Wall clock time and date at job start Sat Apr 11 2020 06:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99803 * 2 1 4 4 H 1.48505 * 109.46809 * 270.00125 * 3 2 1 5 5 H 1.48498 * 109.47166 * 30.00575 * 3 2 1 6 6 H 1.48499 * 109.46782 * 150.00494 * 3 2 1 7 7 C 1.38809 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00096 * 194.60223 * 7 2 1 9 9 N 1.36939 * 119.99991 * 14.59795 * 7 2 1 10 10 C 1.43464 * 118.93935 * 204.95110 * 9 7 2 11 11 C 1.53790 * 107.96098 * 273.63360 * 10 9 7 12 12 C 1.47608 * 111.84556 * 281.54432 * 11 10 9 13 13 N 1.48215 * 110.03845 * 58.43441 * 12 11 10 14 14 C 1.34767 * 119.97107 * 102.55602 * 13 12 11 15 15 O 1.21286 * 119.99875 * 359.71912 * 14 13 12 16 16 C 1.50698 * 120.00446 * 179.72514 * 14 13 12 17 17 C 1.52993 * 109.47677 * 179.97438 * 16 14 13 18 18 N 1.46501 * 109.47718 * 179.97438 * 17 16 14 19 19 C 1.36834 * 125.06119 * 265.30145 * 18 17 16 20 20 C 1.34238 * 109.92885 * 180.14062 * 19 18 17 21 21 C 1.46493 * 106.99525 * 359.60904 * 20 19 18 22 22 C 1.39633 * 134.02513 * 180.21861 * 21 20 19 23 23 C 1.36616 * 119.76090 * 179.97438 * 22 21 20 24 24 C 1.38835 * 120.52992 * 0.03891 * 23 22 21 25 25 C 1.37742 * 120.66738 * 359.97438 * 24 23 22 26 26 C 1.37680 * 125.06402 * 84.99179 * 18 17 16 27 27 C 1.43626 * 120.05748 * 282.27702 * 13 12 11 28 28 C 1.48861 * 118.93957 * 24.97928 * 9 7 2 29 29 H 0.97000 * 119.99722 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.76455 * 33.25394 * 10 9 7 31 31 H 1.09005 * 109.75985 * 153.96604 * 10 9 7 32 32 H 1.08993 * 109.00948 * 42.27446 * 11 10 9 33 33 H 1.09004 * 109.00708 * 161.14291 * 11 10 9 34 34 H 1.09001 * 109.44726 * 298.27889 * 12 11 10 35 35 H 1.09000 * 109.51328 * 178.62937 * 12 11 10 36 36 H 1.08997 * 109.47250 * 59.99530 * 16 14 13 37 37 H 1.09007 * 109.46675 * 300.00013 * 16 14 13 38 38 H 1.09002 * 109.47538 * 59.99407 * 17 16 14 39 39 H 1.09007 * 109.47148 * 299.99808 * 17 16 14 40 40 H 1.08002 * 125.03252 * 0.02789 * 19 18 17 41 41 H 1.07994 * 126.50272 * 179.86731 * 20 19 18 42 42 H 1.08001 * 120.11848 * 0.02562 * 22 21 20 43 43 H 1.08008 * 119.73983 * 180.02562 * 23 22 21 44 44 H 1.07999 * 119.66735 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.11481 * 179.97438 * 25 24 23 46 46 H 1.09003 * 108.86766 * 211.69903 * 27 13 12 47 47 H 1.08998 * 108.87780 * 330.13577 * 27 13 12 48 48 H 1.08997 * 109.47829 * 20.63027 * 28 9 7 49 49 H 1.09006 * 109.48077 * 260.60956 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0641 -1.2173 0.2352 9 7 1.3588 -2.3688 -0.3000 10 6 1.8828 -3.6056 0.2039 11 6 2.9389 -4.1139 -0.7918 12 6 2.3204 -4.7504 -1.9712 13 7 1.4265 -3.7878 -2.6576 14 6 1.8349 -3.1780 -3.7879 15 8 2.9353 -3.4133 -4.2403 16 6 0.9242 -2.2038 -4.4898 17 6 1.6242 -1.6584 -5.7361 18 7 0.7387 -0.7117 -6.4188 19 6 -0.0988 -1.0255 -7.4544 20 6 -0.7664 0.0696 -7.8509 21 6 -0.3268 1.1729 -6.9933 22 6 -0.6526 2.5283 -6.9125 23 6 -0.0488 3.3160 -5.9737 24 6 0.8871 2.7800 -5.0995 25 6 1.2234 1.4457 -5.1619 26 6 0.6209 0.6248 -6.1100 27 6 0.1232 -3.5087 -2.1224 28 6 0.1300 -2.3129 -1.1383 29 1 -0.4850 0.8401 0.0004 30 1 2.3436 -3.4410 1.1780 31 1 1.0792 -4.3364 0.2952 32 1 3.5510 -3.2738 -1.1198 33 1 3.5762 -4.8433 -0.2918 34 1 1.7410 -5.6173 -1.6536 35 1 3.0998 -5.0739 -2.6611 36 1 0.6862 -1.3797 -3.8173 37 1 0.0049 -2.7115 -4.7818 38 1 1.8626 -2.4822 -6.4089 39 1 2.5433 -1.1505 -5.4437 40 1 -0.2055 -2.0082 -7.8896 41 1 -1.4931 0.1255 -8.6478 42 1 -1.3799 2.9522 -7.5891 43 1 -0.3014 4.3643 -5.9112 44 1 1.3562 3.4156 -4.3630 45 1 1.9529 1.0382 -4.4778 46 1 -0.5552 -3.2842 -2.9455 47 1 -0.2402 -4.3934 -1.5997 48 1 0.1157 -1.3792 -1.7006 49 1 -0.7501 -2.3646 -0.4973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989629925.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:56 Heat of formation + Delta-G solvation = 58.772898 kcal Electronic energy + Delta-G solvation = -30893.708060 eV Core-core repulsion = 27015.177394 eV Total energy + Delta-G solvation = -3878.530666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.21780 -39.82928 -37.23132 -36.82897 -34.31295 -33.80105 -32.70018 -31.04398 -30.73466 -29.02548 -28.51827 -27.57945 -25.64422 -24.20389 -23.72253 -22.48450 -21.71414 -21.27755 -19.97053 -19.79982 -18.51367 -17.46767 -16.72590 -16.37391 -16.06007 -15.98290 -15.45712 -15.26815 -14.87022 -14.52520 -14.05767 -13.95915 -13.71274 -13.60847 -13.37870 -13.09077 -13.04589 -12.74373 -12.48181 -12.41249 -12.29492 -12.16953 -11.81597 -11.52708 -11.42732 -11.17262 -11.13109 -11.01340 -10.81061 -10.66138 -10.58377 -10.28471 -10.23371 -9.89267 -9.74841 -9.57349 -9.40253 -8.52159 -8.13447 -8.03146 -7.51686 -6.75304 -5.83500 -3.25616 1.30380 1.80468 2.76679 2.87355 2.98476 3.34248 3.42418 3.42969 3.51908 4.10606 4.46538 4.74189 4.76187 4.88016 4.91067 5.01631 5.19005 5.22137 5.29579 5.32269 5.42872 5.47130 5.56593 5.60356 5.62340 5.73102 5.73776 5.84494 5.86789 5.93875 6.02078 6.03493 6.05233 6.08060 6.24411 6.24604 6.39288 6.47326 6.65843 6.77091 6.79649 6.83675 6.90203 6.95453 6.99663 7.29988 7.38023 7.42068 7.43383 7.76356 7.87147 8.39235 8.52998 9.16308 9.83626 10.28721 11.24380 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.004790 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.647216 B = 5843.948000 C = 7867.580032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.006 3.994 3 Si 0.896 3.104 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.163 3.837 11 C -0.169 4.169 12 C 0.129 3.871 13 N -0.581 5.581 14 C 0.527 3.473 15 O -0.561 6.561 16 C -0.158 4.158 17 C 0.129 3.871 18 N -0.481 5.481 19 C 0.052 3.948 20 C -0.210 4.210 21 C -0.112 4.112 22 C -0.078 4.078 23 C -0.146 4.146 24 C -0.100 4.100 25 C -0.118 4.118 26 C 0.101 3.899 27 C 0.077 3.923 28 C 0.165 3.835 29 H 0.254 0.746 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.165 0.835 41 H 0.143 0.857 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 -3.768 -12.244 13.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.192 4.192 3 Si 0.726 3.274 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.034 3.966 11 C -0.210 4.210 12 C 0.008 3.992 13 N -0.311 5.311 14 C 0.315 3.685 15 O -0.441 6.441 16 C -0.199 4.199 17 C 0.007 3.993 18 N -0.163 5.163 19 C -0.073 4.073 20 C -0.236 4.236 21 C -0.116 4.116 22 C -0.097 4.097 23 C -0.165 4.165 24 C -0.120 4.120 25 C -0.139 4.139 26 C -0.005 4.005 27 C -0.048 4.048 28 C 0.039 3.961 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.182 0.818 41 H 0.161 0.839 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.095 0.905 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.858 -4.028 -12.299 13.075 hybrid contribution 0.319 0.893 0.286 0.990 sum -1.539 -3.135 -12.014 12.511 Atomic orbital electron populations 1.69993 1.05054 1.25479 1.54602 1.24942 0.95287 0.98107 1.00847 0.86383 0.79151 0.83987 0.77903 1.21213 1.21685 1.20587 1.19170 0.92095 0.84839 1.42289 0.91814 1.43636 1.29000 1.02006 1.56549 1.20279 0.93652 0.88385 0.94280 1.21959 1.00801 1.00653 0.97633 1.20668 0.93599 0.90306 0.94630 1.47360 1.17124 1.42702 1.23938 1.20142 0.87078 0.80595 0.80735 1.90639 1.21933 1.64556 1.67006 1.22058 0.99467 1.00336 0.97999 1.21475 0.92114 0.92271 0.93455 1.44073 1.36146 1.06693 1.29424 1.21786 0.94198 0.99737 0.91598 1.21596 1.06283 0.91383 1.04290 1.19201 0.99835 0.94035 0.98532 1.20185 0.99425 0.91550 0.98491 1.20596 0.99023 0.99669 0.97260 1.20820 0.97991 0.94230 0.98935 1.20164 1.01993 0.93321 0.98410 1.18262 0.99687 0.83857 0.98712 1.22255 0.83017 1.01163 0.98403 1.21912 0.88951 0.94532 0.90724 0.93593 0.93589 0.94884 0.91316 0.92688 0.92095 0.90467 0.87445 0.88830 0.88687 0.88859 0.81768 0.83911 0.86445 0.86353 0.85980 0.86157 0.91688 0.91972 0.90503 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.01 10.90 55.49 0.60 -24.40 16 2 C 0.01 0.17 4.95 -17.43 -0.09 0.09 16 3 Si 0.90 21.47 29.58 -169.99 -5.03 16.45 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -6.70 9.28 -15.06 -0.14 -6.84 16 8 H 0.06 1.71 7.87 -52.49 -0.41 1.30 16 9 N -0.59 -13.72 2.54 -172.00 -0.44 -14.16 16 10 C 0.16 3.19 5.63 -5.24 -0.03 3.16 16 11 C -0.17 -2.96 5.65 -28.92 -0.16 -3.13 16 12 C 0.13 2.07 5.74 -5.70 -0.03 2.04 16 13 N -0.58 -9.91 2.45 -176.41 -0.43 -10.34 16 14 C 0.53 9.25 7.67 -10.99 -0.08 9.16 16 15 O -0.56 -11.11 15.42 5.55 0.09 -11.02 16 16 C -0.16 -2.39 4.58 -27.89 -0.13 -2.51 16 17 C 0.13 1.81 5.29 -4.04 -0.02 1.79 16 18 N -0.48 -6.82 2.78 -114.42 -0.32 -7.14 16 19 C 0.05 0.63 11.27 -16.73 -0.19 0.44 16 20 C -0.21 -2.64 11.08 -37.67 -0.42 -3.05 16 21 C -0.11 -1.66 6.37 -105.14 -0.67 -2.33 16 22 C -0.08 -1.06 10.05 -39.65 -0.40 -1.46 16 23 C -0.15 -2.00 9.97 -39.95 -0.40 -2.40 16 24 C -0.10 -1.54 10.01 -39.54 -0.40 -1.94 16 25 C -0.12 -1.98 10.00 -39.43 -0.39 -2.37 16 26 C 0.10 1.61 6.81 -83.99 -0.57 1.04 16 27 C 0.08 1.28 5.05 -4.58 -0.02 1.26 16 28 C 0.16 3.55 5.18 -1.75 -0.01 3.54 16 29 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.05 0.93 8.02 -51.93 -0.42 0.51 16 31 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16 32 H 0.07 1.44 7.91 -51.93 -0.41 1.03 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 35 H 0.08 1.26 7.13 -51.93 -0.37 0.89 16 36 H 0.11 1.90 7.32 -51.93 -0.38 1.52 16 37 H 0.09 1.22 7.37 -51.93 -0.38 0.83 16 38 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 39 H 0.09 1.44 8.10 -51.93 -0.42 1.02 16 40 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 44 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.12 2.09 8.06 -52.49 -0.42 1.66 16 46 H 0.06 0.95 6.38 -51.93 -0.33 0.62 16 47 H 0.06 0.93 7.73 -51.93 -0.40 0.53 16 48 H 0.08 1.87 5.72 -51.93 -0.30 1.57 16 49 H 0.04 0.98 8.00 -51.93 -0.42 0.57 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -30.80 389.61 -11.37 -42.17 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.56 Total: 6.11 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -4.15 Total: -3.53 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.58 Total: -56.04 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.80 -11.37 -42.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989629925.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.943 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds