Wall clock time and date at job start Sat Apr 11 2020 06:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47421 * 270.00539 * 3 2 1 5 5 H 1.48501 * 109.47182 * 30.00610 * 3 2 1 6 6 H 1.48504 * 109.47012 * 150.00227 * 3 2 1 7 7 C 1.38811 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99849 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00586 * 359.97438 * 7 2 1 10 10 C 1.49302 * 127.10160 * 359.97438 * 9 7 2 11 11 C 1.56224 * 106.50813 * 188.65611 * 10 9 7 12 12 C 1.52134 * 100.81553 * 23.44682 * 11 10 9 13 13 N 1.46505 * 111.09660 * 73.97760 * 12 11 10 14 14 C 1.34776 * 120.00108 * 61.01351 * 13 12 11 15 15 O 1.21516 * 119.99741 * 0.02562 * 14 13 12 16 16 C 1.48162 * 120.00242 * 180.02562 * 14 13 12 17 17 C 1.39314 * 119.72436 * 180.02562 * 16 14 13 18 18 C 1.38584 * 119.05797 * 179.97438 * 17 16 14 19 19 C 1.38623 * 118.49187 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.32575 * 180.02562 * 19 18 17 21 21 C 1.53000 * 117.50175 * 188.62218 * 20 19 18 22 22 C 1.52997 * 60.00347 * 252.51187 * 21 20 19 23 23 C 1.38557 * 119.35130 * 0.27802 * 19 18 17 24 24 N 1.31523 * 120.90389 * 359.42625 * 23 19 18 25 25 C 1.51231 * 122.09624 * 208.15815 * 12 11 10 26 26 C 1.56583 * 104.17905 * 141.04138 * 25 12 11 27 27 C 1.56283 * 106.06982 * 353.42646 * 26 25 12 28 28 C 1.42696 * 127.10928 * 179.97438 * 9 7 2 29 29 H 1.08996 * 108.16266 * 256.51441 * 28 9 7 30 30 H 0.97004 * 119.99926 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.04578 * 69.39140 * 10 9 7 32 32 H 1.09003 * 110.04692 * 307.92306 * 10 9 7 33 33 H 1.08998 * 111.15348 * 265.55789 * 11 10 9 34 34 H 1.09006 * 111.15015 * 141.33526 * 11 10 9 35 35 H 0.97005 * 119.99872 * 241.01974 * 13 12 11 36 36 H 1.07999 * 120.46627 * 359.95003 * 17 16 14 37 37 H 1.08005 * 120.75359 * 180.02562 * 18 17 16 38 38 H 1.09004 * 115.56587 * 334.31023 * 20 19 18 39 39 H 1.09002 * 117.49696 * 0.02562 * 21 20 19 40 40 H 1.09002 * 117.50343 * 145.02291 * 21 20 19 41 41 H 1.08999 * 117.49685 * 252.51237 * 22 21 20 42 42 H 1.08997 * 117.50044 * 107.48590 * 22 21 20 43 43 H 1.08000 * 119.55012 * 179.70453 * 23 19 18 44 44 H 1.09001 * 110.40586 * 260.69548 * 25 12 11 45 45 H 1.09001 * 110.40488 * 23.12019 * 25 12 11 46 46 H 1.09000 * 110.44678 * 234.07487 * 26 25 12 47 47 H 1.08998 * 109.79593 * 112.43044 * 26 25 12 48 48 H 1.08998 * 110.96769 * 217.20146 * 27 26 25 49 49 H 1.09004 * 110.96500 * 93.43927 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1560 -2.5727 0.0005 11 6 -0.4133 -4.0971 0.2255 12 6 0.8811 -4.5068 0.9119 13 7 0.9173 -4.0302 2.2968 14 6 -0.0156 -4.4447 3.1767 15 8 -0.8866 -5.2140 2.8215 16 6 0.0206 -3.9622 4.5772 17 6 -0.9463 -4.3948 5.4820 18 6 -0.8990 -3.9352 6.7886 19 6 0.1144 -3.0591 7.1451 20 6 0.2054 -2.5341 8.5547 21 6 1.2188 -1.4215 8.8302 22 6 1.4818 -2.8394 9.3413 23 6 1.0397 -2.6668 6.1914 24 7 0.9748 -3.1227 4.9595 25 6 1.4390 -5.9083 0.8044 26 6 2.9857 -5.6971 0.6820 27 6 3.2032 -4.1546 0.5570 28 6 1.8806 -3.7027 -0.0016 29 1 1.7895 -4.1092 -1.0088 30 1 -0.4850 0.8401 0.0004 31 1 -0.5721 -2.2609 -0.9574 32 1 -0.6040 -1.9948 0.8089 33 1 -0.5376 -4.6193 -0.7232 34 1 -1.2722 -4.2592 0.8768 35 1 1.6128 -3.4162 2.5804 36 1 -1.7220 -5.0782 5.1695 37 1 -1.6345 -4.2531 7.5128 38 1 -0.7331 -2.5085 9.1086 39 1 1.8194 -1.0689 7.9918 40 1 0.9471 -0.6639 9.5653 41 1 1.3829 -3.0146 10.4126 42 1 2.2556 -3.4200 8.8392 43 1 1.8278 -1.9806 6.4645 44 1 1.1865 -6.4871 1.6929 45 1 1.0601 -6.4005 -0.0913 46 1 3.3703 -6.2037 -0.2032 47 1 3.4818 -6.0752 1.5759 48 1 4.0158 -3.9299 -0.1338 49 1 3.3879 -3.7064 1.5333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992469963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:55 Heat of formation + Delta-G solvation = 68.952564 kcal Electronic energy + Delta-G solvation = -30603.172950 eV Core-core repulsion = 26725.083708 eV Total energy + Delta-G solvation = -3878.089242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.80971 -40.07533 -38.08688 -37.04873 -34.37927 -33.18928 -32.36461 -31.66246 -30.96154 -29.69666 -26.90140 -25.99581 -24.96231 -24.01050 -23.92320 -22.58614 -21.63227 -20.62945 -20.39861 -19.59822 -18.67263 -17.88858 -17.03995 -16.43428 -15.91661 -15.52725 -15.21639 -14.92191 -14.84941 -14.52086 -14.33773 -14.09337 -13.92431 -13.81357 -13.26135 -13.10296 -12.83520 -12.49603 -12.27012 -11.99393 -11.88790 -11.77371 -11.36519 -11.35305 -11.21452 -10.96446 -10.89138 -10.78963 -10.72419 -10.48216 -10.23622 -10.01385 -9.93976 -9.82317 -9.79716 -9.65022 -9.47215 -9.05235 -8.89577 -8.61785 -8.36742 -6.81305 -5.69841 -3.04056 0.66479 1.20971 2.95312 3.40764 3.45792 3.47663 3.52757 3.59510 4.05454 4.12750 4.38920 4.49207 4.52243 4.63547 4.67530 4.75765 4.79679 4.95572 5.16746 5.24795 5.26468 5.31184 5.36073 5.52245 5.55531 5.65049 5.68887 5.71979 5.76153 5.80666 5.86821 5.96019 5.99756 6.04792 6.09601 6.17036 6.30666 6.34806 6.39353 6.46416 6.53198 6.55953 6.73401 6.88965 6.94661 7.23680 7.56316 7.65681 7.75942 7.82888 8.17812 8.24564 8.71207 9.17689 9.84594 10.53695 11.42498 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009124 B = 0.004107 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.946290 B = 6816.300563 C = 8537.072398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.582 5.582 10 C 0.179 3.821 11 C -0.143 4.143 12 C 0.128 3.872 13 N -0.664 5.664 14 C 0.568 3.432 15 O -0.544 6.544 16 C 0.083 3.917 17 C -0.111 4.111 18 C -0.080 4.080 19 C -0.090 4.090 20 C -0.117 4.117 21 C -0.174 4.174 22 C -0.167 4.167 23 C 0.098 3.902 24 N -0.445 5.445 25 C -0.111 4.111 26 C -0.116 4.116 27 C -0.117 4.117 28 C 0.160 3.840 29 H 0.023 0.977 30 H 0.252 0.748 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.412 0.588 36 H 0.148 0.852 37 H 0.139 0.861 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.159 0.841 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 -9.249 15.629 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.305 5.305 10 C 0.056 3.944 11 C -0.181 4.181 12 C 0.040 3.960 13 N -0.314 5.314 14 C 0.352 3.648 15 O -0.423 6.423 16 C -0.055 4.055 17 C -0.132 4.132 18 C -0.106 4.106 19 C -0.092 4.092 20 C -0.136 4.136 21 C -0.211 4.211 22 C -0.204 4.204 23 C -0.062 4.062 24 N -0.156 5.156 25 C -0.150 4.150 26 C -0.154 4.154 27 C -0.155 4.155 28 C 0.050 3.950 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.166 0.834 37 H 0.157 0.843 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.176 0.824 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.870 -9.264 14.661 17.443 hybrid contribution 0.041 1.112 0.787 1.362 sum 1.911 -8.152 15.447 17.571 Atomic orbital electron populations 1.69927 1.04904 1.25012 1.56645 1.24773 0.95584 0.97570 1.02095 0.86176 0.78633 0.83769 0.77510 1.21680 1.21808 1.20681 1.18997 0.90239 0.82278 1.44154 0.90341 1.43643 1.01714 0.99186 1.85984 1.21996 0.83185 0.88638 1.00623 1.22837 0.96728 0.99395 0.99175 1.21637 0.99147 0.93764 0.81486 1.45544 1.29877 1.46784 1.09152 1.17783 0.82095 0.81109 0.83808 1.90714 1.36658 1.36350 1.78556 1.21387 0.92972 0.95768 0.95374 1.22102 0.98900 0.99364 0.92807 1.21357 0.97573 0.95639 0.95987 1.20311 0.96275 0.97426 0.95223 1.20951 0.95533 1.04085 0.93039 1.23104 1.02307 0.91896 1.03808 1.23052 0.98292 0.99057 1.00012 1.22680 0.97987 0.97803 0.87745 1.67657 1.21888 1.07946 1.18095 1.22049 0.95047 0.96032 1.01900 1.22962 0.95593 0.95940 1.00955 1.21864 0.97959 0.94463 1.01228 1.20807 0.91554 0.87464 0.95221 0.96026 0.93788 0.94724 0.91855 0.91674 0.90510 0.75057 0.83418 0.84331 0.86581 0.87981 0.88100 0.88255 0.88422 0.82427 0.91590 0.91068 0.91861 0.92307 0.91677 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.55 55.49 0.59 -26.43 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.22 10.29 -15.06 -0.15 -6.37 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.58 -14.53 3.16 -162.69 -0.51 -15.05 16 10 C 0.18 4.46 5.33 -0.76 0.00 4.46 16 11 C -0.14 -2.96 6.10 -25.44 -0.16 -3.12 16 12 C 0.13 2.43 0.42 -130.71 -0.06 2.37 16 13 N -0.66 -12.79 4.47 -47.41 -0.21 -13.00 16 14 C 0.57 10.79 7.20 -12.18 -0.09 10.70 16 15 O -0.54 -11.09 14.44 5.35 0.08 -11.01 16 16 C 0.08 1.40 6.75 -83.01 -0.56 0.84 16 17 C -0.11 -1.53 9.63 -39.05 -0.38 -1.91 16 18 C -0.08 -0.88 9.88 -39.31 -0.39 -1.27 16 19 C -0.09 -1.00 5.63 -104.36 -0.59 -1.58 16 20 C -0.12 -0.96 6.06 -91.77 -0.56 -1.52 16 21 C -0.17 -1.28 9.87 -26.73 -0.26 -1.55 16 22 C -0.17 -1.17 10.17 -26.73 -0.27 -1.44 16 23 C 0.10 1.28 10.47 -17.57 -0.18 1.09 16 24 N -0.45 -7.26 9.54 -9.80 -0.09 -7.35 16 25 C -0.11 -1.79 6.24 -25.69 -0.16 -1.95 16 26 C -0.12 -1.68 6.95 -23.04 -0.16 -1.84 16 27 C -0.12 -2.00 6.46 -26.21 -0.17 -2.17 16 28 C 0.16 3.29 2.65 -68.73 -0.18 3.11 16 29 H 0.02 0.47 7.98 -51.93 -0.41 0.06 16 30 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.03 0.93 7.98 -51.93 -0.41 0.52 16 32 H 0.06 1.78 7.05 -51.93 -0.37 1.41 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.66 6.27 -51.93 -0.33 1.33 16 35 H 0.41 8.24 6.89 -40.82 -0.28 7.96 16 36 H 0.15 1.92 7.64 -52.49 -0.40 1.52 16 37 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 38 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 0.78 6.19 -51.93 -0.32 0.46 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.16 1.72 6.03 -52.49 -0.32 1.41 16 44 H 0.07 1.08 7.73 -51.93 -0.40 0.68 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.07 1.17 7.17 -51.93 -0.37 0.80 16 LS Contribution 387.04 15.07 5.83 5.83 Total: -1.00 -31.56 387.04 -11.15 -42.71 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -7.39 Total: 9.60 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -4.41 Total: -2.35 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.23 Total: -61.83 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.56 -11.15 -42.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992469963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.665 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds