Wall clock time and date at job start Sat Apr 11 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99803 * 2 1 4 4 H 1.48505 * 109.46809 * 270.00125 * 3 2 1 5 5 H 1.48498 * 109.47166 * 30.00575 * 3 2 1 6 6 H 1.48499 * 109.46782 * 150.00494 * 3 2 1 7 7 C 1.38809 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00096 * 194.60223 * 7 2 1 9 9 N 1.36939 * 119.99991 * 14.59795 * 7 2 1 10 10 C 1.43464 * 118.93935 * 204.95110 * 9 7 2 11 11 C 1.53790 * 107.96098 * 273.63360 * 10 9 7 12 12 C 1.47608 * 111.84556 * 281.54432 * 11 10 9 13 13 N 1.48215 * 110.03845 * 58.43441 * 12 11 10 14 14 C 1.34767 * 119.97107 * 102.55602 * 13 12 11 15 15 O 1.21286 * 119.99875 * 359.71912 * 14 13 12 16 16 C 1.50698 * 120.00446 * 179.72514 * 14 13 12 17 17 C 1.52993 * 109.47677 * 179.97438 * 16 14 13 18 18 N 1.46501 * 109.47718 * 179.97438 * 17 16 14 19 19 C 1.36834 * 125.06119 * 265.30145 * 18 17 16 20 20 C 1.34238 * 109.92885 * 180.14062 * 19 18 17 21 21 C 1.46493 * 106.99525 * 359.60904 * 20 19 18 22 22 C 1.39633 * 134.02513 * 180.21861 * 21 20 19 23 23 C 1.36616 * 119.76090 * 179.97438 * 22 21 20 24 24 C 1.38835 * 120.52992 * 0.03891 * 23 22 21 25 25 C 1.37742 * 120.66738 * 359.97438 * 24 23 22 26 26 C 1.37680 * 125.06402 * 84.99179 * 18 17 16 27 27 C 1.43626 * 120.05748 * 282.27702 * 13 12 11 28 28 C 1.48861 * 118.93957 * 24.97928 * 9 7 2 29 29 H 0.97000 * 119.99722 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.76455 * 33.25394 * 10 9 7 31 31 H 1.09005 * 109.75985 * 153.96604 * 10 9 7 32 32 H 1.08993 * 109.00948 * 42.27446 * 11 10 9 33 33 H 1.09004 * 109.00708 * 161.14291 * 11 10 9 34 34 H 1.09001 * 109.44726 * 298.27889 * 12 11 10 35 35 H 1.09000 * 109.51328 * 178.62937 * 12 11 10 36 36 H 1.08997 * 109.47250 * 59.99530 * 16 14 13 37 37 H 1.09007 * 109.46675 * 300.00013 * 16 14 13 38 38 H 1.09002 * 109.47538 * 59.99407 * 17 16 14 39 39 H 1.09007 * 109.47148 * 299.99808 * 17 16 14 40 40 H 1.08002 * 125.03252 * 0.02789 * 19 18 17 41 41 H 1.07994 * 126.50272 * 179.86731 * 20 19 18 42 42 H 1.08001 * 120.11848 * 0.02562 * 22 21 20 43 43 H 1.08008 * 119.73983 * 180.02562 * 23 22 21 44 44 H 1.07999 * 119.66735 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.11481 * 179.97438 * 25 24 23 46 46 H 1.09003 * 108.86766 * 211.69903 * 27 13 12 47 47 H 1.08998 * 108.87780 * 330.13577 * 27 13 12 48 48 H 1.08997 * 109.47829 * 20.63027 * 28 9 7 49 49 H 1.09006 * 109.48077 * 260.60956 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0641 -1.2173 0.2352 9 7 1.3588 -2.3688 -0.3000 10 6 1.8828 -3.6056 0.2039 11 6 2.9389 -4.1139 -0.7918 12 6 2.3204 -4.7504 -1.9712 13 7 1.4265 -3.7878 -2.6576 14 6 1.8349 -3.1780 -3.7879 15 8 2.9353 -3.4133 -4.2403 16 6 0.9242 -2.2038 -4.4898 17 6 1.6242 -1.6584 -5.7361 18 7 0.7387 -0.7117 -6.4188 19 6 -0.0988 -1.0255 -7.4544 20 6 -0.7664 0.0696 -7.8509 21 6 -0.3268 1.1729 -6.9933 22 6 -0.6526 2.5283 -6.9125 23 6 -0.0488 3.3160 -5.9737 24 6 0.8871 2.7800 -5.0995 25 6 1.2234 1.4457 -5.1619 26 6 0.6209 0.6248 -6.1100 27 6 0.1232 -3.5087 -2.1224 28 6 0.1300 -2.3129 -1.1383 29 1 -0.4850 0.8401 0.0004 30 1 2.3436 -3.4410 1.1780 31 1 1.0792 -4.3364 0.2952 32 1 3.5510 -3.2738 -1.1198 33 1 3.5762 -4.8433 -0.2918 34 1 1.7410 -5.6173 -1.6536 35 1 3.0998 -5.0739 -2.6611 36 1 0.6862 -1.3797 -3.8173 37 1 0.0049 -2.7115 -4.7818 38 1 1.8626 -2.4822 -6.4089 39 1 2.5433 -1.1505 -5.4437 40 1 -0.2055 -2.0082 -7.8896 41 1 -1.4931 0.1255 -8.6478 42 1 -1.3799 2.9522 -7.5891 43 1 -0.3014 4.3643 -5.9112 44 1 1.3562 3.4156 -4.3630 45 1 1.9529 1.0382 -4.4778 46 1 -0.5552 -3.2842 -2.9455 47 1 -0.2402 -4.3934 -1.5997 48 1 0.1157 -1.3792 -1.7006 49 1 -0.7501 -2.3646 -0.4973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989629925.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:55 Heat of formation + Delta-G solvation = 44.098322 kcal Electronic energy + Delta-G solvation = -30894.344397 eV Core-core repulsion = 27015.177394 eV Total energy + Delta-G solvation = -3879.167003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.28994 -41.22320 -38.72841 -38.00281 -35.98900 -35.03044 -34.17159 -32.78589 -31.98797 -30.18064 -29.63001 -29.17841 -27.21693 -25.59602 -25.37680 -23.61494 -23.05291 -22.38893 -21.50405 -21.01997 -19.90795 -18.92969 -18.29971 -17.56740 -17.46400 -17.30101 -16.86739 -16.47993 -16.33429 -15.89542 -15.68326 -15.38803 -15.17180 -14.90908 -14.67659 -14.49012 -14.34823 -13.98722 -13.87778 -13.63080 -13.57336 -13.46094 -13.30699 -13.14886 -12.88416 -12.57913 -12.54412 -12.38106 -12.35879 -12.25156 -12.10115 -11.78158 -11.73747 -11.69649 -11.46477 -10.91550 -10.60609 -10.51826 -9.58184 -9.13457 -8.67746 -8.57886 -7.88886 -5.31336 0.19750 0.67361 1.36663 1.40712 1.46006 1.53505 1.73258 1.85667 2.24478 2.46592 2.97360 3.24766 3.51380 3.63046 3.70215 3.72764 3.82020 3.98196 4.07252 4.10980 4.18812 4.23104 4.26440 4.30272 4.41123 4.49085 4.55381 4.56707 4.63773 4.71386 4.75398 4.80550 4.82004 4.91253 4.92844 5.03670 5.07660 5.14932 5.22215 5.26103 5.46598 5.54873 5.57709 5.66908 5.69493 5.77387 5.84875 5.91585 6.28758 6.36431 6.41471 6.47591 7.13844 7.16540 7.93472 8.30548 9.14802 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.004790 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.647216 B = 5843.948000 C = 7867.580032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.036 4.036 3 Si 0.941 3.059 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.257 4.257 8 H 0.051 0.949 9 N -0.605 5.605 10 C 0.158 3.842 11 C -0.155 4.155 12 C 0.126 3.874 13 N -0.583 5.583 14 C 0.521 3.479 15 O -0.586 6.586 16 C -0.145 4.145 17 C 0.137 3.863 18 N -0.486 5.486 19 C 0.055 3.945 20 C -0.213 4.213 21 C -0.128 4.128 22 C -0.077 4.077 23 C -0.151 4.151 24 C -0.115 4.115 25 C -0.148 4.148 26 C 0.073 3.927 27 C 0.090 3.910 28 C 0.171 3.829 29 H 0.248 0.752 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.025 0.975 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.205 0.795 41 H 0.173 0.827 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.123 0.877 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.041 0.959 49 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.920 -5.639 -14.176 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.232 4.232 3 Si 0.770 3.230 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.388 4.388 8 H 0.069 0.931 9 N -0.327 5.327 10 C 0.031 3.969 11 C -0.196 4.196 12 C 0.005 3.995 13 N -0.313 5.313 14 C 0.310 3.690 15 O -0.468 6.468 16 C -0.186 4.186 17 C 0.015 3.985 18 N -0.169 5.169 19 C -0.069 4.069 20 C -0.238 4.238 21 C -0.133 4.133 22 C -0.095 4.095 23 C -0.170 4.170 24 C -0.135 4.135 25 C -0.169 4.169 26 C -0.032 4.032 27 C -0.035 4.035 28 C 0.046 3.954 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.085 0.915 40 H 0.222 0.778 41 H 0.191 0.809 42 H 0.167 0.833 43 H 0.164 0.836 44 H 0.141 0.859 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.059 0.941 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -3.274 -5.928 -14.227 15.756 hybrid contribution 0.801 1.450 0.919 1.894 sum -2.473 -4.478 -13.307 14.257 Atomic orbital electron populations 1.70111 1.05768 1.25341 1.55923 1.25422 0.95927 1.00176 1.01644 0.85666 0.78330 0.81474 0.77507 1.21545 1.21736 1.20231 1.19288 0.91756 0.86446 1.41289 0.93130 1.43863 1.29232 1.02279 1.57332 1.20446 0.94760 0.87516 0.94185 1.21761 0.99940 0.99884 0.97969 1.20807 0.94080 0.90925 0.93640 1.47496 1.17458 1.42643 1.23705 1.20534 0.86958 0.80509 0.80991 1.90622 1.22963 1.65396 1.67814 1.21937 1.00256 0.98803 0.97555 1.21345 0.91100 0.92494 0.93577 1.44168 1.36674 1.05988 1.30079 1.22489 0.92677 1.01460 0.90228 1.21990 1.06825 0.90387 1.04573 1.19691 0.99591 0.95262 0.98765 1.20601 0.99332 0.91173 0.98431 1.20900 0.98248 1.01119 0.96684 1.21012 0.98857 0.93868 0.99738 1.20145 1.02895 0.94509 0.99360 1.18454 1.00576 0.84980 0.99233 1.22051 0.83390 0.99838 0.98210 1.21704 0.87442 0.95476 0.90805 0.94257 0.94755 0.92281 0.95580 0.89597 0.88293 0.90579 0.90618 0.85961 0.86400 0.91499 0.77808 0.80925 0.83316 0.83626 0.85908 0.88762 0.89237 0.89049 0.94087 0.96093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.94 10.90 21.65 0.24 -52.71 16 2 C -0.04 -1.98 4.95 84.86 0.42 -1.56 16 3 Si 0.94 45.95 29.58 68.60 2.03 47.98 16 4 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 7 C -0.26 -14.02 9.28 84.03 0.78 -13.24 16 8 H 0.05 2.84 7.87 -2.91 -0.02 2.81 16 9 N -0.60 -28.49 2.54 -698.08 -1.77 -30.26 16 10 C 0.16 6.04 5.63 87.21 0.49 6.53 16 11 C -0.15 -5.21 5.65 29.17 0.16 -5.04 16 12 C 0.13 3.71 5.74 84.36 0.48 4.19 16 13 N -0.58 -18.91 2.45 -830.42 -2.03 -20.94 16 14 C 0.52 17.98 7.67 87.66 0.67 18.65 16 15 O -0.59 -23.06 15.42 -3.05 -0.05 -23.11 16 16 C -0.14 -4.34 4.58 29.85 0.14 -4.20 16 17 C 0.14 3.84 5.29 86.38 0.46 4.30 16 18 N -0.49 -13.52 2.78 -515.93 -1.43 -14.95 16 19 C 0.06 1.17 11.27 83.00 0.94 2.11 16 20 C -0.21 -4.74 11.08 23.51 0.26 -4.48 16 21 C -0.13 -3.69 6.37 -20.20 -0.13 -3.82 16 22 C -0.08 -1.98 10.05 22.23 0.22 -1.76 16 23 C -0.15 -4.05 9.97 22.03 0.22 -3.83 16 24 C -0.12 -3.74 10.01 22.30 0.22 -3.51 16 25 C -0.15 -5.36 10.00 22.37 0.22 -5.14 16 26 C 0.07 2.41 6.81 39.03 0.27 2.68 16 27 C 0.09 2.81 5.05 87.55 0.44 3.25 16 28 C 0.17 7.46 5.18 86.56 0.45 7.91 16 29 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.03 1.38 8.02 -2.39 -0.02 1.36 16 31 H 0.06 1.96 7.59 -2.38 -0.02 1.94 16 32 H 0.03 1.09 7.91 -2.39 -0.02 1.07 16 33 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.10 2.22 8.05 -2.39 -0.02 2.20 16 35 H 0.08 2.31 7.13 -2.39 -0.02 2.29 16 36 H 0.08 2.82 7.32 -2.39 -0.02 2.80 16 37 H 0.12 2.89 7.37 -2.38 -0.02 2.88 16 38 H 0.12 2.75 8.07 -2.39 -0.02 2.73 16 39 H 0.07 2.21 8.10 -2.38 -0.02 2.19 16 40 H 0.21 2.52 8.06 -2.91 -0.02 2.49 16 41 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 43 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 44 H 0.12 3.75 8.06 -2.91 -0.02 3.73 16 45 H 0.09 3.72 8.06 -2.91 -0.02 3.70 16 46 H 0.09 2.37 6.38 -2.39 -0.02 2.36 16 47 H 0.09 2.37 7.73 -2.39 -0.02 2.36 16 48 H 0.04 2.07 5.72 -2.39 -0.01 2.06 16 49 H 0.02 0.99 8.00 -2.38 -0.02 0.98 16 Total: -1.00 -71.00 389.61 4.63 -66.36 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.93 Total: 24.58 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 6.72 Total: 3.05 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -5.00 Total: -118.86 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.11 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -71.00 4.63 -66.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989629925.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.462 kcal (2) G-P(sol) polarization free energy of solvation -70.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds