.80 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.81 7.08 -2.38 -0.02 0.79 16 40 H 0.07 1.95 7.24 -2.39 -0.02 1.93 16 41 H 0.12 1.66 7.96 -2.39 -0.02 1.64 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.11 1.25 7.90 -2.39 -0.02 1.23 16 44 H 0.07 1.42 6.65 -2.39 -0.02 1.41 16 45 H 0.09 3.99 8.11 -2.40 -0.02 3.97 16 46 H 0.11 4.21 7.40 -2.39 -0.02 4.20 16 47 H 0.27 16.16 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -93.66 402.03 2.67 -90.99 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.48 Total: 28.06 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 7.65 Total: -4.56 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -6.28 Total: -125.84 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.04 Total: -26.66 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -93.66 2.67 -90.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755577635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.529 kcal (2) G-P(sol) polarization free energy of solvation -93.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds