Wall clock time and date at job start Sat Apr 11 2020 06:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48504 * 109.47059 * 270.00654 * 3 2 1 5 5 H 1.48503 * 109.46979 * 30.00346 * 3 2 1 6 6 H 1.48491 * 109.47019 * 150.00457 * 3 2 1 7 7 C 1.38809 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00402 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00129 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99914 * 179.97438 * 9 7 2 11 11 C 1.53045 * 109.45402 * 155.00032 * 10 9 7 12 12 C 1.53197 * 109.31106 * 181.38416 * 11 10 9 13 13 N 1.46933 * 108.77516 * 305.36528 * 12 11 10 14 14 C 1.34769 * 120.62874 * 233.58537 * 13 12 11 15 15 O 1.21278 * 120.00384 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99926 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.47435 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47466 * 179.97438 * 17 16 14 19 19 C 1.34239 * 126.50397 * 265.00379 * 18 17 16 20 20 N 1.36834 * 109.92851 * 180.02562 * 19 18 17 21 21 H 0.96999 * 125.05933 * 180.02562 * 20 19 18 22 22 C 1.37684 * 109.87550 * 359.97438 * 20 19 18 23 23 C 1.39123 * 133.50709 * 179.97438 * 22 20 19 24 24 C 1.37755 * 119.77684 * 180.02562 * 23 22 20 25 25 C 1.38833 * 120.66853 * 359.97438 * 24 23 22 26 26 C 1.36628 * 120.52451 * 359.97438 * 25 24 23 27 27 C 1.39623 * 119.76540 * 359.97438 * 26 25 24 28 28 C 1.46923 * 118.73806 * 53.86088 * 13 12 11 29 29 C 1.53038 * 109.46076 * 275.06390 * 10 9 7 30 30 H 0.96999 * 119.99703 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99710 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.46016 * 35.03030 * 10 9 7 33 33 H 1.08999 * 109.50032 * 61.43445 * 11 10 9 34 34 H 1.09002 * 109.52590 * 301.34734 * 11 10 9 35 35 H 1.09002 * 109.58805 * 185.57716 * 12 11 10 36 36 H 1.09005 * 109.70295 * 65.21529 * 12 11 10 37 37 H 1.08997 * 109.47684 * 59.99834 * 16 14 13 38 38 H 1.09008 * 109.47192 * 299.99804 * 16 14 13 39 39 H 1.09004 * 109.47397 * 59.99907 * 17 16 14 40 40 H 1.08998 * 109.47265 * 299.99811 * 17 16 14 41 41 H 1.07992 * 125.03293 * 359.97360 * 19 18 17 42 42 H 1.07996 * 120.11326 * 0.31780 * 23 22 20 43 43 H 1.08001 * 119.66142 * 179.97438 * 24 23 22 44 44 H 1.07992 * 119.73662 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.11150 * 179.97438 * 26 25 24 46 46 H 1.08993 * 109.59238 * 65.92597 * 28 13 12 47 47 H 1.08995 * 109.58849 * 186.35506 * 28 13 12 48 48 H 1.09004 * 109.49871 * 298.57204 * 29 10 9 49 49 H 1.08995 * 109.49619 * 58.63659 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.4994 -2.2586 -0.6115 12 6 6.2494 -3.5941 -0.6416 13 7 6.2669 -4.1573 0.7154 14 6 7.4293 -4.5187 1.2938 15 8 8.4740 -4.3807 0.6936 16 6 7.4307 -5.0955 2.6861 17 6 8.8669 -5.4193 3.1026 18 6 8.8684 -5.9954 4.4951 19 6 9.0670 -5.3205 5.6383 20 7 8.9974 -6.1766 6.7035 21 1 9.1083 -5.9204 7.6324 22 6 8.7453 -7.4556 6.2603 23 6 8.5825 -8.6779 6.9046 24 6 8.3340 -9.8133 6.1652 25 6 8.2433 -9.7513 4.7812 26 6 8.3989 -8.5613 4.1282 27 6 8.6504 -7.3978 4.8580 28 6 4.9926 -4.3247 1.4273 29 6 4.2572 -2.9759 1.4363 30 1 -0.4850 0.8401 0.0004 31 1 3.8647 -0.3621 -0.0014 32 1 3.5646 -3.2063 -0.5906 33 1 6.0566 -1.5420 -0.0082 34 1 5.3959 -1.8766 -1.6271 35 1 7.2717 -3.4315 -0.9830 36 1 5.7439 -4.2843 -1.3171 37 1 6.8339 -6.0074 2.7023 38 1 7.0055 -4.3705 3.3802 39 1 9.4643 -4.5076 3.0863 40 1 9.2918 -6.1444 2.4085 41 1 9.2549 -4.2593 5.7071 42 1 8.6461 -8.7356 7.9812 43 1 8.2084 -10.7612 6.6673 44 1 8.0484 -10.6508 4.2164 45 1 8.3274 -8.5208 3.0513 46 1 4.3846 -5.0720 0.9176 47 1 5.1854 -4.6441 2.4514 48 1 4.8261 -2.2524 2.0204 49 1 3.2692 -3.1039 1.8784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997256565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:05 Heat of formation + Delta-G solvation = 7.251304 kcal Electronic energy + Delta-G solvation = -28701.370085 eV Core-core repulsion = 24820.605276 eV Total energy + Delta-G solvation = -3880.764810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.14315 -41.15429 -38.82441 -37.76618 -36.22212 -35.13884 -33.91457 -32.47616 -31.64727 -31.42748 -30.19294 -29.40195 -26.78572 -25.32243 -24.28795 -23.70442 -23.47238 -22.62645 -21.68775 -20.32352 -20.04192 -19.35669 -18.73169 -17.95360 -17.29142 -16.81711 -16.69894 -16.59296 -16.24463 -15.85766 -15.40989 -15.22547 -15.01489 -14.99715 -14.79522 -14.64357 -14.54361 -14.33491 -13.91360 -13.65500 -13.34329 -13.25886 -13.12342 -12.93208 -12.90288 -12.63204 -12.52040 -12.49637 -12.16880 -12.12040 -11.95714 -11.91435 -11.77466 -11.56686 -11.32141 -10.98667 -10.75684 -10.43785 -9.64094 -9.29593 -9.10033 -8.51310 -8.00794 -5.33642 0.25828 0.74943 1.38412 1.40658 1.47852 1.67444 1.73373 2.11100 2.32562 2.49155 3.03330 3.30367 3.51383 3.60217 3.85747 3.90259 3.96502 4.06544 4.17066 4.18199 4.24988 4.28397 4.34022 4.39405 4.42490 4.51184 4.58201 4.62560 4.67722 4.76086 4.80697 4.84981 4.87053 4.93997 5.00834 5.03296 5.08611 5.11358 5.24636 5.30426 5.34723 5.48829 5.63408 5.64398 5.75542 5.79498 5.84496 5.89534 6.23506 6.29983 6.47010 6.76141 7.09356 7.21110 7.86209 8.04428 9.20560 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.002084 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.215206 B =13433.285379 C =13810.924591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.952 3.048 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.255 1.255 7 C -0.223 4.223 8 H 0.061 0.939 9 N -0.753 5.753 10 C 0.175 3.825 11 C -0.130 4.130 12 C 0.120 3.880 13 N -0.610 5.610 14 C 0.513 3.487 15 O -0.585 6.585 16 C -0.124 4.124 17 C -0.017 4.017 18 C -0.192 4.192 19 C 0.063 3.937 20 N -0.588 5.588 21 H 0.429 0.571 22 C 0.076 3.924 23 C -0.137 4.137 24 C -0.108 4.108 25 C -0.154 4.154 26 C -0.090 4.090 27 C -0.125 4.125 28 C 0.116 3.884 29 C -0.142 4.142 30 H 0.256 0.744 31 H 0.363 0.637 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.197 0.803 42 H 0.139 0.861 43 H 0.146 0.854 44 H 0.137 0.863 45 H 0.121 0.879 46 H 0.080 0.920 47 H 0.108 0.892 48 H 0.056 0.944 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.653 -17.933 14.781 31.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.780 3.220 4 H -0.207 1.207 5 H -0.225 1.225 6 H -0.179 1.179 7 C -0.354 4.354 8 H 0.079 0.921 9 N -0.396 5.396 10 C 0.067 3.933 11 C -0.169 4.169 12 C -0.003 4.003 13 N -0.342 5.342 14 C 0.303 3.697 15 O -0.465 6.465 16 C -0.163 4.163 17 C -0.055 4.055 18 C -0.199 4.199 19 C -0.064 4.064 20 N -0.191 5.191 21 H 0.268 0.732 22 C -0.032 4.032 23 C -0.158 4.158 24 C -0.127 4.127 25 C -0.173 4.173 26 C -0.109 4.109 27 C -0.130 4.130 28 C -0.007 4.007 29 C -0.183 4.183 30 H 0.065 0.935 31 H 0.196 0.804 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.214 0.786 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.155 0.845 45 H 0.139 0.861 46 H 0.099 0.901 47 H 0.126 0.874 48 H 0.074 0.926 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.001 -17.875 14.587 31.880 hybrid contribution -0.230 1.495 0.174 1.522 sum 21.771 -16.381 14.761 30.987 Atomic orbital electron populations 1.69878 1.07020 1.26490 1.60078 1.25461 0.96056 1.01066 1.03120 0.85449 0.78545 0.80063 0.77923 1.20709 1.22531 1.17941 1.19028 0.82504 0.93389 1.40461 0.92109 1.42853 1.02504 1.03937 1.90261 1.20411 0.91098 0.87237 0.94578 1.22101 0.95329 0.97638 1.01854 1.21499 1.01488 0.93892 0.83437 1.48286 1.07164 1.62063 1.16705 1.21247 0.82388 0.76933 0.89136 1.90651 1.32388 1.57049 1.66455 1.21683 0.99976 1.02893 0.91790 1.19445 0.94668 1.00338 0.91071 1.20273 1.13021 0.91657 0.94998 1.22090 1.02105 0.96856 0.85307 1.41764 1.62603 1.05143 1.09621 0.73158 1.18530 1.04042 0.86995 0.93607 1.20348 1.05343 0.89625 1.00434 1.21151 0.99233 0.98357 0.93944 1.20927 1.03293 0.97938 0.95104 1.20484 0.99131 0.91463 0.99812 1.19401 1.06549 0.94127 0.92880 1.21946 0.83351 0.96902 0.98522 1.22505 1.00075 0.96752 0.98922 0.93487 0.80423 0.93349 0.92280 0.90353 0.89620 0.90282 0.87820 0.87443 0.90988 0.92151 0.78624 0.84344 0.83584 0.84537 0.86069 0.90135 0.87402 0.92561 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.35 13.97 21.65 0.30 -62.05 16 2 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 3 Si 0.95 45.22 27.73 68.60 1.90 47.12 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 7 C -0.22 -12.29 10.41 84.03 0.87 -11.41 16 8 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 9 N -0.75 -33.78 4.92 -322.82 -1.59 -35.37 16 10 C 0.17 6.12 2.73 45.02 0.12 6.24 16 11 C -0.13 -3.79 5.55 30.68 0.17 -3.62 16 12 C 0.12 3.06 6.43 86.36 0.56 3.62 16 13 N -0.61 -14.82 2.97 -818.06 -2.43 -17.25 16 14 C 0.51 12.82 7.70 87.66 0.67 13.50 16 15 O -0.58 -18.64 15.39 -3.02 -0.05 -18.68 16 16 C -0.12 -2.27 4.03 29.85 0.12 -2.15 16 17 C -0.02 -0.32 5.03 29.85 0.15 -0.17 16 18 C -0.19 -3.48 5.57 -18.62 -0.10 -3.59 16 19 C 0.06 0.86 11.73 83.00 0.97 1.83 16 20 N -0.59 -7.36 6.07 -187.61 -1.14 -8.50 16 21 H 0.43 2.65 8.96 -92.71 -0.83 1.82 16 22 C 0.08 1.30 7.28 39.03 0.28 1.59 16 23 C -0.14 -1.97 10.08 22.37 0.23 -1.75 16 24 C -0.11 -1.49 10.01 22.30 0.22 -1.26 16 25 C -0.15 -2.40 9.97 22.04 0.22 -2.18 16 26 C -0.09 -1.70 10.05 22.23 0.22 -1.47 16 27 C -0.12 -2.49 6.35 -20.20 -0.13 -2.62 16 28 C 0.12 2.55 6.37 86.51 0.55 3.10 16 29 C -0.14 -4.26 5.67 30.82 0.17 -4.08 16 30 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.36 15.92 5.66 -92.71 -0.52 15.39 16 32 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.09 2.30 7.01 -2.39 -0.02 2.28 16 36 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.10 1.70 7.93 -2.39 -0.02 1.68 16 38 H 0.11 1.69 7.70 -2.38 -0.02 1.67 16 39 H 0.07 1.41 8.10 -2.38 -0.02 1.39 16 40 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 41 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 44 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 45 H 0.12 2.11 8.06 -2.91 -0.02 2.08 16 46 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.11 1.83 5.93 -2.39 -0.01 1.81 16 48 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 49 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -75.03 395.25 2.33 -72.69 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -0.45 Total: 29.83 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.78 Total: -7.79 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -4.85 Total: -123.17 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.05 Total: -18.68 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.90 Total: 47.12 kcal Total: -75.03 2.33 -72.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997256565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.943 kcal (2) G-P(sol) polarization free energy of solvation -75.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds