Wall clock time and date at job start Sat Apr 11 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00073 * 2 1 4 4 H 1.48502 * 109.47400 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47284 * 299.99994 * 3 2 1 6 6 H 1.48500 * 109.47400 * 59.99802 * 3 2 1 7 7 C 1.38817 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00109 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.47664 * 134.45757 * 179.97438 * 9 7 2 11 11 C 1.53505 * 85.97977 * 204.34530 * 10 9 7 12 12 C 1.47672 * 134.45900 * 0.04168 * 9 7 2 13 13 C 1.52677 * 113.57336 * 91.01698 * 11 10 9 14 14 C 1.53335 * 109.10978 * 73.80805 * 13 11 10 15 15 N 1.46887 * 108.76402 * 52.40533 * 14 13 11 16 16 C 1.34775 * 120.46409 * 124.47146 * 15 14 13 17 17 O 1.21286 * 120.00196 * 5.10245 * 16 15 14 18 18 C 1.50697 * 120.00231 * 185.09872 * 16 15 14 19 19 C 1.50704 * 115.54566 * 66.28326 * 18 16 15 20 20 C 1.38225 * 119.62135 * 20.80847 * 19 18 16 21 21 C 1.38627 * 119.16289 * 180.02562 * 20 19 18 22 22 C 1.38676 * 118.41794 * 359.97438 * 21 20 19 23 23 C 1.38179 * 119.16423 * 0.02562 * 22 21 20 24 24 N 1.31861 * 119.61710 * 200.83161 * 19 18 16 25 25 C 1.52995 * 117.52143 * 211.98326 * 18 16 15 26 26 C 1.52996 * 117.50062 * 280.61583 * 18 16 15 27 27 C 1.46880 * 119.06931 * 304.74671 * 15 14 13 28 28 C 1.52677 * 113.56415 * 222.23100 * 11 10 9 29 29 H 0.96997 * 119.99941 * 359.97438 * 1 2 3 30 30 H 1.09002 * 113.79176 * 90.07942 * 10 9 7 31 31 H 1.08996 * 113.79594 * 318.61539 * 10 9 7 32 32 H 1.09007 * 113.78461 * 41.38355 * 12 9 7 33 33 H 1.09000 * 113.78986 * 269.92296 * 12 9 7 34 34 H 1.08995 * 109.52969 * 313.92377 * 13 11 10 35 35 H 1.08996 * 109.59379 * 193.73228 * 13 11 10 36 36 H 1.09009 * 109.58917 * 292.62616 * 14 13 11 37 37 H 1.08996 * 109.71534 * 172.26246 * 14 13 11 38 38 H 1.08001 * 120.41734 * 0.02562 * 20 19 18 39 39 H 1.08002 * 120.79091 * 180.02562 * 21 20 19 40 40 H 1.08003 * 120.41224 * 180.02562 * 22 21 20 41 41 H 1.08006 * 119.61377 * 180.26945 * 23 22 21 42 42 H 1.09002 * 117.50249 * 214.97251 * 25 18 16 43 43 H 1.08995 * 117.50079 * 359.97438 * 25 18 16 44 44 H 1.08996 * 117.49883 * 359.97377 * 26 18 16 45 45 H 1.09001 * 117.49704 * 144.96903 * 26 18 16 46 46 H 1.09003 * 109.58828 * 175.03712 * 27 15 14 47 47 H 1.08993 * 109.59083 * 295.47485 * 27 15 14 48 48 H 1.09000 * 109.52839 * 46.08397 * 28 11 10 49 49 H 1.09002 * 109.53186 * 166.29988 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7212 -3.8107 0.0005 11 6 0.3483 -4.0808 -0.6307 12 6 -0.1044 -2.7568 -0.0007 13 6 0.3630 -4.0580 -2.1572 14 6 1.0402 -5.3339 -2.6718 15 7 0.3940 -6.4963 -2.0483 16 6 -0.1276 -7.4783 -2.8098 17 8 0.0156 -7.4529 -4.0139 18 6 -0.8886 -8.6081 -2.1653 19 6 -2.1888 -8.2238 -1.5073 20 6 -2.8192 -7.0496 -1.8740 21 6 -4.0145 -6.7051 -1.2623 22 6 -4.5337 -7.5587 -0.3005 23 6 -3.8470 -8.7157 0.0142 24 7 -2.7117 -9.0114 -0.5881 25 6 -0.8141 -9.9824 -2.8335 26 6 -0.0740 -9.7301 -1.5184 27 6 0.3188 -6.5703 -0.5833 28 6 -0.3580 -5.3057 -0.0547 29 1 -0.4850 0.8400 0.0004 30 1 1.8377 -4.2347 0.9979 31 1 2.5600 -4.0339 -0.6588 32 1 -0.7163 -2.1422 -0.6611 33 1 -0.5308 -2.8673 0.9963 34 1 0.9179 -3.1861 -2.5033 35 1 -0.6595 -4.0117 -2.5320 36 1 2.0977 -5.3183 -2.4077 37 1 0.9350 -5.3947 -3.7550 38 1 -2.3860 -6.4087 -2.6277 39 1 -4.5296 -5.7941 -1.5289 40 1 -5.4631 -7.3220 0.1962 41 1 -4.2470 -9.3879 0.7590 42 1 -1.7055 -10.6087 -2.7972 43 1 -0.2149 -10.0696 -3.7398 44 1 1.0124 -9.6512 -1.5594 45 1 -0.4783 -10.1900 -0.6167 46 1 -0.2639 -7.4440 -0.2910 47 1 1.3242 -6.6436 -0.1690 48 1 -0.2950 -5.2846 1.0333 49 1 -1.4042 -5.3004 -0.3603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035705174.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:40 Heat of formation + Delta-G solvation = 72.476686 kcal Electronic energy + Delta-G solvation = -30993.041736 eV Core-core repulsion = 27115.105311 eV Total energy + Delta-G solvation = -3877.936425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.18151 -41.01195 -40.14530 -37.59593 -37.07297 -34.40921 -33.33664 -32.38433 -32.07428 -31.87051 -28.76242 -26.87558 -26.42245 -25.04499 -24.46570 -24.39492 -23.32309 -23.27217 -22.32187 -20.40191 -19.21026 -18.69909 -18.20783 -17.48745 -17.25263 -16.92374 -16.85537 -16.26252 -16.14813 -16.02235 -15.64483 -15.49690 -15.19288 -14.94871 -14.87127 -14.32722 -14.15348 -14.06394 -13.76341 -13.67729 -13.60892 -13.15959 -12.93252 -12.85900 -12.80781 -12.65930 -12.42440 -12.20871 -12.14294 -11.86430 -11.71413 -11.66548 -11.56748 -11.25641 -11.06349 -10.83632 -10.79601 -10.72966 -10.41282 -9.78133 -9.64741 -8.87158 -7.88759 -5.20512 0.12171 0.34247 1.38468 1.44599 1.44923 1.54971 1.87742 2.47788 2.55433 3.05323 3.12757 3.31812 3.35947 3.41487 3.55707 3.62311 3.88672 3.92664 3.97703 4.00027 4.09240 4.13673 4.24041 4.27621 4.29343 4.37369 4.49195 4.59037 4.65137 4.71961 4.73354 4.73561 4.77815 4.83880 4.89870 4.92956 4.96321 5.00790 5.12695 5.16495 5.21985 5.23516 5.28695 5.30700 5.32125 5.49175 5.59301 5.73202 5.77043 5.96959 6.34015 6.94814 6.99460 7.04445 7.63660 8.60639 9.28116 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.003199 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.138824 B = 8751.318456 C = 9623.402646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.066 4.066 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.229 4.229 8 H 0.081 0.919 9 N -0.637 5.637 10 C 0.129 3.871 11 C -0.079 4.079 12 C 0.171 3.829 13 C -0.087 4.087 14 C 0.123 3.877 15 N -0.593 5.593 16 C 0.556 3.444 17 O -0.575 6.575 18 C -0.134 4.134 19 C 0.165 3.835 20 C -0.175 4.175 21 C -0.075 4.075 22 C -0.169 4.169 23 C 0.101 3.899 24 N -0.489 5.489 25 C -0.125 4.125 26 C -0.119 4.119 27 C 0.117 3.883 28 C -0.108 4.108 29 H 0.246 0.754 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.013 0.987 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.146 0.854 40 H 0.164 0.836 41 H 0.189 0.811 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.127 0.873 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.859 -22.541 0.167 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.259 4.259 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.357 4.357 8 H 0.099 0.901 9 N -0.363 5.363 10 C 0.005 3.995 11 C -0.080 4.080 12 C 0.045 3.955 13 C -0.125 4.125 14 C 0.000 4.000 15 N -0.324 5.324 16 C 0.345 3.655 17 O -0.455 6.455 18 C -0.138 4.138 19 C 0.028 3.972 20 C -0.195 4.195 21 C -0.101 4.101 22 C -0.189 4.189 23 C -0.056 4.056 24 N -0.199 5.199 25 C -0.163 4.163 26 C -0.156 4.156 27 C -0.005 4.005 28 C -0.147 4.147 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.164 0.836 40 H 0.182 0.818 41 H 0.205 0.795 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.127 0.873 45 H 0.146 0.854 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.260 -22.943 -0.233 23.783 hybrid contribution -0.238 2.707 -0.231 2.727 sum -6.498 -20.236 -0.464 21.259 Atomic orbital electron populations 1.70012 1.06346 1.25242 1.58619 1.25533 0.96460 1.00574 1.03363 0.85089 0.78282 0.79870 0.76591 1.19025 1.22111 1.22114 1.19434 0.90729 0.83547 1.42009 0.90106 1.46309 1.03477 1.00513 1.86040 1.22764 0.95646 0.83611 0.97507 1.22055 0.96503 0.94421 0.94993 1.22132 0.86960 0.90769 0.95612 1.21338 1.00376 0.96987 0.93839 1.21539 0.96729 0.83399 0.98284 1.48035 1.56427 1.20285 1.07641 1.19587 0.77852 0.82229 0.85881 1.90666 1.61283 1.77754 1.15787 1.19864 0.95727 0.90499 1.07728 1.19617 0.93428 0.91025 0.93086 1.21817 0.97623 0.98153 1.01945 1.21842 0.94109 0.99777 0.94349 1.22480 1.02560 0.95467 0.98375 1.23270 0.89530 0.95699 0.97096 1.67278 1.12889 1.32102 1.07593 1.23063 1.03513 0.92239 0.97436 1.23202 0.98635 0.95692 0.98047 1.21744 1.02291 0.98492 0.77957 1.21650 0.99295 0.92956 1.00762 0.94497 0.93451 0.93027 0.94702 0.96877 0.92287 0.92680 0.90273 0.89992 0.87286 0.83622 0.81825 0.79463 0.86992 0.88022 0.87287 0.85440 0.88573 0.89592 0.89929 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.66 11.39 21.65 0.25 -57.42 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.23 -12.78 10.70 84.04 0.90 -11.88 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 9 N -0.64 -32.00 3.53 -722.75 -2.55 -34.56 16 10 C 0.13 4.90 7.72 86.32 0.67 5.57 16 11 C -0.08 -2.72 0.77 -52.04 -0.04 -2.76 16 12 C 0.17 7.96 6.64 86.30 0.57 8.53 16 13 C -0.09 -2.97 5.21 30.60 0.16 -2.81 16 14 C 0.12 3.55 6.29 86.42 0.54 4.09 16 15 N -0.59 -15.43 2.95 -819.49 -2.42 -17.85 16 16 C 0.56 15.38 5.50 87.66 0.48 15.86 16 17 O -0.58 -19.86 16.13 -3.05 -0.05 -19.91 16 18 C -0.13 -2.97 1.27 -53.68 -0.07 -3.04 16 19 C 0.17 3.64 4.93 42.55 0.21 3.85 16 20 C -0.18 -4.07 8.53 22.36 0.19 -3.88 16 21 C -0.07 -1.40 10.18 22.47 0.23 -1.18 16 22 C -0.17 -2.42 10.11 22.36 0.23 -2.19 16 23 C 0.10 1.49 11.18 84.67 0.95 2.43 16 24 N -0.49 -9.40 9.37 -183.88 -1.72 -11.12 16 25 C -0.12 -2.37 9.75 30.59 0.30 -2.07 16 26 C -0.12 -1.97 9.10 30.59 0.28 -1.69 16 27 C 0.12 2.64 5.94 86.26 0.51 3.15 16 28 C -0.11 -2.89 5.24 30.44 0.16 -2.73 16 29 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.05 1.68 8.07 -2.39 -0.02 1.66 16 31 H 0.05 1.85 7.41 -2.39 -0.02 1.83 16 32 H 0.03 1.86 7.12 -2.38 -0.02 1.85 16 33 H 0.01 0.64 8.09 -2.39 -0.02 0.62 16 34 H 0.06 2.36 8.01 -2.39 -0.02 2.34 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.08 2.15 7.49 -2.38 -0.02 2.14 16 37 H 0.08 2.52 7.00 -2.39 -0.02 2.50 16 38 H 0.11 2.96 7.09 -2.91 -0.02 2.94 16 39 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.10 2.05 8.01 -2.39 -0.02 2.03 16 44 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.13 1.89 7.61 -2.39 -0.02 1.88 16 46 H 0.10 1.97 4.92 -2.39 -0.01 1.96 16 47 H 0.09 1.74 8.07 -2.39 -0.02 1.72 16 48 H 0.08 2.12 8.12 -2.39 -0.02 2.10 16 49 H 0.06 1.70 7.30 -2.39 -0.02 1.68 16 Total: -1.00 -71.84 387.88 3.21 -68.63 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.95 Total: 18.21 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 6.73 Total: 5.93 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -6.45 Total: -120.95 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.91 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -71.84 3.21 -68.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035705174.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.103 kcal (2) G-P(sol) polarization free energy of solvation -71.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds