Wall clock time and date at job start Sat Apr 11 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00073 * 2 1 4 4 H 1.48502 * 109.47400 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47284 * 299.99994 * 3 2 1 6 6 H 1.48500 * 109.47400 * 59.99802 * 3 2 1 7 7 C 1.38817 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00109 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.47664 * 134.45757 * 179.97438 * 9 7 2 11 11 C 1.53505 * 85.97977 * 204.34530 * 10 9 7 12 12 C 1.47672 * 134.45900 * 0.04168 * 9 7 2 13 13 C 1.52677 * 113.57336 * 91.01698 * 11 10 9 14 14 C 1.53335 * 109.10978 * 73.80805 * 13 11 10 15 15 N 1.46887 * 108.76402 * 52.40533 * 14 13 11 16 16 C 1.34775 * 120.46409 * 124.47146 * 15 14 13 17 17 O 1.21286 * 120.00196 * 5.10245 * 16 15 14 18 18 C 1.50697 * 120.00231 * 185.09872 * 16 15 14 19 19 C 1.50704 * 115.54566 * 66.28326 * 18 16 15 20 20 C 1.38225 * 119.62135 * 20.80847 * 19 18 16 21 21 C 1.38627 * 119.16289 * 180.02562 * 20 19 18 22 22 C 1.38676 * 118.41794 * 359.97438 * 21 20 19 23 23 C 1.38179 * 119.16423 * 0.02562 * 22 21 20 24 24 N 1.31861 * 119.61710 * 200.83161 * 19 18 16 25 25 C 1.52995 * 117.52143 * 211.98326 * 18 16 15 26 26 C 1.52996 * 117.50062 * 280.61583 * 18 16 15 27 27 C 1.46880 * 119.06931 * 304.74671 * 15 14 13 28 28 C 1.52677 * 113.56415 * 222.23100 * 11 10 9 29 29 H 0.96997 * 119.99941 * 359.97438 * 1 2 3 30 30 H 1.09002 * 113.79176 * 90.07942 * 10 9 7 31 31 H 1.08996 * 113.79594 * 318.61539 * 10 9 7 32 32 H 1.09007 * 113.78461 * 41.38355 * 12 9 7 33 33 H 1.09000 * 113.78986 * 269.92296 * 12 9 7 34 34 H 1.08995 * 109.52969 * 313.92377 * 13 11 10 35 35 H 1.08996 * 109.59379 * 193.73228 * 13 11 10 36 36 H 1.09009 * 109.58917 * 292.62616 * 14 13 11 37 37 H 1.08996 * 109.71534 * 172.26246 * 14 13 11 38 38 H 1.08001 * 120.41734 * 0.02562 * 20 19 18 39 39 H 1.08002 * 120.79091 * 180.02562 * 21 20 19 40 40 H 1.08003 * 120.41224 * 180.02562 * 22 21 20 41 41 H 1.08006 * 119.61377 * 180.26945 * 23 22 21 42 42 H 1.09002 * 117.50249 * 214.97251 * 25 18 16 43 43 H 1.08995 * 117.50079 * 359.97438 * 25 18 16 44 44 H 1.08996 * 117.49883 * 359.97377 * 26 18 16 45 45 H 1.09001 * 117.49704 * 144.96903 * 26 18 16 46 46 H 1.09003 * 109.58828 * 175.03712 * 27 15 14 47 47 H 1.08993 * 109.59083 * 295.47485 * 27 15 14 48 48 H 1.09000 * 109.52839 * 46.08397 * 28 11 10 49 49 H 1.09002 * 109.53186 * 166.29988 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7212 -3.8107 0.0005 11 6 0.3483 -4.0808 -0.6307 12 6 -0.1044 -2.7568 -0.0007 13 6 0.3630 -4.0580 -2.1572 14 6 1.0402 -5.3339 -2.6718 15 7 0.3940 -6.4963 -2.0483 16 6 -0.1276 -7.4783 -2.8098 17 8 0.0156 -7.4529 -4.0139 18 6 -0.8886 -8.6081 -2.1653 19 6 -2.1888 -8.2238 -1.5073 20 6 -2.8192 -7.0496 -1.8740 21 6 -4.0145 -6.7051 -1.2623 22 6 -4.5337 -7.5587 -0.3005 23 6 -3.8470 -8.7157 0.0142 24 7 -2.7117 -9.0114 -0.5881 25 6 -0.8141 -9.9824 -2.8335 26 6 -0.0740 -9.7301 -1.5184 27 6 0.3188 -6.5703 -0.5833 28 6 -0.3580 -5.3057 -0.0547 29 1 -0.4850 0.8400 0.0004 30 1 1.8377 -4.2347 0.9979 31 1 2.5600 -4.0339 -0.6588 32 1 -0.7163 -2.1422 -0.6611 33 1 -0.5308 -2.8673 0.9963 34 1 0.9179 -3.1861 -2.5033 35 1 -0.6595 -4.0117 -2.5320 36 1 2.0977 -5.3183 -2.4077 37 1 0.9350 -5.3947 -3.7550 38 1 -2.3860 -6.4087 -2.6277 39 1 -4.5296 -5.7941 -1.5289 40 1 -5.4631 -7.3220 0.1962 41 1 -4.2470 -9.3879 0.7590 42 1 -1.7055 -10.6087 -2.7972 43 1 -0.2149 -10.0696 -3.7398 44 1 1.0124 -9.6512 -1.5594 45 1 -0.4783 -10.1900 -0.6167 46 1 -0.2639 -7.4440 -0.2910 47 1 1.3242 -6.6436 -0.1690 48 1 -0.2950 -5.2846 1.0333 49 1 -1.4042 -5.3004 -0.3603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035705174.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:40 Heat of formation + Delta-G solvation = 90.539558 kcal Electronic energy + Delta-G solvation = -30992.258471 eV Core-core repulsion = 27115.105311 eV Total energy + Delta-G solvation = -3877.153160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19242 -39.88647 -38.86998 -36.63596 -35.73945 -32.58275 -32.48102 -31.38342 -30.93583 -30.42716 -27.00410 -25.56161 -24.97280 -23.83128 -23.48001 -23.33780 -22.50841 -21.96820 -20.91646 -19.27951 -18.11719 -17.03030 -16.70665 -16.55811 -16.30257 -15.97025 -15.42780 -15.06011 -14.88370 -14.69115 -14.51368 -14.14087 -13.95362 -13.77914 -13.61683 -13.36679 -12.99417 -12.87752 -12.46769 -12.33313 -12.10445 -12.04054 -11.73984 -11.64318 -11.15696 -11.07987 -10.98711 -10.91379 -10.86239 -10.82232 -10.34207 -10.17175 -10.01066 -9.84071 -9.71282 -9.65607 -9.49428 -9.34399 -9.01205 -8.79060 -8.44390 -6.85620 -5.76343 -3.07791 0.87359 1.10081 2.45851 2.95332 3.33671 3.38164 3.43915 3.46110 3.84966 3.95055 4.25357 4.42180 4.45913 4.67475 4.72722 4.84418 4.92963 4.96991 5.04754 5.06843 5.16707 5.25651 5.31371 5.35673 5.45456 5.47764 5.50465 5.57070 5.63607 5.69864 5.70918 5.87686 5.91642 5.95236 5.97019 5.98093 6.05084 6.18629 6.26492 6.31268 6.43780 6.48435 6.60504 6.64109 6.80217 6.86056 7.23577 7.37520 7.44751 7.58562 7.75222 7.99296 8.15492 9.05758 9.71905 10.62164 11.40685 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.003199 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.138824 B = 8751.318456 C = 9623.402646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.126 3.874 11 C -0.107 4.107 12 C 0.174 3.826 13 C -0.095 4.095 14 C 0.112 3.888 15 N -0.595 5.595 16 C 0.555 3.445 17 O -0.539 6.539 18 C -0.120 4.120 19 C 0.174 3.826 20 C -0.154 4.154 21 C -0.066 4.066 22 C -0.176 4.176 23 C 0.103 3.897 24 N -0.481 5.481 25 C -0.126 4.126 26 C -0.139 4.139 27 C 0.110 3.890 28 C -0.117 4.117 29 H 0.252 0.748 30 H 0.030 0.970 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.157 0.843 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.117 0.883 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.963 -20.189 -1.250 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.334 5.334 10 C 0.000 4.000 11 C -0.108 4.108 12 C 0.049 3.951 13 C -0.133 4.133 14 C -0.009 4.009 15 N -0.327 5.327 16 C 0.341 3.659 17 O -0.417 6.417 18 C -0.124 4.124 19 C 0.036 3.964 20 C -0.174 4.174 21 C -0.092 4.092 22 C -0.195 4.195 23 C -0.055 4.055 24 N -0.190 5.190 25 C -0.164 4.164 26 C -0.176 4.176 27 C -0.013 4.013 28 C -0.156 4.156 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.174 0.826 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.135 0.865 46 H 0.099 0.901 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.388 -20.551 -1.664 21.586 hybrid contribution -0.137 2.003 0.201 2.018 sum -6.525 -18.548 -1.463 19.717 Atomic orbital electron populations 1.69824 1.04969 1.25081 1.56955 1.24746 0.95622 0.97391 1.02655 0.86095 0.78777 0.83954 0.77238 1.20517 1.21748 1.21839 1.19060 0.90240 0.82098 1.43410 0.90376 1.45955 1.02321 0.99162 1.85998 1.22586 0.94401 0.86607 0.96376 1.22370 0.97955 0.95469 0.95049 1.22211 0.88087 0.88355 0.96465 1.21478 1.00790 0.96817 0.94220 1.21750 0.96498 0.84080 0.98612 1.48030 1.56738 1.20820 1.07088 1.19187 0.78507 0.81879 0.86338 1.90688 1.60008 1.76823 1.14151 1.19945 0.95175 0.90946 1.06332 1.19690 0.93336 0.90875 0.92481 1.21889 0.96390 0.97726 1.01389 1.21615 0.94558 0.98981 0.94044 1.22149 1.01834 0.96217 0.99345 1.22666 0.90310 0.95237 0.97247 1.67245 1.11964 1.32253 1.07585 1.23025 1.03069 0.93193 0.97115 1.23117 0.98365 0.97955 0.98193 1.21703 1.01403 0.99164 0.78988 1.21736 0.99557 0.93932 1.00366 0.93802 0.95199 0.94146 0.91046 0.95885 0.89362 0.92265 0.91270 0.89346 0.85073 0.84503 0.84694 0.82617 0.87775 0.87455 0.88152 0.86493 0.90098 0.91166 0.90890 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 11.39 55.49 0.63 -26.33 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.22 -6.09 10.70 -15.06 -0.16 -6.25 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.61 -15.10 3.53 -179.80 -0.64 -15.73 16 10 C 0.13 2.47 7.72 -3.15 -0.02 2.44 16 11 C -0.11 -1.87 0.77 -154.43 -0.12 -1.99 16 12 C 0.17 3.95 6.64 -3.17 -0.02 3.93 16 13 C -0.09 -1.58 5.21 -26.72 -0.14 -1.72 16 14 C 0.11 1.64 6.29 -3.66 -0.02 1.62 16 15 N -0.59 -8.09 2.95 -172.95 -0.51 -8.60 16 16 C 0.55 7.86 5.50 -10.99 -0.06 7.80 16 17 O -0.54 -9.26 16.13 5.55 0.09 -9.17 16 18 C -0.12 -1.42 1.27 -156.82 -0.20 -1.62 16 19 C 0.17 2.05 4.93 -82.58 -0.41 1.64 16 20 C -0.15 -1.83 8.53 -39.44 -0.34 -2.17 16 21 C -0.07 -0.66 10.18 -39.28 -0.40 -1.06 16 22 C -0.18 -1.51 10.11 -39.44 -0.40 -1.91 16 23 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 24 N -0.48 -5.28 9.37 -9.47 -0.09 -5.37 16 25 C -0.13 -1.30 9.75 -26.73 -0.26 -1.56 16 26 C -0.14 -1.34 9.10 -26.73 -0.24 -1.58 16 27 C 0.11 1.37 5.94 -3.91 -0.02 1.35 16 28 C -0.12 -1.66 5.24 -26.97 -0.14 -1.80 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 31 H 0.04 0.76 7.41 -51.93 -0.38 0.38 16 32 H 0.07 1.81 7.12 -51.92 -0.37 1.44 16 33 H 0.02 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.09 1.70 8.01 -51.93 -0.42 1.28 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.99 7.49 -51.92 -0.39 0.60 16 37 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 38 H 0.13 1.71 7.09 -52.49 -0.37 1.34 16 39 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.16 0.96 8.06 -52.48 -0.42 0.53 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.11 1.13 8.01 -51.93 -0.42 0.71 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.12 1.07 7.61 -51.93 -0.40 0.68 16 46 H 0.08 0.95 4.92 -51.93 -0.26 0.69 16 47 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 48 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 49 H 0.06 0.88 7.30 -51.93 -0.38 0.51 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -32.26 387.88 -10.45 -42.70 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.50 Total: 2.09 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.25 Total: -2.46 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.60 Total: -56.03 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.26 -10.45 -42.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035705174.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.241 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds