Wall clock time and date at job start Sat Apr 11 2020 06:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 120.00037 * 2 1 4 4 H 1.48502 * 109.47590 * 269.99923 * 3 2 1 5 5 H 1.48498 * 109.47341 * 30.00107 * 3 2 1 6 6 H 1.48499 * 109.47262 * 150.00028 * 3 2 1 7 7 C 1.38810 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00054 * 196.37109 * 7 2 1 9 9 N 1.36934 * 119.99861 * 16.37922 * 7 2 1 10 10 C 1.46923 * 120.63465 * 27.65623 * 9 7 2 11 11 C 1.53194 * 108.77630 * 126.41621 * 10 9 7 12 12 C 1.53036 * 109.31431 * 54.63526 * 11 10 9 13 13 C 1.53042 * 109.53784 * 298.63835 * 12 11 10 14 14 H 1.09003 * 109.52178 * 301.39281 * 13 12 11 15 15 N 1.46495 * 109.49651 * 181.31704 * 13 12 11 16 16 C 1.34784 * 120.00268 * 155.16318 * 15 13 12 17 17 O 1.21591 * 119.99692 * 359.97438 * 16 15 13 18 18 C 1.47517 * 120.00425 * 180.02562 * 16 15 13 19 19 C 1.39795 * 120.06557 * 359.71181 * 18 16 15 20 20 C 1.37616 * 119.92747 * 179.77054 * 19 18 16 21 21 C 1.39214 * 120.06808 * 0.53510 * 20 19 18 22 22 N 1.39051 * 119.93136 * 179.71716 * 21 20 19 23 23 C 1.48226 * 110.99847 * 120.52013 * 22 21 20 24 24 C 1.51114 * 105.35948 * 144.90108 * 23 22 21 25 25 C 1.30963 * 109.45880 * 343.02719 * 24 23 22 26 26 C 1.48232 * 111.00280 * 234.16002 * 22 21 20 27 27 C 1.39220 * 120.14150 * 359.70198 * 21 20 19 28 28 C 1.37612 * 120.06476 * 0.04031 * 27 21 20 29 29 C 1.46932 * 120.62934 * 207.67959 * 9 7 2 30 30 H 0.97002 * 119.99568 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.59101 * 246.19970 * 10 9 7 32 32 H 1.08998 * 109.58832 * 6.62637 * 10 9 7 33 33 H 1.09001 * 109.50007 * 174.58936 * 11 10 9 34 34 H 1.09000 * 109.49802 * 294.68476 * 11 10 9 35 35 H 1.09003 * 109.46024 * 178.61876 * 12 11 10 36 36 H 1.08995 * 109.45038 * 58.64854 * 12 11 10 37 37 H 0.96998 * 120.00561 * 335.16067 * 15 13 12 38 38 H 1.07994 * 120.04117 * 0.03447 * 19 18 16 39 39 H 1.08005 * 119.96262 * 180.26112 * 20 19 18 40 40 H 1.08994 * 110.26976 * 263.87686 * 23 22 21 41 41 H 1.09000 * 110.26876 * 25.92749 * 23 22 21 42 42 H 1.08008 * 125.27007 * 163.04292 * 24 23 22 43 43 H 1.07998 * 125.26935 * 180.02562 * 25 24 23 44 44 H 1.08999 * 110.26126 * 334.07503 * 26 22 21 45 45 H 1.08997 * 110.26346 * 96.12635 * 26 22 21 46 46 H 1.07998 * 119.96908 * 180.02562 * 27 21 20 47 47 H 1.08003 * 120.03467 * 179.97438 * 28 27 21 48 48 H 1.09004 * 109.58682 * 353.37709 * 29 9 7 49 49 H 1.09000 * 109.58515 * 113.65275 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0574 -1.2211 0.2642 9 7 1.3672 -2.3641 -0.3334 10 6 0.2089 -2.3456 -1.2370 11 6 0.4643 -3.3260 -2.3861 12 6 0.7907 -4.7061 -1.8109 13 6 2.0594 -4.6187 -0.9595 14 1 2.8845 -4.2544 -1.5716 15 7 2.3887 -5.9463 -0.4350 16 6 3.6603 -6.2423 -0.1002 17 8 4.5342 -5.4076 -0.2340 18 6 3.9920 -7.5794 0.4274 19 6 2.9875 -8.5386 0.5864 20 6 3.3009 -9.7865 1.0744 21 6 4.6148 -10.0906 1.4201 22 7 4.9273 -11.3505 1.9184 23 6 5.9228 -12.0308 1.0563 24 6 6.7918 -12.8283 2.0010 25 6 6.6287 -12.3856 3.2227 26 6 5.6343 -11.2478 3.2172 27 6 5.6166 -9.1359 1.2676 28 6 5.3104 -7.8879 0.7751 29 6 1.8221 -3.6530 0.2057 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6852 -2.6473 -0.6914 32 1 0.0736 -1.3409 -1.6372 33 1 -0.4260 -3.3938 -3.0113 34 1 1.3040 -2.9737 -2.9851 35 1 0.9489 -5.4114 -2.6268 36 1 -0.0391 -5.0469 -1.1919 37 1 1.6917 -6.6124 -0.3286 38 1 1.9674 -8.3019 0.3226 39 1 2.5260 -10.5294 1.1935 40 1 5.4216 -12.6952 0.3525 41 1 6.5233 -11.2957 0.5205 42 1 7.4464 -13.6378 1.7131 43 1 7.1279 -12.7734 4.0983 44 1 6.1534 -10.2921 3.2898 45 1 4.9290 -11.3587 4.0408 46 1 6.6349 -9.3749 1.5362 47 1 6.0879 -7.1476 0.6574 48 1 2.7513 -3.5108 0.7576 49 1 1.0607 -4.0600 0.8711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008518026.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:56 Heat of formation + Delta-G solvation = 57.291774 kcal Electronic energy + Delta-G solvation = -28854.963022 eV Core-core repulsion = 24976.368129 eV Total energy + Delta-G solvation = -3878.594892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.02399 -39.82583 -38.07273 -37.11374 -34.38391 -33.32142 -32.40806 -31.27400 -30.45477 -29.64292 -28.88290 -28.08309 -25.27344 -24.38055 -23.12579 -22.23707 -22.00071 -21.41897 -20.07295 -19.86253 -19.44044 -18.12588 -17.30943 -16.79065 -16.24606 -15.74555 -15.15798 -15.01445 -14.81474 -14.63705 -14.22050 -14.13015 -13.88782 -13.82652 -13.47793 -13.38248 -13.21501 -13.07288 -12.75482 -12.47128 -12.39231 -12.34198 -12.14654 -11.80680 -11.76974 -11.56196 -11.07888 -10.87244 -10.79684 -10.24760 -10.20422 -10.12025 -9.98772 -9.88901 -9.62664 -9.54655 -9.30174 -9.00170 -8.84215 -8.77074 -8.38489 -6.65726 -5.76060 -3.18744 0.53223 1.10318 1.66830 2.79544 3.31488 3.39623 3.41741 3.48077 3.50919 3.70489 4.18621 4.35164 4.51210 4.53153 4.63053 4.77263 4.89363 5.00498 5.01804 5.03976 5.12471 5.21839 5.26976 5.31211 5.39694 5.44684 5.54805 5.62751 5.72327 5.74368 5.86462 5.89507 5.94377 6.08230 6.09347 6.11932 6.16848 6.25110 6.33165 6.37699 6.53871 6.62463 6.67219 6.70726 6.85283 6.93217 7.00701 7.38093 7.67548 7.72469 7.85064 8.39886 8.49058 9.24441 9.86442 10.41895 11.32459 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.023317 B = 0.002025 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.575869 B =13826.482417 C =14483.401014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.166 3.834 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.126 3.874 14 H 0.087 0.913 15 N -0.716 5.716 16 C 0.552 3.448 17 O -0.532 6.532 18 C -0.127 4.127 19 C -0.079 4.079 20 C -0.099 4.099 21 C 0.094 3.906 22 N -0.471 5.471 23 C 0.054 3.946 24 C -0.169 4.169 25 C -0.167 4.167 26 C 0.052 3.948 27 C -0.160 4.160 28 C -0.050 4.050 29 C 0.142 3.858 30 H 0.253 0.747 31 H 0.019 0.981 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.394 0.606 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.126 0.874 47 H 0.138 0.862 48 H 0.058 0.942 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.097 -26.787 1.811 28.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.198 4.198 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.021 3.979 14 H 0.105 0.895 15 N -0.367 5.367 16 C 0.338 3.662 17 O -0.410 6.410 18 C -0.130 4.130 19 C -0.099 4.099 20 C -0.118 4.118 21 C -0.001 4.001 22 N -0.192 5.192 23 C -0.072 4.072 24 C -0.187 4.187 25 C -0.185 4.185 26 C -0.074 4.074 27 C -0.180 4.180 28 C -0.069 4.069 29 C 0.014 3.986 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.228 0.772 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.086 0.914 45 H 0.110 0.890 46 H 0.144 0.856 47 H 0.156 0.844 48 H 0.076 0.924 49 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.077 -26.286 1.763 27.556 hybrid contribution 0.790 0.869 0.067 1.176 sum 8.867 -25.417 1.830 26.982 Atomic orbital electron populations 1.70033 1.05202 1.25440 1.54305 1.25034 0.95350 0.98390 1.00986 0.86247 0.79133 0.83474 0.77714 1.21416 1.21790 1.20384 1.19246 0.92517 0.84521 1.41522 0.91522 1.44006 1.34372 1.01180 1.51492 1.20867 0.88366 0.98565 0.88129 1.22185 1.00394 0.95197 1.00170 1.21683 0.96594 0.98675 0.98364 1.21778 0.97750 0.81167 0.97236 0.89480 1.46079 1.08667 1.16286 1.65650 1.18152 0.82994 0.86864 0.78152 1.90815 1.47314 1.49318 1.53519 1.20164 0.94690 0.94565 1.03579 1.21304 0.98873 0.92651 0.97050 1.20886 0.95319 0.96519 0.99027 1.19146 0.93876 0.89343 0.97701 1.63110 1.37578 1.15580 1.02975 1.22231 0.91851 0.97219 0.95868 1.23580 1.00024 1.00033 0.95057 1.23586 0.99068 0.97516 0.98359 1.22264 0.95064 0.97522 0.92548 1.21585 0.99581 0.94380 1.02415 1.21153 0.95792 0.95986 0.94006 1.21184 0.98002 0.86843 0.92549 0.93679 0.96316 0.89078 0.92689 0.92415 0.93060 0.92216 0.77184 0.85027 0.84640 0.89087 0.91604 0.84394 0.84378 0.91439 0.89016 0.85628 0.84430 0.92389 0.96447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 11.12 55.49 0.62 -25.84 16 2 C 0.00 0.01 4.94 -17.43 -0.09 -0.07 16 3 Si 0.90 22.28 29.58 -169.99 -5.03 17.25 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -7.05 9.59 -15.06 -0.14 -7.20 16 8 H 0.07 1.91 7.88 -52.49 -0.41 1.50 16 9 N -0.59 -15.08 3.00 -172.32 -0.52 -15.60 16 10 C 0.17 3.95 5.30 -3.71 -0.02 3.93 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.11 -1.85 5.35 -26.69 -0.14 -1.99 16 13 C 0.13 2.28 2.60 -67.82 -0.18 2.10 16 14 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 15 N -0.72 -10.48 5.03 -54.74 -0.28 -10.75 16 16 C 0.55 8.79 7.73 -12.47 -0.10 8.69 16 17 O -0.53 -10.73 16.00 5.29 0.08 -10.64 16 18 C -0.13 -1.59 5.88 -104.95 -0.62 -2.21 16 19 C -0.08 -0.78 9.53 -39.23 -0.37 -1.15 16 20 C -0.10 -0.91 9.95 -39.45 -0.39 -1.30 16 21 C 0.09 0.90 4.91 -83.86 -0.41 0.48 16 22 N -0.47 -4.06 5.56 -171.17 -0.95 -5.02 16 23 C 0.05 0.39 6.45 -4.04 -0.03 0.37 16 24 C -0.17 -1.02 10.94 -35.81 -0.39 -1.41 16 25 C -0.17 -1.02 10.95 -35.81 -0.39 -1.41 16 26 C 0.05 0.39 6.43 -4.04 -0.03 0.36 16 27 C -0.16 -1.56 7.64 -39.45 -0.30 -1.86 16 28 C -0.05 -0.59 9.58 -39.23 -0.38 -0.96 16 29 C 0.14 3.14 6.09 -3.71 -0.02 3.11 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 2.43 6.00 -51.93 -0.31 2.11 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.39 4.41 6.62 -40.82 -0.27 4.14 16 38 H 0.13 1.00 6.39 -52.49 -0.34 0.66 16 39 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.48 6.69 -51.93 -0.35 0.14 16 42 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 43 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 44 H 0.07 0.51 6.32 -51.93 -0.33 0.18 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.13 1.04 7.01 -52.49 -0.37 0.67 16 47 H 0.14 1.69 7.64 -52.48 -0.40 1.29 16 48 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -32.92 389.24 -11.73 -44.65 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.37 Total: 3.37 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -4.16 Total: -3.29 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -1.13 Total: -57.20 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.92 -11.73 -44.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008518026.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.946 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds