Wall clock time and date at job start Sat Apr 11 2020 06:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00058 * 2 1 4 4 H 1.48493 * 109.47137 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47151 * 300.00601 * 3 2 1 6 6 H 1.48498 * 109.47004 * 60.00293 * 3 2 1 7 7 C 1.38811 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00441 * 164.51089 * 7 2 1 9 9 N 1.36940 * 119.99826 * 344.51030 * 7 2 1 10 10 C 1.47008 * 121.37445 * 335.97258 * 9 7 2 11 11 C 1.50321 * 109.16780 * 222.96864 * 10 9 7 12 12 C 1.29462 * 123.64706 * 349.02525 * 11 10 9 13 13 C 1.50699 * 117.69050 * 180.85848 * 12 11 10 14 14 N 1.46494 * 109.47422 * 94.99843 * 13 12 11 15 15 C 1.34777 * 120.00380 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99815 * 359.97438 * 15 14 13 17 17 C 1.50695 * 120.00156 * 180.02562 * 15 14 13 18 18 H 1.08995 * 109.22726 * 60.53469 * 17 15 14 19 19 C 1.52727 * 109.26026 * 179.97438 * 17 15 14 20 20 C 1.53323 * 108.60975 * 171.74286 * 19 17 15 21 21 C 1.52766 * 108.37206 * 290.06150 * 20 19 17 22 22 C 1.50486 * 110.56914 * 50.81114 * 21 20 19 23 23 C 1.39196 * 117.98296 * 162.47349 * 22 21 20 24 24 C 1.38403 * 118.87066 * 179.73617 * 23 22 21 25 25 C 1.38253 * 118.84213 * 359.96075 * 24 23 22 26 26 N 1.31503 * 120.61136 * 0.13784 * 25 24 23 27 27 C 1.32705 * 122.39861 * 0.02562 * 26 25 24 28 28 C 1.49961 * 124.61140 * 1.13304 * 12 11 10 29 29 C 1.47339 * 121.37537 * 155.99552 * 9 7 2 30 30 H 0.97003 * 119.99960 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.52247 * 103.06043 * 10 9 7 32 32 H 1.09001 * 109.52264 * 342.87884 * 10 9 7 33 33 H 1.07998 * 118.17617 * 169.04528 * 11 10 9 34 34 H 1.09007 * 109.46866 * 334.99584 * 13 12 11 35 35 H 1.09005 * 109.46992 * 215.00123 * 13 12 11 36 36 H 0.97006 * 119.99634 * 359.97438 * 14 13 12 37 37 H 1.09001 * 109.63488 * 51.95692 * 19 17 15 38 38 H 1.08995 * 109.64213 * 291.53522 * 19 17 15 39 39 H 1.08997 * 109.68595 * 49.78787 * 20 19 17 40 40 H 1.08997 * 109.68123 * 170.34311 * 20 19 17 41 41 H 1.09002 * 109.25429 * 171.08594 * 21 20 19 42 42 H 1.08993 * 109.26134 * 290.52237 * 21 20 19 43 43 H 1.07998 * 120.55963 * 359.70988 * 23 22 21 44 44 H 1.07993 * 120.57996 * 179.97438 * 24 23 22 45 45 H 1.08002 * 119.68891 * 180.16547 * 25 24 23 46 46 H 1.09003 * 109.31665 * 101.01107 * 28 12 11 47 47 H 1.09002 * 109.31468 * 220.43895 * 28 12 11 48 48 H 1.08998 * 109.77680 * 237.78625 * 29 9 7 49 49 H 1.09001 * 109.77701 * 358.53791 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0608 -1.2190 -0.2503 9 7 1.3629 -2.3667 0.3157 10 6 0.1445 -2.3660 1.1383 11 6 0.2247 -3.4838 2.1401 12 6 1.1205 -4.4177 2.1026 13 6 1.0641 -5.4852 3.1648 14 7 0.3203 -6.6406 2.6570 15 6 0.1417 -7.7238 3.4388 16 8 0.5972 -7.7422 4.5626 17 6 -0.6229 -8.9126 2.9161 18 1 -0.1140 -9.3086 2.0373 19 6 -0.6762 -9.9916 3.9957 20 6 -1.6260 -11.1020 3.5312 21 6 -3.0529 -10.5567 3.5564 22 6 -3.1310 -9.2459 2.8214 23 6 -4.3860 -8.7940 2.4235 24 6 -4.4797 -7.5879 1.7512 25 6 -3.3234 -6.8734 1.4988 26 7 -2.1542 -7.3324 1.8881 27 6 -2.0214 -8.4852 2.5321 28 6 2.2138 -4.5088 1.0803 29 6 1.8590 -3.6721 -0.1541 30 1 -0.4850 0.8401 0.0004 31 1 -0.7265 -2.5114 0.4993 32 1 0.0586 -1.4135 1.6613 33 1 -0.5058 -3.5094 2.9351 34 1 0.5638 -5.0913 4.0496 35 1 2.0770 -5.7915 3.4263 36 1 -0.0437 -6.6260 1.7579 37 1 -1.0440 -9.5604 4.9267 38 1 0.3208 -10.4036 4.1514 39 1 -1.3671 -11.4063 2.5171 40 1 -1.5477 -11.9568 4.2029 41 1 -3.7207 -11.2755 3.0814 42 1 -3.3628 -10.4081 4.5907 43 1 -5.2714 -9.3749 2.6356 44 1 -5.4394 -7.2114 1.4295 45 1 -3.3810 -5.9293 0.9775 46 1 3.1442 -4.1418 1.5137 47 1 2.3437 -5.5494 0.7830 48 1 1.0846 -4.1738 -0.7343 49 1 2.7469 -3.5293 -0.7700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001075883.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:42 Heat of formation + Delta-G solvation = 27.387988 kcal Electronic energy + Delta-G solvation = -29740.382033 eV Core-core repulsion = 25860.490415 eV Total energy + Delta-G solvation = -3879.891618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16956 -39.31541 -37.74288 -36.60682 -34.77458 -33.71806 -32.66618 -30.92743 -30.64791 -30.18556 -29.62490 -26.93026 -25.00297 -24.06884 -23.51109 -23.01425 -22.60137 -21.04243 -20.56285 -19.86472 -17.74595 -17.37338 -16.83433 -16.71965 -15.92345 -15.78078 -15.47628 -15.09310 -14.82690 -14.48196 -14.21778 -14.03666 -13.89958 -13.65440 -13.53459 -13.32277 -13.20135 -13.03483 -12.70621 -12.61043 -12.21382 -12.14483 -11.90493 -11.53432 -11.46292 -11.27702 -11.20551 -10.89762 -10.87224 -10.73074 -10.34803 -10.26219 -10.03271 -9.82161 -9.80161 -9.58143 -9.52395 -8.97322 -8.70585 -8.64996 -7.97669 -6.72211 -5.78300 -3.16721 0.84780 1.01879 2.70923 2.76756 3.38606 3.46346 3.48310 3.48576 3.74849 3.94367 4.21639 4.45553 4.50761 4.51374 4.63367 4.71108 4.83771 4.96546 5.08157 5.13113 5.17599 5.26828 5.35663 5.40083 5.45536 5.47117 5.49153 5.55936 5.62698 5.67684 5.81381 5.92137 5.93996 6.01120 6.04328 6.05841 6.14124 6.23862 6.39247 6.45291 6.55257 6.73872 6.79009 6.91746 7.23024 7.31352 7.39502 7.75847 7.76374 7.85886 7.87702 8.39754 8.46772 9.21343 9.84211 10.42527 11.32104 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.002594 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.628865 B =10790.565822 C =11790.380890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.002 4.002 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.196 3.804 11 C -0.124 4.124 12 C -0.162 4.162 13 C 0.157 3.843 14 N -0.700 5.700 15 C 0.522 3.478 16 O -0.554 6.554 17 C -0.055 4.055 18 H 0.112 0.888 19 C -0.100 4.100 20 C -0.121 4.121 21 C -0.078 4.078 22 C -0.121 4.121 23 C -0.078 4.078 24 C -0.172 4.172 25 C 0.112 3.888 26 N -0.481 5.481 27 C 0.135 3.865 28 C -0.089 4.089 29 C 0.145 3.855 30 H 0.253 0.747 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.412 0.588 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.161 0.839 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.023 0.977 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.863 -22.967 4.911 25.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.145 4.145 12 C -0.163 4.163 13 C 0.034 3.966 14 N -0.352 5.352 15 C 0.307 3.693 16 O -0.433 6.433 17 C -0.077 4.077 18 H 0.130 0.870 19 C -0.138 4.138 20 C -0.158 4.158 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.104 4.104 24 C -0.192 4.192 25 C -0.048 4.048 26 N -0.190 5.190 27 C 0.000 4.000 28 C -0.128 4.128 29 C 0.018 3.982 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.250 0.750 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.151 0.849 44 H 0.154 0.846 45 H 0.179 0.821 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.041 0.959 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.860 -22.302 5.505 24.279 hybrid contribution -0.781 0.595 -0.250 1.013 sum -8.641 -21.708 5.255 23.948 Atomic orbital electron populations 1.70021 1.05155 1.25319 1.55009 1.24980 0.95398 0.98261 1.01353 0.86191 0.79273 0.83928 0.77224 1.20320 1.21788 1.21616 1.19229 0.92239 0.84363 1.41456 0.91350 1.44139 1.29246 1.01197 1.57286 1.19727 0.88704 0.94718 0.89717 1.23212 0.95839 0.96735 0.98713 1.20460 0.99824 0.97054 0.98924 1.20425 0.95863 0.84883 0.95465 1.46244 1.54783 1.15270 1.18905 1.20106 0.79933 0.83855 0.85434 1.90675 1.51165 1.82017 1.19393 1.20279 0.91224 0.95336 1.00880 0.87016 1.21405 1.00842 0.93978 0.97606 1.21603 0.93978 0.98064 1.02182 1.20448 0.98201 0.92803 1.00095 1.20377 0.93201 0.98225 1.00500 1.21582 0.97076 0.95892 0.95847 1.22166 1.00507 0.96000 1.00493 1.22767 0.87198 0.99281 0.95520 1.67373 1.28459 1.12753 1.10392 1.20672 0.93927 0.90512 0.94903 1.20773 0.96553 0.98976 0.96526 1.20981 0.97265 0.87161 0.92779 0.93718 0.94239 0.89058 0.89022 0.92121 0.91880 0.75015 0.90382 0.90173 0.91351 0.90604 0.90472 0.90218 0.84873 0.84583 0.82131 0.91813 0.92963 0.95858 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.20 11.08 55.49 0.61 -25.58 16 2 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 3 Si 0.90 21.82 29.58 -169.99 -5.03 16.79 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.70 9.71 -15.06 -0.15 -6.84 16 8 H 0.07 1.85 7.88 -52.49 -0.41 1.44 16 9 N -0.60 -14.97 3.01 -173.56 -0.52 -15.49 16 10 C 0.20 4.69 5.23 -5.10 -0.03 4.66 16 11 C -0.12 -2.46 9.47 -35.78 -0.34 -2.79 16 12 C -0.16 -2.92 5.22 -101.00 -0.53 -3.45 16 13 C 0.16 2.57 5.66 -5.20 -0.03 2.54 16 14 N -0.70 -10.44 4.96 -61.47 -0.31 -10.75 16 15 C 0.52 7.73 7.07 -10.99 -0.08 7.65 16 16 O -0.55 -9.90 15.83 5.56 0.09 -9.81 16 17 C -0.06 -0.62 2.72 -92.82 -0.25 -0.87 16 18 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 19 C -0.10 -0.94 4.63 -26.70 -0.12 -1.06 16 20 C -0.12 -0.80 5.99 -26.68 -0.16 -0.96 16 21 C -0.08 -0.52 5.68 -28.11 -0.16 -0.68 16 22 C -0.12 -1.13 5.74 -104.60 -0.60 -1.73 16 23 C -0.08 -0.64 9.75 -39.16 -0.38 -1.02 16 24 C -0.17 -1.49 10.12 -39.52 -0.40 -1.89 16 25 C 0.11 1.20 11.19 -17.69 -0.20 1.01 16 26 N -0.48 -6.01 7.60 -9.36 -0.07 -6.08 16 27 C 0.14 1.54 6.22 -82.20 -0.51 1.03 16 28 C -0.09 -1.61 5.95 -28.09 -0.17 -1.77 16 29 C 0.14 3.02 6.59 -3.44 -0.02 3.00 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 2.44 6.41 -51.93 -0.33 2.10 16 33 H 0.09 1.68 7.73 -52.49 -0.41 1.27 16 34 H 0.06 1.05 7.78 -51.93 -0.40 0.64 16 35 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 36 H 0.41 5.96 6.82 -40.82 -0.28 5.68 16 37 H 0.08 0.86 7.79 -51.93 -0.40 0.45 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -32.31 389.66 -11.26 -43.57 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.70 Total: 4.80 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -4.21 Total: -3.33 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.28 Total: -57.90 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.31 -11.26 -43.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001075883.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.962 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds