Wall clock time and date at job start Sat Apr 11 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00088 * 2 1 4 4 H 1.48498 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47068 * 300.00022 * 3 2 1 6 6 H 1.48501 * 109.46760 * 60.00014 * 3 2 1 7 7 C 1.38819 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99584 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99988 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47021 * 324.99868 * 10 9 7 12 12 C 1.53005 * 109.47414 * 84.99756 * 10 9 7 13 13 C 1.52997 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46817 * 300.00239 * 13 12 10 15 15 C 1.53000 * 109.47233 * 60.00194 * 14 13 12 16 16 H 1.09002 * 109.47398 * 59.99826 * 15 14 13 17 17 N 1.46500 * 109.47023 * 179.97438 * 15 14 13 18 18 C 1.34779 * 119.99793 * 274.99565 * 17 15 14 19 19 O 1.21279 * 120.00185 * 0.02562 * 18 17 15 20 20 C 1.50702 * 119.99614 * 179.97438 * 18 17 15 21 21 N 1.46500 * 109.46774 * 180.02562 * 20 18 17 22 22 C 1.36838 * 125.06312 * 264.69461 * 21 20 18 23 23 C 1.34236 * 109.93117 * 179.87620 * 22 21 20 24 24 C 1.46492 * 106.99415 * 0.37788 * 23 22 21 25 25 C 1.39632 * 134.02751 * 179.78763 * 24 23 22 26 26 C 1.36633 * 119.76209 * 179.97438 * 25 24 23 27 27 C 1.38825 * 120.52728 * 0.02562 * 26 25 24 28 28 C 1.37750 * 120.66978 * 0.02562 * 27 26 25 29 29 C 1.37680 * 125.06495 * 85.00378 * 21 20 18 30 30 C 1.52997 * 109.47060 * 299.99657 * 15 14 13 31 31 H 0.97001 * 119.99978 * 0.02562 * 1 2 3 32 32 H 0.96994 * 119.99890 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.46812 * 300.00401 * 12 10 9 34 34 H 1.09002 * 109.46935 * 60.00059 * 12 10 9 35 35 H 1.09002 * 109.46695 * 59.99734 * 13 12 10 36 36 H 1.08993 * 109.47194 * 179.97438 * 13 12 10 37 37 H 1.08992 * 109.47063 * 299.99823 * 14 13 12 38 38 H 1.09004 * 109.46733 * 179.97438 * 14 13 12 39 39 H 0.97004 * 120.00223 * 94.99655 * 17 15 14 40 40 H 1.09002 * 109.47423 * 300.00169 * 20 18 17 41 41 H 1.09002 * 109.46795 * 60.00420 * 20 18 17 42 42 H 1.08001 * 125.03028 * 0.02562 * 22 21 20 43 43 H 1.07993 * 126.50349 * 180.14588 * 23 22 21 44 44 H 1.07999 * 120.11879 * 359.96341 * 25 24 23 45 45 H 1.07996 * 119.73105 * 180.02562 * 26 25 24 46 46 H 1.07994 * 119.66865 * 180.02562 * 27 26 25 47 47 H 1.07999 * 120.11558 * 179.97438 * 28 27 26 48 48 H 1.08996 * 109.47853 * 180.02562 * 30 15 14 49 49 H 1.09002 * 109.47153 * 300.00319 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5506 -0.5900 12 6 2.4220 -4.0357 1.4365 13 6 3.1875 -5.3604 1.4364 14 6 2.3107 -6.4560 0.8266 15 6 1.9469 -6.0772 -0.6104 16 1 2.8576 -5.9705 -1.1998 17 7 1.1079 -7.1265 -1.1945 18 6 1.6785 -8.2081 -1.7612 19 8 2.8865 -8.3128 -1.7872 20 6 0.8154 -9.2878 -2.3616 21 7 1.6676 -10.3465 -2.9085 22 6 2.0649 -10.4398 -4.2146 23 6 2.8397 -11.5232 -4.3810 24 6 2.9399 -12.1823 -3.0765 25 6 3.5883 -13.3302 -2.6165 26 6 3.4842 -13.6871 -1.3017 27 6 2.7383 -12.9178 -0.4191 28 6 2.0898 -11.7821 -0.8519 29 6 2.1833 -11.3991 -2.1862 30 6 1.1814 -4.7525 -0.6104 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 0.0002 33 1 3.0469 -3.2553 1.8708 34 1 1.5113 -4.1419 2.0260 35 1 4.0982 -5.2537 0.8470 36 1 3.4471 -5.6300 2.4601 37 1 1.4001 -6.5626 1.4159 38 1 2.8563 -7.3996 0.8261 39 1 0.1417 -7.0429 -1.1734 40 1 0.1672 -9.7053 -1.5910 41 1 0.2052 -8.8637 -3.1590 42 1 1.7968 -9.7433 -4.9953 43 1 3.2986 -11.8494 -5.3025 44 1 4.1698 -13.9339 -3.2975 45 1 3.9862 -14.5748 -0.9464 46 1 2.6658 -13.2125 0.6173 47 1 1.5116 -11.1905 -0.1576 48 1 0.9217 -4.4827 -1.6340 49 1 0.2707 -4.8591 -0.0210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981529574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:09 Heat of formation + Delta-G solvation = 8.421192 kcal Electronic energy + Delta-G solvation = -28881.825609 eV Core-core repulsion = 25001.111529 eV Total energy + Delta-G solvation = -3880.714080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.32985 -40.95499 -39.30903 -37.82122 -36.26063 -34.89083 -33.88011 -32.95360 -31.59226 -30.65652 -29.76955 -29.46217 -27.63459 -25.72344 -23.77998 -23.35226 -22.94822 -22.39515 -21.62000 -21.17461 -20.73840 -19.25079 -18.36857 -18.19605 -17.37846 -17.25287 -16.48266 -16.27380 -16.25719 -15.92526 -15.55972 -15.26030 -15.13851 -15.05103 -14.84333 -14.68279 -14.44030 -14.21161 -13.93767 -13.67376 -13.47144 -13.43743 -13.05746 -12.92608 -12.84849 -12.49935 -12.46958 -12.28389 -12.15774 -12.04921 -11.99652 -11.73366 -11.68315 -11.53868 -11.42062 -11.00422 -10.89461 -10.52008 -10.11123 -9.07235 -9.01214 -8.56115 -7.95735 -5.23228 0.24484 0.71802 1.45999 1.46586 1.50564 1.56068 1.57483 1.90484 2.26790 2.55300 3.03644 3.37638 3.58745 3.65590 3.77231 3.79103 3.86379 3.99114 4.02038 4.13884 4.18924 4.23870 4.28401 4.31242 4.41451 4.50269 4.55145 4.57759 4.61084 4.64370 4.73916 4.80203 4.95579 4.99447 5.07669 5.08456 5.13637 5.19000 5.19416 5.32350 5.43449 5.48343 5.51878 5.58594 5.63012 5.72487 5.87357 5.89981 6.27359 6.31665 6.32512 6.54823 7.18359 7.33916 8.09324 8.33255 9.27603 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.024167 B = 0.001982 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.305270 B =14125.685320 C =14631.586042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.176 3.824 11 H 0.033 0.967 12 C -0.126 4.126 13 C -0.107 4.107 14 C -0.114 4.114 15 C 0.161 3.839 16 H 0.062 0.938 17 N -0.707 5.707 18 C 0.491 3.509 19 O -0.572 6.572 20 C 0.093 3.907 21 N -0.474 5.474 22 C 0.055 3.945 23 C -0.224 4.224 24 C -0.138 4.138 25 C -0.087 4.087 26 C -0.155 4.155 27 C -0.109 4.109 28 C -0.141 4.141 29 C 0.084 3.916 30 C -0.113 4.113 31 H 0.251 0.749 32 H 0.375 0.625 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.418 0.582 40 H 0.141 0.859 41 H 0.158 0.842 42 H 0.195 0.805 43 H 0.161 0.839 44 H 0.135 0.865 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.125 0.875 48 H 0.063 0.937 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 -28.303 -4.400 28.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.067 3.933 11 H 0.051 0.949 12 C -0.166 4.166 13 C -0.146 4.146 14 C -0.153 4.153 15 C 0.055 3.945 16 H 0.081 0.919 17 N -0.359 5.359 18 C 0.277 3.723 19 O -0.451 6.451 20 C -0.032 4.032 21 N -0.157 5.157 22 C -0.069 4.069 23 C -0.248 4.248 24 C -0.143 4.143 25 C -0.106 4.106 26 C -0.174 4.174 27 C -0.128 4.128 28 C -0.162 4.162 29 C -0.022 4.022 30 C -0.152 4.152 31 H 0.059 0.941 32 H 0.207 0.793 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.256 0.744 40 H 0.159 0.841 41 H 0.176 0.824 42 H 0.212 0.788 43 H 0.179 0.821 44 H 0.153 0.847 45 H 0.161 0.839 46 H 0.162 0.838 47 H 0.142 0.858 48 H 0.082 0.918 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.553 -27.989 -4.352 28.330 hybrid contribution -0.219 1.581 0.094 1.599 sum 0.334 -26.407 -4.257 26.750 Atomic orbital electron populations 1.69799 1.06353 1.25872 1.59747 1.25484 0.96392 1.00790 1.04040 0.85159 0.78204 0.80279 0.76667 1.19400 1.22057 1.22083 1.19596 0.91254 0.85338 1.40597 0.91143 1.42558 1.05470 1.00729 1.88680 1.20306 0.93854 0.84914 0.94195 0.94928 1.22097 0.99665 0.96220 0.98661 1.21411 0.98037 0.93979 1.01182 1.21784 1.00449 0.97966 0.95079 1.20695 0.93661 0.85976 0.94130 0.91938 1.45917 1.11291 1.20096 1.58632 1.21539 0.89156 0.83606 0.77999 1.90773 1.16725 1.78592 1.58975 1.21865 0.91612 0.86327 1.03434 1.43558 1.43978 1.20472 1.07697 1.22316 0.99062 0.99858 0.85659 1.21967 1.06999 0.98708 0.97155 1.19656 1.02150 0.97879 0.94619 1.20568 0.98488 0.95044 0.96462 1.20946 1.01582 1.01587 0.93266 1.21134 0.96882 0.94115 1.00650 1.20263 1.04444 0.99442 0.92027 1.18516 0.99273 0.90304 0.94059 1.21855 0.99098 0.92715 1.01486 0.94057 0.79322 0.94174 0.92546 0.92807 0.90712 0.90387 0.92549 0.74434 0.84115 0.82442 0.78803 0.82130 0.84714 0.83903 0.83761 0.85754 0.91833 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.97 13.06 21.65 0.28 -57.69 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.97 45.96 29.55 68.60 2.03 47.98 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.24 -12.93 9.93 84.04 0.83 -12.09 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.73 -35.74 5.12 -322.93 -1.65 -37.39 16 10 C 0.18 6.65 2.77 44.99 0.12 6.77 16 11 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 12 C -0.13 -4.28 5.50 30.60 0.17 -4.12 16 13 C -0.11 -2.91 5.92 30.59 0.18 -2.73 16 14 C -0.11 -2.76 5.49 30.60 0.17 -2.59 16 15 C 0.16 4.02 2.45 44.99 0.11 4.13 16 16 H 0.06 1.92 7.58 -2.39 -0.02 1.90 16 17 N -0.71 -12.75 5.08 -442.53 -2.25 -15.00 16 18 C 0.49 10.24 7.86 87.66 0.69 10.93 16 19 O -0.57 -18.32 16.08 -3.03 -0.05 -18.37 16 20 C 0.09 1.17 6.48 85.63 0.56 1.73 16 21 N -0.47 -9.26 2.27 -519.98 -1.18 -10.44 16 22 C 0.06 1.00 11.27 83.00 0.94 1.94 16 23 C -0.22 -4.54 11.08 23.51 0.26 -4.28 16 24 C -0.14 -3.28 6.37 -20.20 -0.13 -3.41 16 25 C -0.09 -1.77 10.05 22.23 0.22 -1.55 16 26 C -0.15 -2.78 9.97 22.03 0.22 -2.56 16 27 C -0.11 -2.00 10.01 22.29 0.22 -1.77 16 28 C -0.14 -2.96 10.00 22.37 0.22 -2.74 16 29 C 0.08 1.97 6.80 39.03 0.27 2.23 16 30 C -0.11 -3.24 4.86 30.59 0.15 -3.09 16 31 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.37 19.27 7.80 -92.71 -0.72 18.55 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.42 4.62 8.60 -92.71 -0.80 3.82 16 40 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.16 0.82 8.12 -2.39 -0.02 0.80 16 42 H 0.20 2.16 8.06 -2.91 -0.02 2.13 16 43 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 44 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 45 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 46 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 47 H 0.12 2.18 8.06 -2.91 -0.02 2.16 16 48 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -76.91 402.76 2.29 -74.63 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -0.57 Total: 33.25 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 5.67 Total: -16.97 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -4.80 Total: -120.52 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.05 Total: -18.37 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -76.91 2.29 -74.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981529574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.048 kcal (2) G-P(sol) polarization free energy of solvation -76.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds