Wall clock time and date at job start Sat Apr 11 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00000 * 2 1 4 4 H 1.48499 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47697 * 300.00827 * 3 2 1 6 6 H 1.48510 * 109.47103 * 60.00678 * 3 2 1 7 7 C 1.38817 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99896 * 168.83612 * 7 2 1 9 9 N 1.36938 * 119.99745 * 348.56239 * 7 2 1 10 10 C 1.46892 * 120.68697 * 145.29301 * 9 7 2 11 11 C 1.53143 * 109.09844 * 124.66587 * 10 9 7 12 12 C 1.53186 * 109.35420 * 56.43945 * 11 10 9 13 13 C 1.52628 * 109.34774 * 300.94232 * 12 11 10 14 14 C 1.53468 * 113.67149 * 286.00082 * 13 12 11 15 15 N 1.47670 * 85.96445 * 222.10022 * 14 13 12 16 16 C 1.34780 * 134.45202 * 204.28865 * 15 14 13 17 17 O 1.21279 * 119.99690 * 184.85379 * 16 15 14 18 18 C 1.50695 * 119.99888 * 4.85363 * 16 15 14 19 19 C 1.50699 * 115.55225 * 293.33122 * 18 16 15 20 20 C 1.38231 * 119.61678 * 312.59680 * 19 18 16 21 21 C 1.38636 * 119.15912 * 179.74934 * 20 19 18 22 22 C 1.38670 * 118.41730 * 0.51144 * 21 20 19 23 23 C 1.38174 * 119.16935 * 359.72793 * 22 21 20 24 24 N 1.31849 * 119.62252 * 132.86519 * 19 18 16 25 25 C 1.53000 * 117.49857 * 147.66780 * 18 16 15 26 26 C 1.52998 * 117.50329 * 79.00561 * 18 16 15 27 27 C 1.47680 * 91.09226 * 24.28264 * 15 14 13 28 28 C 1.47113 * 120.68815 * 325.01276 * 9 7 2 29 29 H 0.96993 * 120.00465 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.53580 * 244.54722 * 10 9 7 31 31 H 1.08994 * 109.53774 * 4.70469 * 10 9 7 32 32 H 1.08997 * 109.49210 * 176.40787 * 11 10 9 33 33 H 1.09000 * 109.49208 * 296.47748 * 11 10 9 34 34 H 1.09000 * 109.49177 * 60.90719 * 12 11 10 35 35 H 1.09006 * 109.49269 * 180.98045 * 12 11 10 36 36 H 1.09000 * 113.79536 * 336.36049 * 14 13 12 37 37 H 1.09004 * 113.79506 * 107.83878 * 14 13 12 38 38 H 1.08006 * 120.41957 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.78602 * 180.21182 * 21 20 19 40 40 H 1.08006 * 120.41271 * 179.70830 * 22 21 20 41 41 H 1.07996 * 119.62491 * 180.02562 * 23 22 21 42 42 H 1.09006 * 117.49732 * 359.97438 * 25 18 16 43 43 H 1.08995 * 117.50522 * 145.01848 * 25 18 16 44 44 H 1.08993 * 117.50173 * 214.98123 * 26 18 16 45 45 H 1.09007 * 117.49484 * 359.97197 * 26 18 16 46 46 H 1.08993 * 113.79007 * 221.44677 * 27 15 14 47 47 H 1.08999 * 113.89230 * 89.98969 * 27 15 14 48 48 H 1.09001 * 109.64116 * 351.08174 * 28 9 7 49 49 H 1.08999 * 109.63871 * 111.69649 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2127 7 6 2.0103 -1.2022 -0.0005 8 1 3.0749 -1.2109 -0.1816 9 7 1.3460 -2.3764 0.2341 10 6 1.7492 -3.6146 -0.4456 11 6 2.0375 -4.6916 0.6043 12 6 0.8017 -4.8813 1.4894 13 6 0.4571 -3.5578 2.1671 14 6 1.4147 -3.1807 3.3055 15 7 0.2055 -2.7685 4.0461 16 6 -0.0363 -1.9066 5.0537 17 8 -1.1475 -1.8312 5.5336 18 6 1.0741 -1.0367 5.5838 19 6 2.1915 -1.7647 6.2856 20 6 1.8918 -2.7223 7.2363 21 6 2.9271 -3.3899 7.8723 22 6 4.2310 -3.0603 7.5344 23 6 4.4536 -2.0884 6.5778 24 7 3.4437 -1.4771 5.9895 25 6 0.6962 0.3503 6.1076 26 6 1.4407 0.2108 4.7774 27 6 -0.6328 -3.6790 3.2402 28 6 0.2176 -2.4253 1.1768 29 1 -0.4850 0.8399 0.0004 30 1 0.9445 -3.9498 -1.1000 31 1 2.6466 -3.4305 -1.0363 32 1 2.2755 -5.6311 0.1057 33 1 2.8819 -4.3823 1.2202 34 1 -0.0388 -5.2055 0.8759 35 1 1.0104 -5.6351 2.2487 36 1 1.9311 -4.0334 3.7464 37 1 2.0839 -2.3555 3.0620 38 1 0.8641 -2.9501 7.4781 39 1 2.7230 -4.1452 8.6168 40 1 5.0621 -3.5568 8.0132 41 1 5.4661 -1.8262 6.3086 42 1 -0.3557 0.6337 6.0683 43 1 1.2559 0.7364 6.9594 44 1 2.4899 0.5051 4.7546 45 1 0.8789 0.4020 3.8630 46 1 -1.5901 -3.2495 2.9451 47 1 -0.7269 -4.6803 3.6603 48 1 0.1477 -1.4794 1.7139 49 1 -0.7078 -2.6094 0.6312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981768084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:14 Heat of formation + Delta-G solvation = 87.284394 kcal Electronic energy + Delta-G solvation = -31456.632259 eV Core-core repulsion = 27579.337944 eV Total energy + Delta-G solvation = -3877.294315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.83729 -40.03003 -38.43530 -36.19763 -35.60196 -32.91309 -32.48599 -31.14196 -30.38217 -29.77365 -26.46728 -25.87148 -25.33965 -24.49038 -23.62278 -22.31723 -22.09183 -21.93459 -20.43640 -18.77755 -17.86813 -17.40072 -16.70150 -16.32861 -16.19347 -15.71665 -15.35188 -15.11779 -14.75047 -14.46153 -14.05274 -13.96664 -13.63097 -13.53538 -13.33116 -13.17491 -12.96325 -12.73270 -12.55861 -12.17593 -11.96462 -11.80206 -11.63085 -11.32336 -11.21336 -10.92979 -10.80311 -10.65972 -10.52173 -10.44415 -10.26228 -10.13445 -9.95337 -9.94063 -9.73719 -9.48761 -9.45901 -9.31081 -8.90231 -8.49551 -8.28856 -6.57884 -5.80134 -3.30347 0.97406 1.18149 2.80249 3.07380 3.36563 3.45434 3.46684 3.57420 4.03728 4.15062 4.46958 4.56916 4.66826 4.72902 4.83925 4.95733 4.98373 5.08364 5.20664 5.30129 5.32604 5.38892 5.47545 5.57128 5.60189 5.64369 5.72333 5.75677 5.81833 5.86529 5.93877 5.99418 6.00440 6.07503 6.13701 6.20417 6.23403 6.32933 6.39922 6.41649 6.52459 6.56776 6.59434 6.77570 6.85697 6.99521 7.26991 7.57709 7.81426 7.93254 8.06085 8.45829 8.48270 9.20939 9.81929 10.43126 11.28537 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009857 B = 0.004894 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.861247 B = 5720.443551 C = 6522.362901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.014 3.986 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.587 5.587 10 C 0.144 3.856 11 C -0.133 4.133 12 C -0.094 4.094 13 C -0.109 4.109 14 C 0.122 3.878 15 N -0.625 5.625 16 C 0.580 3.420 17 O -0.547 6.547 18 C -0.119 4.119 19 C 0.181 3.819 20 C -0.161 4.161 21 C -0.073 4.073 22 C -0.180 4.180 23 C 0.104 3.896 24 N -0.470 5.470 25 C -0.134 4.134 26 C -0.128 4.128 27 C 0.113 3.887 28 C 0.203 3.797 29 H 0.254 0.746 30 H 0.017 0.983 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.004 -8.372 12.978 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.186 4.186 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.385 4.385 8 H 0.080 0.920 9 N -0.309 5.309 10 C 0.018 3.982 11 C -0.173 4.173 12 C -0.132 4.132 13 C -0.112 4.112 14 C -0.001 4.001 15 N -0.358 5.358 16 C 0.369 3.631 17 O -0.425 6.425 18 C -0.123 4.123 19 C 0.043 3.957 20 C -0.181 4.181 21 C -0.099 4.099 22 C -0.200 4.200 23 C -0.053 4.053 24 N -0.179 5.179 25 C -0.172 4.172 26 C -0.165 4.165 27 C -0.009 4.009 28 C 0.077 3.923 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.174 0.826 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.133 0.867 45 H 0.126 0.874 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.101 0.899 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 5.448 -7.393 12.738 15.704 hybrid contribution 0.322 0.018 0.770 0.835 sum 5.770 -7.375 13.508 16.437 Atomic orbital electron populations 1.69979 1.05284 1.25495 1.53442 1.25200 0.95241 0.98335 0.99832 0.86342 0.79568 0.84201 0.77430 1.20116 1.21683 1.21285 1.19096 0.90764 0.83784 1.44884 0.92041 1.43911 1.36954 1.04401 1.45679 1.20900 0.97693 0.87109 0.92489 1.22017 0.97295 0.99040 0.98911 1.21284 0.98653 0.94949 0.98342 1.22895 0.94081 0.99140 0.95063 1.23188 0.89495 0.99100 0.88288 1.49818 1.12857 1.39491 1.33632 1.18725 0.87587 0.79256 0.77575 1.90663 1.24240 1.69046 1.58574 1.19850 0.95596 0.89952 1.06923 1.19820 0.90500 0.92940 0.92427 1.21914 1.00779 0.97699 0.97742 1.21538 0.92522 0.97867 0.98006 1.22128 0.97626 1.00058 1.00175 1.22767 0.98117 0.92235 0.92201 1.67395 0.99133 1.26330 1.25001 1.23051 1.02308 0.93272 0.98567 1.23097 1.02805 0.95213 0.95406 1.23250 0.96902 0.92586 0.88211 1.20323 0.89676 0.94031 0.88233 0.93617 0.96470 0.92839 0.93072 0.92454 0.91992 0.93260 0.91497 0.88973 0.85011 0.84885 0.84857 0.82573 0.87349 0.88252 0.86663 0.87381 0.90081 0.90587 0.89942 0.95733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.51 11.44 55.49 0.63 -24.87 16 2 C 0.01 0.37 5.01 -17.43 -0.09 0.28 16 3 Si 0.90 21.30 29.57 -169.99 -5.03 16.27 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.26 -6.72 9.53 -15.06 -0.14 -6.86 16 8 H 0.06 1.62 7.85 -52.49 -0.41 1.20 16 9 N -0.59 -13.91 2.97 -172.75 -0.51 -14.43 16 10 C 0.14 2.88 6.46 -3.75 -0.02 2.85 16 11 C -0.13 -2.14 6.01 -26.56 -0.16 -2.30 16 12 C -0.09 -1.43 5.07 -26.83 -0.14 -1.57 16 13 C -0.11 -1.92 0.87 -154.67 -0.13 -2.06 16 14 C 0.12 2.10 7.34 -3.17 -0.02 2.08 16 15 N -0.62 -11.24 3.45 -180.49 -0.62 -11.87 16 16 C 0.58 10.95 6.75 -10.99 -0.07 10.88 16 17 O -0.55 -11.64 17.46 5.56 0.10 -11.54 16 18 C -0.12 -1.98 2.01 -156.82 -0.31 -2.30 16 19 C 0.18 2.71 6.14 -82.59 -0.51 2.20 16 20 C -0.16 -2.12 9.41 -39.44 -0.37 -2.49 16 21 C -0.07 -0.76 10.18 -39.28 -0.40 -1.16 16 22 C -0.18 -1.73 10.11 -39.45 -0.40 -2.12 16 23 C 0.10 1.19 11.18 -17.55 -0.20 0.99 16 24 N -0.47 -6.86 9.37 -9.48 -0.09 -6.95 16 25 C -0.13 -2.02 9.76 -26.69 -0.26 -2.28 16 26 C -0.13 -2.16 9.72 -26.69 -0.26 -2.42 16 27 C 0.11 1.88 7.97 -3.18 -0.03 1.85 16 28 C 0.20 4.59 4.23 -4.05 -0.02 4.58 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.07 1.04 8.07 -51.93 -0.42 0.63 16 37 H 0.09 1.84 8.08 -51.93 -0.42 1.42 16 38 H 0.13 1.75 7.88 -52.48 -0.41 1.34 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 41 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.11 1.66 8.02 -51.93 -0.42 1.24 16 43 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.12 1.90 7.60 -51.93 -0.39 1.50 16 45 H 0.11 2.08 8.14 -51.92 -0.42 1.66 16 46 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 47 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 48 H 0.08 2.13 6.41 -51.93 -0.33 1.80 16 49 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -31.10 398.76 -10.88 -41.98 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.83 Total: 5.24 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -3.53 Total: 0.15 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.59 Total: -58.11 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.10 Total: -11.54 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.10 -10.88 -41.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981768084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.266 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds