Wall clock time and date at job start Sat Apr 11 2020 06:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48504 * 109.47059 * 270.00654 * 3 2 1 5 5 H 1.48503 * 109.46979 * 30.00346 * 3 2 1 6 6 H 1.48491 * 109.47019 * 150.00457 * 3 2 1 7 7 C 1.38809 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00402 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00129 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99914 * 179.97438 * 9 7 2 11 11 C 1.53045 * 109.45402 * 155.00032 * 10 9 7 12 12 C 1.53197 * 109.31106 * 181.38416 * 11 10 9 13 13 N 1.46933 * 108.77516 * 305.36528 * 12 11 10 14 14 C 1.34769 * 120.62874 * 233.58537 * 13 12 11 15 15 O 1.21278 * 120.00384 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99926 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.47435 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47466 * 179.97438 * 17 16 14 19 19 C 1.34239 * 126.50397 * 265.00379 * 18 17 16 20 20 N 1.36834 * 109.92851 * 180.02562 * 19 18 17 21 21 H 0.96999 * 125.05933 * 180.02562 * 20 19 18 22 22 C 1.37684 * 109.87550 * 359.97438 * 20 19 18 23 23 C 1.39123 * 133.50709 * 179.97438 * 22 20 19 24 24 C 1.37755 * 119.77684 * 180.02562 * 23 22 20 25 25 C 1.38833 * 120.66853 * 359.97438 * 24 23 22 26 26 C 1.36628 * 120.52451 * 359.97438 * 25 24 23 27 27 C 1.39623 * 119.76540 * 359.97438 * 26 25 24 28 28 C 1.46923 * 118.73806 * 53.86088 * 13 12 11 29 29 C 1.53038 * 109.46076 * 275.06390 * 10 9 7 30 30 H 0.96999 * 119.99703 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99710 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.46016 * 35.03030 * 10 9 7 33 33 H 1.08999 * 109.50032 * 61.43445 * 11 10 9 34 34 H 1.09002 * 109.52590 * 301.34734 * 11 10 9 35 35 H 1.09002 * 109.58805 * 185.57716 * 12 11 10 36 36 H 1.09005 * 109.70295 * 65.21529 * 12 11 10 37 37 H 1.08997 * 109.47684 * 59.99834 * 16 14 13 38 38 H 1.09008 * 109.47192 * 299.99804 * 16 14 13 39 39 H 1.09004 * 109.47397 * 59.99907 * 17 16 14 40 40 H 1.08998 * 109.47265 * 299.99811 * 17 16 14 41 41 H 1.07992 * 125.03293 * 359.97360 * 19 18 17 42 42 H 1.07996 * 120.11326 * 0.31780 * 23 22 20 43 43 H 1.08001 * 119.66142 * 179.97438 * 24 23 22 44 44 H 1.07992 * 119.73662 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.11150 * 179.97438 * 26 25 24 46 46 H 1.08993 * 109.59238 * 65.92597 * 28 13 12 47 47 H 1.08995 * 109.58849 * 186.35506 * 28 13 12 48 48 H 1.09004 * 109.49871 * 298.57204 * 29 10 9 49 49 H 1.08995 * 109.49619 * 58.63659 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.4994 -2.2586 -0.6115 12 6 6.2494 -3.5941 -0.6416 13 7 6.2669 -4.1573 0.7154 14 6 7.4293 -4.5187 1.2938 15 8 8.4740 -4.3807 0.6936 16 6 7.4307 -5.0955 2.6861 17 6 8.8669 -5.4193 3.1026 18 6 8.8684 -5.9954 4.4951 19 6 9.0670 -5.3205 5.6383 20 7 8.9974 -6.1766 6.7035 21 1 9.1083 -5.9204 7.6324 22 6 8.7453 -7.4556 6.2603 23 6 8.5825 -8.6779 6.9046 24 6 8.3340 -9.8133 6.1652 25 6 8.2433 -9.7513 4.7812 26 6 8.3989 -8.5613 4.1282 27 6 8.6504 -7.3978 4.8580 28 6 4.9926 -4.3247 1.4273 29 6 4.2572 -2.9759 1.4363 30 1 -0.4850 0.8401 0.0004 31 1 3.8647 -0.3621 -0.0014 32 1 3.5646 -3.2063 -0.5906 33 1 6.0566 -1.5420 -0.0082 34 1 5.3959 -1.8766 -1.6271 35 1 7.2717 -3.4315 -0.9830 36 1 5.7439 -4.2843 -1.3171 37 1 6.8339 -6.0074 2.7023 38 1 7.0055 -4.3705 3.3802 39 1 9.4643 -4.5076 3.0863 40 1 9.2918 -6.1444 2.4085 41 1 9.2549 -4.2593 5.7071 42 1 8.6461 -8.7356 7.9812 43 1 8.2084 -10.7612 6.6673 44 1 8.0484 -10.6508 4.2164 45 1 8.3274 -8.5208 3.0513 46 1 4.3846 -5.0720 0.9176 47 1 5.1854 -4.6441 2.4514 48 1 4.8261 -2.2524 2.0204 49 1 3.2692 -3.1039 1.8784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997256565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:06 Heat of formation + Delta-G solvation = 27.276025 kcal Electronic energy + Delta-G solvation = -28700.501748 eV Core-core repulsion = 24820.605276 eV Total energy + Delta-G solvation = -3879.896473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53604 -40.05515 -37.53425 -37.16550 -34.61213 -34.35900 -32.14841 -31.44375 -30.70347 -29.82767 -29.57055 -28.66836 -25.47123 -24.14378 -23.10125 -22.94791 -22.05054 -22.01562 -20.32573 -19.56077 -18.82923 -18.10926 -17.53781 -16.89741 -16.66803 -15.80315 -15.71587 -15.53703 -14.85041 -14.73780 -14.42621 -14.13016 -14.11508 -13.88721 -13.80737 -13.50322 -13.31377 -12.99015 -12.68863 -12.60171 -12.36590 -12.17513 -12.01065 -11.90048 -11.87934 -11.83378 -11.22898 -11.06606 -11.00315 -10.91867 -10.87035 -10.57246 -10.26551 -9.91822 -9.86851 -9.62402 -9.61004 -8.95302 -8.51059 -8.48102 -7.89907 -7.31033 -5.80405 -3.16190 0.86941 1.37769 2.38426 2.71747 2.84139 3.14052 3.35283 3.38629 3.43330 3.66959 4.44363 4.48877 4.56190 4.56249 4.78648 4.87097 4.96186 4.99131 5.05778 5.09169 5.15678 5.21010 5.27080 5.35325 5.36903 5.44658 5.49423 5.55106 5.62112 5.64722 5.66169 5.72223 5.86049 5.94688 5.99417 6.04450 6.09583 6.16758 6.24727 6.28831 6.36605 6.38022 6.46121 6.53819 6.55907 6.80034 6.90689 6.92901 7.23616 7.52186 7.95351 8.26149 8.38783 9.17019 9.89887 10.09709 11.37788 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.002084 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.215206 B =13433.285379 C =13810.924591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.749 5.749 10 C 0.183 3.817 11 C -0.142 4.142 12 C 0.116 3.884 13 N -0.608 5.608 14 C 0.514 3.486 15 O -0.552 6.552 16 C -0.133 4.133 17 C -0.027 4.027 18 C -0.166 4.166 19 C 0.053 3.947 20 N -0.597 5.597 21 H 0.415 0.585 22 C 0.094 3.906 23 C -0.133 4.133 24 C -0.100 4.100 25 C -0.149 4.149 26 C -0.068 4.068 27 C -0.101 4.101 28 C 0.107 3.893 29 C -0.151 4.151 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.170 0.830 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.804 -17.442 13.168 29.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.073 3.927 11 C -0.181 4.181 12 C -0.007 4.007 13 N -0.342 5.342 14 C 0.302 3.698 15 O -0.431 6.431 16 C -0.173 4.173 17 C -0.065 4.065 18 C -0.173 4.173 19 C -0.073 4.073 20 N -0.199 5.199 21 H 0.252 0.748 22 C -0.013 4.013 23 C -0.153 4.153 24 C -0.119 4.119 25 C -0.168 4.168 26 C -0.087 4.087 27 C -0.106 4.106 28 C -0.017 4.017 29 C -0.192 4.192 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.187 0.813 42 H 0.136 0.864 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.077 0.923 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.100 -17.342 12.944 29.535 hybrid contribution 0.325 1.477 0.670 1.654 sum 20.425 -15.866 13.614 29.227 Atomic orbital electron populations 1.69703 1.05093 1.25841 1.57468 1.24679 0.95233 0.97228 1.02019 0.86554 0.79167 0.85005 0.77804 1.21072 1.21789 1.20388 1.19067 0.80548 0.94674 1.43058 0.89169 1.42809 1.04014 1.02004 1.90223 1.20145 0.90241 0.89361 0.92909 1.22240 0.97171 0.96589 1.02108 1.21572 1.01875 0.94572 0.82669 1.48216 1.06793 1.62261 1.16880 1.20713 0.83091 0.77654 0.88318 1.90662 1.31267 1.55688 1.65444 1.21688 0.99481 1.02350 0.93777 1.19617 0.94972 1.01070 0.90872 1.20286 1.10750 0.91502 0.94802 1.21676 1.04100 0.95788 0.85749 1.41733 1.63483 1.05823 1.08867 0.74838 1.18273 1.03387 0.85935 0.93664 1.20018 1.06131 0.89968 0.99221 1.20806 0.99765 0.97321 0.94038 1.20644 1.03963 0.97734 0.94433 1.20320 0.97920 0.90887 0.99560 1.19115 1.05865 0.93607 0.91989 1.21959 0.84061 0.98944 0.96711 1.22707 1.00472 0.94781 1.01208 0.93055 0.80665 0.92506 0.92014 0.90550 0.89353 0.91512 0.88961 0.88929 0.90538 0.90498 0.81256 0.86445 0.85893 0.86076 0.86040 0.91252 0.90214 0.92324 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.87 13.97 55.49 0.78 -28.09 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 21.88 27.73 -169.99 -4.71 17.17 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 7 C -0.24 -6.65 10.41 -15.06 -0.16 -6.81 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16 9 N -0.75 -17.09 4.92 -53.39 -0.26 -17.35 16 10 C 0.18 3.30 2.73 -67.89 -0.19 3.12 16 11 C -0.14 -2.18 5.55 -26.61 -0.15 -2.33 16 12 C 0.12 1.58 6.43 -3.70 -0.02 1.56 16 13 N -0.61 -8.03 2.97 -172.50 -0.51 -8.54 16 14 C 0.51 6.86 7.70 -10.99 -0.08 6.78 16 15 O -0.55 -9.05 15.39 5.56 0.09 -8.97 16 16 C -0.13 -1.35 4.03 -27.88 -0.11 -1.46 16 17 C -0.03 -0.27 5.03 -27.88 -0.14 -0.41 16 18 C -0.17 -1.61 5.57 -102.71 -0.57 -2.18 16 19 C 0.05 0.42 11.73 -16.73 -0.20 0.22 16 20 N -0.60 -4.38 6.07 -10.65 -0.06 -4.44 16 21 H 0.42 1.79 8.96 -40.82 -0.37 1.43 16 22 C 0.09 0.89 7.28 -83.99 -0.61 0.27 16 23 C -0.13 -1.08 10.08 -39.43 -0.40 -1.48 16 24 C -0.10 -0.78 10.01 -39.54 -0.40 -1.18 16 25 C -0.15 -1.24 9.97 -39.94 -0.40 -1.64 16 26 C -0.07 -0.65 10.05 -39.65 -0.40 -1.05 16 27 C -0.10 -1.05 6.35 -105.14 -0.67 -1.72 16 28 C 0.11 1.30 6.37 -3.48 -0.02 1.28 16 29 C -0.15 -2.37 5.67 -26.38 -0.15 -2.52 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.36 8.22 5.66 -40.82 -0.23 7.99 16 32 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.25 7.01 -51.93 -0.36 0.88 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.86 7.93 -51.93 -0.41 0.45 16 38 H 0.09 0.87 7.70 -51.92 -0.40 0.47 16 39 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 41 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 48 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -34.19 395.25 -11.08 -45.27 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.58 Total: 8.54 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -4.76 Total: -9.53 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.06 Total: -58.43 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.19 -11.08 -45.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997256565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.542 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds