Wall clock time and date at job start Sat Apr 11 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48494 * 109.46937 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46792 * 299.99513 * 3 2 1 6 6 H 1.48493 * 109.47409 * 59.99533 * 3 2 1 7 7 C 1.38812 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99800 * 163.30858 * 7 2 1 9 9 N 1.36939 * 119.99981 * 343.31677 * 7 2 1 10 10 C 1.46893 * 120.69936 * 152.80097 * 9 7 2 11 11 C 1.53144 * 109.10930 * 124.61900 * 10 9 7 12 12 C 1.53200 * 109.35551 * 56.51147 * 11 10 9 13 13 C 1.52513 * 109.36126 * 301.10540 * 12 11 10 14 14 C 1.52914 * 114.18555 * 284.26306 * 13 12 11 15 15 N 1.47161 * 87.84107 * 220.43358 * 14 13 12 16 16 C 1.34779 * 135.99661 * 206.62856 * 15 14 13 17 17 O 1.21287 * 119.99585 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00362 * 179.97438 * 16 15 14 19 19 H 1.09003 * 115.54655 * 34.32390 * 18 16 15 20 20 C 1.53067 * 117.51416 * 248.60820 * 18 16 15 21 21 C 1.52992 * 117.50187 * 179.97438 * 18 16 15 22 22 H 1.09000 * 117.49916 * 0.02562 * 21 18 16 23 23 C 1.50696 * 117.50096 * 215.00038 * 21 18 16 24 24 C 1.38681 * 120.41819 * 120.11163 * 23 21 18 25 25 C 1.38627 * 118.41999 * 179.71144 * 24 23 21 26 26 C 1.38230 * 119.16181 * 0.50506 * 25 24 23 27 27 N 1.31848 * 120.76090 * 359.48374 * 26 25 24 28 28 C 1.31893 * 121.73058 * 0.27031 * 27 26 25 29 29 C 1.47186 * 88.01273 * 26.88011 * 15 14 13 30 30 C 1.47146 * 120.69643 * 332.82138 * 9 7 2 31 31 H 0.96994 * 120.00501 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.53092 * 244.50176 * 10 9 7 33 33 H 1.08997 * 109.53628 * 4.65315 * 10 9 7 34 34 H 1.08997 * 109.49134 * 176.47748 * 11 10 9 35 35 H 1.09000 * 109.48756 * 296.52837 * 11 10 9 36 36 H 1.08997 * 109.49245 * 181.13926 * 12 11 10 37 37 H 1.09002 * 109.49207 * 61.06957 * 12 11 10 38 38 H 1.09000 * 113.49057 * 105.68715 * 14 13 12 39 39 H 1.09001 * 113.54544 * 335.18765 * 14 13 12 40 40 H 1.08999 * 117.51767 * 145.04184 * 20 18 16 41 41 H 1.09007 * 117.49733 * 0.02562 * 20 18 16 42 42 H 1.08002 * 120.78849 * 359.97438 * 24 23 21 43 43 H 1.07999 * 120.41785 * 180.28575 * 25 24 23 44 44 H 1.07996 * 119.61560 * 179.75339 * 26 25 24 45 45 H 1.07990 * 119.61615 * 180.02562 * 28 27 26 46 46 H 1.09001 * 113.48849 * 87.85334 * 29 15 14 47 47 H 1.08989 * 113.49304 * 218.37118 * 29 15 14 48 48 H 1.09002 * 109.63614 * 111.52767 * 30 9 7 49 49 H 1.08997 * 109.64074 * 350.90988 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0562 -1.2219 -0.2681 9 7 1.3689 -2.3630 0.3415 10 6 1.8266 -3.6554 -0.1857 11 6 2.1077 -4.6029 0.9841 12 6 0.8479 -4.7331 1.8461 13 6 0.4426 -3.3556 2.3604 14 6 1.3128 -2.8329 3.5040 15 7 0.0835 -2.3240 4.1327 16 6 -0.2288 -1.3270 4.9842 17 8 0.6419 -0.5971 5.4087 18 6 -1.6597 -1.1190 5.4087 19 1 -2.2565 -2.0255 5.5100 20 6 -2.3690 0.1424 4.9100 21 6 -1.9495 0.0292 6.3774 22 1 -1.1052 0.6345 6.7074 23 6 -3.0382 -0.1796 7.3982 24 6 -2.7527 -0.1099 8.7535 25 6 -3.7869 -0.3026 9.6563 26 6 -5.0572 -0.5664 9.1792 27 7 -5.2919 -0.6254 7.8832 28 6 -4.3337 -0.4424 6.9956 29 6 -0.6547 -3.3851 3.4289 30 6 0.2065 -2.3418 1.2434 31 1 -0.4850 0.8400 -0.0004 32 1 1.0530 -4.0833 -0.8234 33 1 2.7380 -3.5103 -0.7657 34 1 2.3876 -5.5833 0.5988 35 1 2.9223 -4.2033 1.5881 36 1 1.0515 -5.3912 2.6908 37 1 0.0385 -5.1500 1.2467 38 1 2.0032 -2.0462 3.1999 39 1 1.7992 -3.6224 4.0770 40 1 -3.4324 0.0659 4.6833 41 1 -1.8006 0.8215 4.2745 42 1 -1.7494 0.0939 9.0974 43 1 -3.6018 -0.2507 10.7191 44 1 -5.8675 -0.7216 9.8761 45 1 -4.5643 -0.4979 5.9421 46 1 -0.6981 -4.3239 3.9812 47 1 -1.6298 -3.0658 3.0615 48 1 -0.6925 -2.6108 0.6887 49 1 0.0925 -1.3457 1.6709 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982031400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:37 Heat of formation + Delta-G solvation = 87.879994 kcal Electronic energy + Delta-G solvation = -29916.153516 eV Core-core repulsion = 26038.885029 eV Total energy + Delta-G solvation = -3877.268487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.77435 -40.33106 -38.66333 -36.48149 -35.71267 -32.96854 -32.63808 -31.12185 -30.42011 -29.74821 -26.64821 -25.70644 -25.38314 -24.62046 -23.88259 -22.99411 -22.26126 -21.01540 -20.61951 -18.82881 -17.88642 -17.64274 -16.99228 -16.72220 -16.33333 -15.60611 -15.44033 -15.22716 -14.78924 -14.51844 -14.09967 -14.07958 -13.72744 -13.57760 -13.38858 -13.26885 -13.00755 -12.90433 -12.44160 -12.27233 -12.09326 -12.01268 -11.85748 -11.56323 -11.29682 -11.17651 -10.94284 -10.75294 -10.55837 -10.44515 -10.25323 -10.07240 -9.93737 -9.91194 -9.81664 -9.65237 -9.46103 -9.37681 -8.98184 -8.48772 -8.31379 -6.71160 -5.81232 -3.22105 0.82117 1.03994 2.73406 3.07061 3.38905 3.47853 3.48282 3.50706 3.96018 4.12372 4.40327 4.47694 4.56304 4.67102 4.68504 4.73148 4.76692 4.83059 4.99249 5.10044 5.25327 5.28956 5.34661 5.44413 5.48898 5.55179 5.63144 5.66330 5.71109 5.75034 5.79489 5.82249 5.89097 5.94664 6.01290 6.14243 6.16971 6.21420 6.28122 6.39432 6.45050 6.48967 6.57494 6.73688 6.81657 6.95775 7.26277 7.59568 7.73567 7.79547 8.10272 8.42021 8.46730 9.18927 9.82679 10.38278 11.27760 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.003036 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.616282 B = 9221.256104 C =10393.489243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.006 3.994 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.144 3.856 11 C -0.134 4.134 12 C -0.092 4.092 13 C -0.110 4.110 14 C 0.119 3.881 15 N -0.632 5.632 16 C 0.571 3.429 17 O -0.546 6.546 18 C -0.164 4.164 19 H 0.121 0.879 20 C -0.137 4.137 21 C -0.089 4.089 22 H 0.129 0.871 23 C -0.097 4.097 24 C -0.067 4.067 25 C -0.171 4.171 26 C 0.088 3.912 27 N -0.482 5.482 28 C 0.098 3.902 29 C 0.104 3.896 30 C 0.201 3.799 31 H 0.253 0.747 32 H 0.018 0.982 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.024 0.976 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.348 -6.697 14.523 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.017 3.983 11 C -0.173 4.173 12 C -0.130 4.130 13 C -0.113 4.113 14 C -0.003 4.003 15 N -0.365 5.365 16 C 0.361 3.639 17 O -0.425 6.425 18 C -0.185 4.185 19 H 0.139 0.861 20 C -0.174 4.174 21 C -0.108 4.108 22 H 0.147 0.853 23 C -0.099 4.099 24 C -0.093 4.093 25 C -0.190 4.190 26 C -0.068 4.068 27 N -0.190 5.190 28 C -0.059 4.059 29 C -0.020 4.020 30 C 0.075 3.925 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.172 0.828 45 H 0.174 0.826 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.042 0.958 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.879 -6.138 14.584 17.676 hybrid contribution 1.254 0.888 0.429 1.596 sum -6.625 -5.250 15.013 17.229 Atomic orbital electron populations 1.70009 1.05174 1.25355 1.54019 1.24989 0.95293 0.98301 1.00723 0.86295 0.79511 0.84178 0.77274 1.20233 1.21710 1.21494 1.19183 0.92514 0.84648 1.41744 0.91612 1.44031 1.34452 1.01543 1.51180 1.20890 0.97533 0.86930 0.92905 1.22021 0.97197 0.99107 0.99005 1.21221 0.98389 0.94586 0.98811 1.22756 0.94612 0.98311 0.95584 1.22952 0.89337 0.97547 0.90465 1.49379 1.13015 1.29245 1.44880 1.18948 0.88861 0.79324 0.76800 1.90687 1.50103 1.45994 1.55672 1.22242 0.95491 0.95213 1.05598 0.86081 1.23172 1.01164 0.97720 0.95389 1.21009 0.98871 1.01169 0.89756 0.85316 1.20179 0.95052 1.00447 0.94226 1.21493 0.99918 0.95680 0.92257 1.22147 0.94154 1.01740 1.00994 1.22776 0.96056 0.95798 0.92215 1.67723 1.35641 1.12721 1.02905 1.22751 0.88204 0.95164 0.99750 1.23168 0.98003 0.89590 0.91241 1.20448 0.88727 0.96548 0.86771 0.93740 0.96408 0.92840 0.92980 0.92320 0.93116 0.91954 0.89676 0.91147 0.87322 0.86977 0.84605 0.84722 0.82835 0.82557 0.90462 0.90388 0.95828 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.57 11.16 55.49 0.62 -24.95 16 2 C 0.01 0.15 4.93 -17.43 -0.09 0.07 16 3 Si 0.90 22.06 29.59 -169.99 -5.03 17.03 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.25 -6.75 9.60 -15.06 -0.14 -6.89 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.06 3.01 -172.51 -0.52 -14.58 16 10 C 0.14 2.83 6.45 -3.75 -0.02 2.81 16 11 C -0.13 -2.11 6.03 -26.55 -0.16 -2.27 16 12 C -0.09 -1.33 5.11 -26.88 -0.14 -1.47 16 13 C -0.11 -1.86 0.96 -154.87 -0.15 -2.01 16 14 C 0.12 2.10 7.53 -8.18 -0.06 2.04 16 15 N -0.63 -10.88 3.48 -184.93 -0.64 -11.53 16 16 C 0.57 10.28 7.86 -10.99 -0.09 10.20 16 17 O -0.55 -11.83 17.03 5.55 0.09 -11.74 16 18 C -0.16 -2.25 5.65 -91.74 -0.52 -2.77 16 19 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 20 C -0.14 -1.74 9.58 -26.68 -0.26 -1.99 16 21 C -0.09 -1.11 5.57 -91.76 -0.51 -1.62 16 22 H 0.13 1.76 7.67 -51.93 -0.40 1.37 16 23 C -0.10 -1.08 5.62 -104.48 -0.59 -1.67 16 24 C -0.07 -0.66 9.89 -39.27 -0.39 -1.05 16 25 C -0.17 -1.44 10.11 -39.44 -0.40 -1.84 16 26 C 0.09 0.82 11.18 -17.55 -0.20 0.63 16 27 N -0.48 -5.59 10.36 -13.26 -0.14 -5.73 16 28 C 0.10 1.09 10.47 -17.55 -0.18 0.91 16 29 C 0.10 1.48 7.60 -8.02 -0.06 1.42 16 30 C 0.20 4.47 4.43 -3.85 -0.02 4.45 16 31 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.97 8.02 -51.93 -0.42 0.55 16 36 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.81 8.11 -51.93 -0.42 1.39 16 39 H 0.07 1.08 8.07 -51.93 -0.42 0.66 16 40 H 0.11 1.11 6.21 -51.93 -0.32 0.78 16 41 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.16 1.52 6.04 -52.49 -0.32 1.20 16 46 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 47 H 0.08 1.07 8.12 -51.94 -0.42 0.65 16 48 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.09 2.40 5.93 -51.93 -0.31 2.09 16 LS Contribution 396.04 15.07 5.97 5.97 Total: -1.00 -32.56 396.04 -11.24 -43.80 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.63 Total: 2.79 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -3.97 Total: -1.07 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.68 Total: -56.78 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.56 -11.24 -43.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982031400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.680 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds