Wall clock time and date at job start Sat Apr 11 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86800 * 120.00026 * 2 1 4 4 H 1.48500 * 109.47025 * 274.99039 * 3 2 1 5 5 H 1.48494 * 109.47326 * 34.99356 * 3 2 1 6 6 H 1.48503 * 109.47217 * 154.99468 * 3 2 1 7 7 C 1.38817 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99579 * 185.84892 * 7 2 1 9 9 N 1.36934 * 120.00031 * 5.84706 * 7 2 1 10 10 C 1.47433 * 126.05543 * 354.45835 * 9 7 2 11 11 C 1.54500 * 107.15006 * 181.62912 * 10 9 7 12 12 C 1.56023 * 102.61879 * 22.83229 * 11 10 9 13 13 H 1.09000 * 113.55790 * 202.58459 * 12 11 10 14 14 C 1.53213 * 106.35298 * 78.27938 * 12 11 10 15 15 N 1.46532 * 110.08329 * 203.02372 * 14 12 11 16 16 C 1.34772 * 121.01030 * 235.49711 * 15 14 12 17 17 O 1.21280 * 120.00091 * 355.31386 * 16 15 14 18 18 C 1.50707 * 120.00094 * 175.30940 * 16 15 14 19 19 C 1.50703 * 115.54801 * 293.16041 * 18 16 15 20 20 C 1.38223 * 119.61828 * 313.75542 * 19 18 16 21 21 C 1.38632 * 119.16025 * 179.97438 * 20 19 18 22 22 C 1.38674 * 118.42076 * 0.02562 * 21 20 19 23 23 C 1.38189 * 119.16163 * 359.97438 * 22 21 20 24 24 N 1.31858 * 119.61490 * 133.47930 * 19 18 16 25 25 C 1.52992 * 117.49902 * 147.48487 * 18 16 15 26 26 C 1.53002 * 117.49506 * 78.82464 * 18 16 15 27 27 C 1.46859 * 118.16217 * 55.67198 * 15 14 12 28 28 C 1.53042 * 107.59845 * 302.46013 * 27 15 14 29 29 C 1.46464 * 126.05798 * 174.49348 * 9 7 2 30 30 H 1.09004 * 108.34917 * 269.80420 * 29 9 7 31 31 H 0.97002 * 120.00621 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.90084 * 301.00929 * 10 9 7 33 33 H 1.08999 * 109.90348 * 62.06617 * 10 9 7 34 34 H 1.08999 * 110.78042 * 264.54670 * 11 10 9 35 35 H 1.09006 * 110.77784 * 141.11446 * 11 10 9 36 36 H 1.09001 * 109.35212 * 323.17185 * 14 12 11 37 37 H 1.08994 * 109.35146 * 82.87743 * 14 12 11 38 38 H 1.07997 * 120.42045 * 359.96372 * 20 19 18 39 39 H 1.07994 * 120.79024 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.42157 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.61330 * 180.02562 * 23 22 21 42 42 H 1.09001 * 117.49927 * 0.02562 * 25 18 16 43 43 H 1.09004 * 117.49791 * 145.02111 * 25 18 16 44 44 H 1.08998 * 117.50068 * 214.97858 * 26 18 16 45 45 H 1.08994 * 117.49919 * 0.02562 * 26 18 16 46 46 H 1.08997 * 109.87165 * 182.93320 * 27 15 14 47 47 H 1.08996 * 109.84598 * 61.97172 * 27 15 14 48 48 H 1.08999 * 109.15382 * 293.97827 * 28 27 15 49 49 H 1.09008 * 109.15007 * 174.81416 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5918 7 6 2.0102 -1.2022 0.0005 8 1 3.0860 -1.2045 0.0959 9 7 1.3309 -2.3850 -0.1197 10 6 -0.1345 -2.5458 -0.1422 11 6 -0.4252 -4.0592 -0.2513 12 6 0.8844 -4.6989 0.3056 13 1 1.0477 -5.7220 -0.0330 14 6 0.8016 -4.5918 1.8318 15 7 2.1455 -4.6439 2.4135 16 6 2.4612 -5.5591 3.3511 17 8 1.6059 -6.3001 3.7875 18 6 3.8769 -5.6618 3.8574 19 6 4.8938 -6.1376 2.8520 20 6 4.6117 -7.2370 2.0631 21 6 5.5537 -7.6662 1.1410 22 6 6.7498 -6.9709 1.0469 23 6 6.9613 -5.8806 1.8692 24 7 6.0400 -5.4971 2.7315 25 6 4.0772 -6.0779 5.3160 26 6 4.3342 -4.6301 4.8906 27 6 3.1400 -3.6680 1.9494 28 6 3.2753 -3.8303 0.4337 29 6 1.9313 -3.7148 -0.2482 30 1 2.0738 -3.9260 -1.3080 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5652 -2.1506 0.7779 33 1 -0.5521 -2.0220 -1.0020 34 1 -0.5854 -4.3483 -1.2900 35 1 -1.2819 -4.3338 0.3642 36 1 0.3273 -3.6484 2.1024 37 1 0.2077 -5.4190 2.2202 38 1 3.6694 -7.7550 2.1638 39 1 5.3609 -8.5223 0.5115 40 1 7.5065 -7.2775 0.3400 41 1 7.8901 -5.3335 1.8018 42 1 3.1849 -6.2779 5.9093 43 1 4.9446 -6.6957 5.5485 44 1 5.3706 -4.2959 4.8436 45 1 3.6110 -3.8775 5.2044 46 1 4.0997 -3.8606 2.4288 47 1 2.8048 -2.6579 2.1844 48 1 3.7040 -4.8085 0.2156 49 1 3.9392 -3.0561 0.0490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036716191.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:05 Heat of formation + Delta-G solvation = 65.821426 kcal Electronic energy + Delta-G solvation = -31647.953100 eV Core-core repulsion = 27769.728081 eV Total energy + Delta-G solvation = -3878.225019 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.99119 -39.74659 -38.46970 -36.37139 -34.97421 -32.76642 -32.53355 -31.61040 -31.18099 -29.33521 -27.72118 -25.90233 -24.75990 -23.85629 -23.70608 -22.56536 -22.26436 -21.88311 -20.04526 -19.28877 -18.33863 -17.40452 -16.47760 -16.36095 -16.17523 -15.91450 -15.49548 -15.17633 -14.83142 -14.66948 -14.13408 -14.04691 -13.82325 -13.75872 -13.37498 -13.08611 -12.85886 -12.70716 -12.39772 -12.14063 -11.93334 -11.59306 -11.52213 -11.41332 -11.14856 -11.05139 -10.80127 -10.76605 -10.71182 -10.62631 -10.16030 -10.03858 -9.98308 -9.92882 -9.65357 -9.63115 -9.58755 -9.46316 -8.97914 -8.59896 -8.17593 -6.82221 -5.73728 -3.05568 0.93206 1.14178 2.66995 3.19441 3.38390 3.43869 3.45917 3.47188 3.90557 4.03928 4.45652 4.47893 4.60490 4.71020 4.84243 4.89851 4.96051 5.11845 5.17881 5.25994 5.32536 5.40510 5.51583 5.54434 5.56088 5.58758 5.68391 5.72240 5.79821 5.84281 5.90382 5.97206 6.05347 6.05591 6.10028 6.12374 6.29599 6.33384 6.35267 6.44647 6.53332 6.56824 6.70123 6.77472 6.89844 6.95960 7.54351 7.61573 7.76078 7.80586 7.84596 8.23610 8.38583 9.19473 9.81854 10.49763 11.38737 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.004141 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.303126 B = 6759.488120 C = 7230.817811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.176 3.824 11 C -0.141 4.141 12 C -0.115 4.115 13 H 0.075 0.925 14 C 0.126 3.874 15 N -0.588 5.588 16 C 0.554 3.446 17 O -0.548 6.548 18 C -0.119 4.119 19 C 0.178 3.822 20 C -0.157 4.157 21 C -0.071 4.071 22 C -0.177 4.177 23 C 0.104 3.896 24 N -0.475 5.475 25 C -0.132 4.132 26 C -0.138 4.138 27 C 0.111 3.889 28 C -0.124 4.124 29 C 0.172 3.828 30 H 0.016 0.984 31 H 0.252 0.748 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.887 -14.421 4.463 18.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.051 3.949 11 C -0.180 4.180 12 C -0.135 4.135 13 H 0.094 0.906 14 C 0.004 3.996 15 N -0.318 5.318 16 C 0.340 3.660 17 O -0.427 6.427 18 C -0.123 4.123 19 C 0.040 3.960 20 C -0.176 4.176 21 C -0.097 4.097 22 C -0.196 4.196 23 C -0.053 4.053 24 N -0.184 5.184 25 C -0.170 4.170 26 C -0.176 4.176 27 C -0.011 4.011 28 C -0.163 4.163 29 C 0.064 3.936 30 H 0.033 0.967 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.174 0.826 42 H 0.127 0.873 43 H 0.119 0.881 44 H 0.135 0.865 45 H 0.120 0.880 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.066 0.934 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.528 -13.815 5.213 18.134 hybrid contribution 0.325 0.235 -0.934 1.017 sum 10.854 -13.580 4.279 17.903 Atomic orbital electron populations 1.69956 1.04876 1.24977 1.56736 1.24771 0.95604 0.97492 1.02291 0.86197 0.78729 0.83977 0.77474 1.21737 1.21850 1.20638 1.18954 0.90809 0.82267 1.43243 0.90402 1.44301 1.01409 1.00087 1.86007 1.21255 0.84415 0.88281 1.00919 1.23125 0.95804 0.99387 0.99693 1.22730 0.97870 0.98217 0.94718 0.90634 1.21599 0.82563 1.03004 0.92469 1.47923 1.13568 1.31782 1.38565 1.19132 0.87597 0.80019 0.79221 1.90656 1.49715 1.43963 1.58330 1.19909 0.92122 1.09433 0.90803 1.19721 0.91176 0.91227 0.93831 1.21888 1.00886 0.97910 0.96958 1.21557 0.92970 0.98820 0.96329 1.22136 0.98482 0.97742 1.01290 1.22715 0.97537 0.94015 0.91055 1.67328 1.01463 1.29562 1.20057 1.23049 1.03700 0.98157 0.92059 1.23104 1.03838 0.92282 0.98353 1.21812 0.91363 0.93136 0.94809 1.21546 0.99047 1.00501 0.95224 1.20219 0.90707 0.86863 0.95812 0.96692 0.93809 0.93863 0.93632 0.92331 0.91980 0.90218 0.90271 0.84956 0.84791 0.84800 0.82584 0.87332 0.88143 0.86508 0.87984 0.89975 0.89413 0.93394 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.16 10.41 55.49 0.58 -25.58 16 2 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 21.56 29.56 -169.99 -5.02 16.53 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.22 -5.84 9.03 -15.06 -0.14 -5.98 16 8 H 0.08 1.96 6.66 -52.48 -0.35 1.61 16 9 N -0.59 -14.07 3.12 -164.49 -0.51 -14.58 16 10 C 0.18 4.10 4.64 -2.74 -0.01 4.08 16 11 C -0.14 -2.59 6.29 -24.33 -0.15 -2.74 16 12 C -0.11 -2.03 3.86 -88.38 -0.34 -2.37 16 13 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 14 C 0.13 2.27 5.45 -3.91 -0.02 2.25 16 15 N -0.59 -10.16 2.92 -173.22 -0.51 -10.67 16 16 C 0.55 9.28 6.35 -10.98 -0.07 9.21 16 17 O -0.55 -10.48 16.18 5.56 0.09 -10.39 16 18 C -0.12 -1.64 1.13 -156.81 -0.18 -1.82 16 19 C 0.18 2.34 5.02 -82.58 -0.41 1.93 16 20 C -0.16 -1.92 9.40 -39.44 -0.37 -2.29 16 21 C -0.07 -0.70 10.18 -39.28 -0.40 -1.10 16 22 C -0.18 -1.59 10.11 -39.44 -0.40 -1.99 16 23 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 24 N -0.48 -5.97 9.00 -9.47 -0.09 -6.06 16 25 C -0.13 -1.55 9.76 -26.70 -0.26 -1.81 16 26 C -0.14 -1.69 9.04 -26.69 -0.24 -1.93 16 27 C 0.11 1.93 5.99 -3.82 -0.02 1.91 16 28 C -0.12 -2.21 5.16 -27.64 -0.14 -2.35 16 29 C 0.17 3.41 2.85 -68.37 -0.19 3.22 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.04 1.11 7.14 -51.93 -0.37 0.74 16 33 H 0.05 1.19 7.43 -51.93 -0.39 0.80 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.03 7.97 -51.93 -0.41 0.62 16 36 H 0.08 1.62 6.80 -51.93 -0.35 1.27 16 37 H 0.08 1.41 7.02 -51.93 -0.36 1.05 16 38 H 0.13 1.67 7.85 -52.49 -0.41 1.26 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.11 1.30 8.02 -51.93 -0.42 0.89 16 43 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.12 1.35 7.60 -51.93 -0.39 0.96 16 45 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.08 1.32 4.75 -51.93 -0.25 1.07 16 47 H 0.09 1.77 7.47 -51.93 -0.39 1.38 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.07 1.36 7.02 -51.92 -0.36 1.00 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -30.53 380.50 -10.78 -41.31 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.40 Total: 4.87 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -3.65 Total: -1.16 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.53 Total: -56.89 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.53 -10.78 -41.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036716191.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.130 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds