Wall clock time and date at job start Sat Apr 11 2020 06:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.46902 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47173 * 299.99926 * 3 2 1 6 6 H 1.48500 * 109.47069 * 60.00381 * 3 2 1 7 7 C 1.38819 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99919 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99950 * 359.97438 * 7 2 1 10 10 C 1.47371 * 125.57962 * 0.03828 * 9 7 2 11 11 C 1.56230 * 104.46627 * 154.62626 * 10 9 7 12 12 C 1.54917 * 101.14883 * 38.11665 * 11 10 9 13 13 N 1.46498 * 112.33469 * 85.13497 * 12 11 10 14 14 C 1.34777 * 119.99828 * 64.07822 * 13 12 11 15 15 O 1.21513 * 119.99898 * 0.28095 * 14 13 12 16 16 C 1.48173 * 120.00085 * 180.27625 * 14 13 12 17 17 C 1.39308 * 119.72313 * 179.72931 * 16 14 13 18 18 C 1.38590 * 119.05867 * 179.75524 * 17 16 14 19 19 C 1.38623 * 118.48372 * 0.51018 * 18 17 16 20 20 C 1.50700 * 120.32077 * 179.70726 * 19 18 17 21 21 C 1.53007 * 117.50174 * 188.64336 * 20 19 18 22 22 C 1.52992 * 60.00034 * 252.51156 * 21 20 19 23 23 C 1.38555 * 119.35780 * 359.73331 * 19 18 17 24 24 N 1.31519 * 120.90137 * 0.02562 * 23 19 18 25 25 C 1.53584 * 109.57348 * 210.61365 * 12 11 10 26 26 C 1.54164 * 106.70204 * 112.45207 * 25 12 11 27 27 C 1.54758 * 104.36763 * 335.86849 * 26 25 12 28 28 C 1.46976 * 125.58081 * 180.02562 * 9 7 2 29 29 H 1.08997 * 111.81410 * 59.09462 * 28 9 7 30 30 H 0.96994 * 119.99985 * 359.97438 * 1 2 3 31 31 H 1.08993 * 110.37143 * 274.11133 * 10 9 7 32 32 H 1.09007 * 110.36753 * 36.33378 * 10 9 7 33 33 H 1.09002 * 112.18788 * 279.80101 * 11 10 9 34 34 H 1.08995 * 110.32112 * 155.63204 * 11 10 9 35 35 H 0.97001 * 120.00384 * 244.36269 * 13 12 11 36 36 H 1.08006 * 120.46864 * 359.97438 * 17 16 14 37 37 H 1.07994 * 120.75631 * 180.24064 * 18 17 16 38 38 H 1.09000 * 115.55208 * 334.35470 * 20 19 18 39 39 H 1.09000 * 117.49506 * 0.02562 * 21 20 19 40 40 H 1.08998 * 117.49864 * 145.01441 * 21 20 19 41 41 H 1.09006 * 117.49567 * 252.50754 * 22 21 20 42 42 H 1.09004 * 117.50264 * 107.48761 * 22 21 20 43 43 H 1.08003 * 119.55352 * 179.97438 * 23 19 18 44 44 H 1.09002 * 110.01969 * 232.60712 * 25 12 11 45 45 H 1.09009 * 110.01478 * 353.99231 * 25 12 11 46 46 H 1.08996 * 110.81036 * 216.92502 * 26 25 12 47 47 H 1.09006 * 110.09953 * 94.45786 * 26 25 12 48 48 H 1.08995 * 110.67302 * 278.89616 * 27 26 25 49 49 H 1.08998 * 110.81869 * 155.82006 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1412 -2.5313 -0.0008 11 6 -0.3966 -3.9297 -0.6489 12 6 0.7720 -4.7540 -0.0532 13 7 0.4508 -5.3015 1.2670 14 6 -0.5401 -6.2055 1.3987 15 8 -1.1637 -6.5702 0.4216 16 6 -0.8691 -6.7548 2.7350 17 6 -1.8983 -7.6847 2.8653 18 6 -2.1909 -8.1933 4.1208 19 6 -1.4510 -7.7459 5.2043 20 6 -1.7386 -8.2664 6.5890 21 6 -1.0277 -7.5867 7.7611 22 6 -0.6065 -8.9901 7.3210 23 6 -0.4447 -6.8152 5.0019 24 7 -0.1847 -6.3526 3.7985 25 6 1.1918 -5.8454 -1.0489 26 6 2.6049 -5.4758 -1.5418 27 6 2.6980 -3.9458 -1.3287 28 6 1.9331 -3.7264 -0.0005 29 1 2.5738 -3.8803 0.8677 30 1 -0.4850 0.8400 0.0004 31 1 -0.5261 -2.4952 1.0183 32 1 -0.5987 -1.7489 -0.6065 33 1 -0.3358 -3.8965 -1.7368 34 1 -1.3587 -4.3268 -0.3254 35 1 0.9485 -5.0104 2.0471 36 1 -2.4577 -8.0073 1.9996 37 1 -2.9804 -8.9183 4.2527 38 1 -2.7548 -8.6239 6.7552 39 1 -0.3524 -6.7627 7.5306 40 1 -1.5764 -7.4966 8.6986 41 1 -0.8781 -9.8235 7.9690 42 1 0.3462 -9.0898 6.8009 43 1 0.1335 -6.4642 5.8438 44 1 1.1974 -6.8178 -0.5562 45 1 0.5068 -5.8604 -1.8968 46 1 2.7237 -5.7220 -2.5969 47 1 3.3569 -5.9908 -0.9438 48 1 2.2112 -3.4132 -2.1456 49 1 3.7368 -3.6307 -1.2307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992469944.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:44 Heat of formation + Delta-G solvation = 37.421101 kcal Electronic energy + Delta-G solvation = -29952.165084 eV Core-core repulsion = 26072.708535 eV Total energy + Delta-G solvation = -3879.456549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.98109 -41.14238 -39.44046 -37.92244 -36.06476 -34.88247 -33.56926 -33.24101 -32.20454 -31.23960 -28.44701 -27.76925 -25.97567 -25.74472 -24.96691 -23.14884 -23.00868 -21.93508 -21.57188 -21.18988 -20.20603 -19.05996 -18.91061 -17.98873 -17.31265 -16.88524 -16.49978 -16.33276 -16.22171 -15.77632 -15.67884 -15.43693 -15.17487 -14.81381 -14.62643 -14.46534 -14.21839 -13.91778 -13.68385 -13.51080 -13.21368 -12.92165 -12.82603 -12.74255 -12.68102 -12.38210 -12.32481 -12.03480 -11.99174 -11.92354 -11.72148 -11.61443 -11.49926 -11.32581 -11.25619 -11.12648 -10.81526 -10.74706 -10.51756 -10.06256 -9.78272 -8.87875 -7.73744 -5.19197 -0.44786 0.20156 1.47548 1.48239 1.58566 1.64902 2.04702 2.50655 2.69103 3.04360 3.09882 3.34574 3.37631 3.53123 3.62932 3.73050 3.86844 3.87932 3.92557 3.94687 4.00987 4.13345 4.30692 4.32817 4.34870 4.38103 4.45902 4.55923 4.61970 4.68477 4.79363 4.85154 4.86572 4.93377 4.95718 5.04376 5.07366 5.08297 5.15478 5.21174 5.27009 5.27676 5.30747 5.46709 5.50147 5.54453 5.63304 5.65017 5.81427 6.30001 6.41662 6.75758 7.11326 7.14225 7.79355 8.44068 9.27806 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012679 B = 0.002924 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.816077 B = 9574.607358 C =10749.669213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.071 4.071 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.296 1.296 7 C -0.223 4.223 8 H 0.086 0.914 9 N -0.611 5.611 10 C 0.163 3.837 11 C -0.129 4.129 12 C 0.166 3.834 13 N -0.685 5.685 14 C 0.567 3.433 15 O -0.557 6.557 16 C 0.047 3.953 17 C -0.110 4.110 18 C -0.073 4.073 19 C -0.073 4.073 20 C -0.128 4.128 21 C -0.175 4.175 22 C -0.159 4.159 23 C 0.085 3.915 24 N -0.474 5.474 25 C -0.104 4.104 26 C -0.109 4.109 27 C -0.122 4.122 28 C 0.153 3.847 29 H 0.050 0.950 30 H 0.244 0.756 31 H -0.021 1.021 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.410 0.590 36 H 0.151 0.849 37 H 0.177 0.823 38 H 0.136 0.864 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.178 0.822 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.053 0.947 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 -21.521 12.564 24.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.224 1.224 7 C -0.352 4.352 8 H 0.103 0.897 9 N -0.335 5.335 10 C 0.038 3.962 11 C -0.168 4.168 12 C 0.079 3.921 13 N -0.334 5.334 14 C 0.353 3.647 15 O -0.436 6.436 16 C -0.090 4.090 17 C -0.131 4.131 18 C -0.098 4.098 19 C -0.076 4.076 20 C -0.147 4.147 21 C -0.211 4.211 22 C -0.196 4.196 23 C -0.075 4.075 24 N -0.185 5.185 25 C -0.142 4.142 26 C -0.147 4.147 27 C -0.162 4.162 28 C 0.046 3.954 29 H 0.068 0.932 30 H 0.054 0.946 31 H -0.003 1.003 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.246 0.754 36 H 0.169 0.831 37 H 0.194 0.806 38 H 0.154 0.846 39 H 0.116 0.884 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.110 0.890 43 H 0.195 0.805 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.072 0.928 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.079 -20.913 11.698 23.987 hybrid contribution -0.397 1.043 0.437 1.198 sum -1.476 -19.870 12.135 23.329 Atomic orbital electron populations 1.70069 1.06340 1.24680 1.59170 1.25624 0.96512 1.00985 1.03192 0.84985 0.78245 0.79525 0.76447 1.18796 1.22120 1.22374 1.19458 0.91019 0.83263 1.41451 0.89666 1.44699 1.01908 1.00521 1.86338 1.21877 0.84627 0.94144 0.95540 1.23363 0.97476 0.96239 0.99735 1.21605 0.94913 0.92851 0.82706 1.45761 1.35542 1.41692 1.10408 1.18216 0.79679 0.79040 0.87762 1.90724 1.52052 1.61387 1.39440 1.21041 0.96994 0.98695 0.92254 1.22247 0.95828 0.94925 1.00140 1.21773 0.99390 0.98601 0.90081 1.20660 0.95117 0.95611 0.96174 1.21078 0.99711 1.06272 0.87623 1.23207 1.03364 0.96383 0.98172 1.23128 0.97742 0.96344 1.02347 1.23089 0.96402 0.94160 0.93861 1.67514 1.26949 1.24331 0.99727 1.22182 0.97743 0.96758 0.97557 1.22283 0.95710 0.94638 1.02041 1.22770 1.00029 0.96206 0.97233 1.22044 0.92440 0.84057 0.96864 0.93243 0.94599 1.00283 0.90817 0.90780 0.92348 0.75368 0.83129 0.80613 0.84634 0.88399 0.86658 0.86447 0.89001 0.80532 0.91660 0.91447 0.89803 0.90371 0.92819 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.19 10.07 21.65 0.22 -57.97 16 2 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 3 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 7 C -0.22 -12.40 10.03 84.04 0.84 -11.55 16 8 H 0.09 4.50 7.83 -2.91 -0.02 4.48 16 9 N -0.61 -31.57 3.06 -660.87 -2.03 -33.59 16 10 C 0.16 8.65 5.96 87.34 0.52 9.17 16 11 C -0.13 -5.64 5.85 32.37 0.19 -5.45 16 12 C 0.17 6.32 0.71 5.19 0.00 6.32 16 13 N -0.69 -24.81 5.22 -418.30 -2.18 -27.00 16 14 C 0.57 20.08 6.96 86.88 0.61 20.69 16 15 O -0.56 -21.66 14.20 -3.76 -0.05 -21.71 16 16 C 0.05 1.40 6.75 41.91 0.28 1.69 16 17 C -0.11 -2.62 9.63 22.61 0.22 -2.40 16 18 C -0.07 -1.22 9.88 22.45 0.22 -1.00 16 19 C -0.07 -1.22 5.63 -19.70 -0.11 -1.33 16 20 C -0.13 -1.32 6.06 -11.54 -0.07 -1.39 16 21 C -0.17 -1.56 9.87 30.59 0.30 -1.26 16 22 C -0.16 -1.33 10.17 30.59 0.31 -1.02 16 23 C 0.09 1.79 10.47 84.82 0.89 2.68 16 24 N -0.47 -13.35 9.54 -184.91 -1.76 -15.12 16 25 C -0.10 -3.36 5.25 31.18 0.16 -3.20 16 26 C -0.11 -3.07 6.82 31.59 0.22 -2.85 16 27 C -0.12 -4.37 6.27 31.82 0.20 -4.18 16 28 C 0.15 6.33 3.60 46.26 0.17 6.49 16 29 H 0.05 2.03 7.99 -2.39 -0.02 2.01 16 30 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 31 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 32 H 0.07 4.42 5.82 -2.38 -0.01 4.41 16 33 H 0.07 3.16 7.65 -2.39 -0.02 3.14 16 34 H 0.06 2.61 6.80 -2.39 -0.02 2.59 16 35 H 0.41 14.61 7.83 -92.71 -0.73 13.88 16 36 H 0.15 3.43 7.64 -2.91 -0.02 3.40 16 37 H 0.18 1.63 8.06 -2.91 -0.02 1.60 16 38 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 0.95 6.20 -2.39 -0.01 0.94 16 40 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.18 2.88 6.03 -2.91 -0.02 2.86 16 44 H 0.06 2.08 7.42 -2.39 -0.02 2.06 16 45 H 0.07 2.23 7.41 -2.38 -0.02 2.21 16 46 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 48 H 0.05 2.14 8.11 -2.39 -0.02 2.13 16 49 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -71.10 386.59 1.88 -69.22 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.25 Total: 30.09 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 5.41 Total: 7.79 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -5.76 Total: -133.67 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.05 Total: -21.71 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -71.10 1.88 -69.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992469944.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.646 kcal (2) G-P(sol) polarization free energy of solvation -71.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds