Wall clock time and date at job start Sat Apr 11 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00185 * 2 1 4 4 H 1.48497 * 109.47596 * 240.00120 * 3 2 1 5 5 H 1.48498 * 109.47366 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46867 * 120.00181 * 3 2 1 7 7 C 1.38809 * 119.99389 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99640 * 161.20214 * 7 2 1 9 9 N 1.36938 * 120.00690 * 341.19880 * 7 2 1 10 10 C 1.47011 * 121.36829 * 339.47672 * 9 7 2 11 11 C 1.50324 * 109.16441 * 222.96760 * 10 9 7 12 12 C 1.29451 * 123.65379 * 349.02924 * 11 10 9 13 13 C 1.50701 * 117.69529 * 180.85506 * 12 11 10 14 14 C 1.53002 * 109.46836 * 94.99852 * 13 12 11 15 15 N 1.46502 * 109.46943 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99685 * 180.02562 * 15 14 13 17 17 O 1.21549 * 120.00566 * 0.02562 * 16 15 14 18 18 C 1.47844 * 119.99423 * 180.02562 * 16 15 14 19 19 C 1.40020 * 120.56036 * 354.28756 * 18 16 15 20 20 C 1.38359 * 118.28710 * 180.02562 * 19 18 16 21 21 C 1.38349 * 119.30583 * 0.02562 * 20 19 18 22 22 N 1.31926 * 121.07590 * 359.97438 * 21 20 19 23 23 C 1.31691 * 121.88455 * 359.74777 * 22 21 20 24 24 C 1.50702 * 119.72279 * 180.26983 * 23 22 21 25 25 C 1.52997 * 117.49650 * 352.05652 * 24 23 22 26 26 C 1.52993 * 117.49515 * 283.43670 * 24 23 22 27 27 C 1.49970 * 124.60900 * 1.13422 * 12 11 10 28 28 C 1.47336 * 121.38025 * 159.50266 * 9 7 2 29 29 H 0.97002 * 119.99860 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.52207 * 103.06450 * 10 9 7 31 31 H 1.09001 * 109.52453 * 342.87771 * 10 9 7 32 32 H 1.07999 * 118.17227 * 169.00255 * 11 10 9 33 33 H 1.09001 * 109.47139 * 214.99469 * 13 12 11 34 34 H 1.08996 * 109.46892 * 334.99961 * 13 12 11 35 35 H 1.09001 * 109.46944 * 299.99737 * 14 13 12 36 36 H 1.09005 * 109.47208 * 60.00104 * 14 13 12 37 37 H 0.96998 * 119.99799 * 0.02562 * 15 14 13 38 38 H 1.07994 * 120.85775 * 359.97438 * 19 18 16 39 39 H 1.08004 * 120.34966 * 180.02562 * 20 19 18 40 40 H 1.07994 * 119.46442 * 180.02562 * 21 20 19 41 41 H 1.08993 * 115.55174 * 137.76831 * 24 23 22 42 42 H 1.09005 * 117.49801 * 0.02562 * 25 24 23 43 43 H 1.09001 * 117.49685 * 145.02119 * 25 24 23 44 44 H 1.08998 * 117.50274 * 214.97509 * 26 24 23 45 45 H 1.09005 * 117.50178 * 359.97438 * 26 24 23 46 46 H 1.09001 * 109.31572 * 101.01054 * 27 12 11 47 47 H 1.08998 * 109.31618 * 220.44057 * 27 12 11 48 48 H 1.09003 * 109.77441 * 237.78867 * 28 9 7 49 49 H 1.08993 * 109.77782 * 358.59400 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0470 -1.2270 -0.3020 9 7 1.3803 -2.3567 0.3811 10 6 0.1602 -2.3277 1.2008 11 6 0.2556 -3.3849 2.2652 12 6 1.1658 -4.3052 2.2827 13 6 1.1236 -5.3108 3.4044 14 6 0.3668 -6.5579 2.9431 15 7 0.3252 -7.5352 4.0337 16 6 -0.2941 -8.7188 3.8547 17 8 -0.8179 -8.9756 2.7883 18 6 -0.3365 -9.7047 4.9555 19 6 0.3627 -9.4728 6.1462 20 6 0.2908 -10.4272 7.1453 21 6 -0.4619 -11.5694 6.9379 22 7 -1.1105 -11.7611 5.8052 23 6 -1.0774 -10.8800 4.8270 24 6 -1.8418 -11.1460 3.5557 25 6 -2.4780 -12.5275 3.3899 26 6 -1.2434 -12.1502 2.5687 27 6 2.2627 -4.4378 1.2687 28 6 1.8976 -3.6790 -0.0122 29 1 -0.4850 0.8401 0.0004 30 1 -0.7071 -2.5232 0.5700 31 1 0.0585 -1.3483 1.6682 32 1 -0.4757 -3.3758 3.0599 33 1 2.1406 -5.5858 3.6842 34 1 0.6154 -4.8747 4.2643 35 1 -0.6502 -6.2829 2.6632 36 1 0.8750 -6.9940 2.0830 37 1 0.7435 -7.3304 4.8845 38 1 0.9439 -8.5726 6.2810 39 1 0.8168 -10.2822 8.0775 40 1 -0.5201 -12.3158 7.7162 41 1 -2.3776 -10.2918 3.1419 42 1 -2.3440 -13.2439 4.2004 43 1 -3.4328 -12.5823 2.8670 44 1 -1.3860 -11.9570 1.5055 45 1 -0.2967 -12.6182 2.8386 46 1 3.1863 -4.0320 1.6815 47 1 2.4094 -5.4915 1.0318 48 1 1.1323 -4.2252 -0.5637 49 1 2.7851 -3.5580 -0.6332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160599666.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:38 Heat of formation + Delta-G solvation = 65.311317 kcal Electronic energy + Delta-G solvation = -28448.773489 eV Core-core repulsion = 24570.526351 eV Total energy + Delta-G solvation = -3878.247139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.16790 -39.28420 -37.90379 -37.11027 -35.46525 -33.78652 -32.90905 -31.63642 -31.26289 -29.84002 -28.71305 -25.79041 -24.83126 -24.59749 -23.04048 -22.54036 -22.37224 -21.28538 -20.89144 -20.75945 -18.09290 -17.61616 -17.32323 -16.71279 -16.04528 -15.86216 -15.45552 -15.38446 -15.02217 -14.86152 -14.53884 -14.23830 -14.00215 -13.79481 -13.63191 -13.45724 -13.30199 -12.96451 -12.63779 -12.24367 -12.09962 -11.99926 -11.64294 -11.59895 -11.43307 -11.06412 -10.98950 -10.91502 -10.71542 -10.66853 -10.34093 -10.30089 -10.27711 -10.21298 -9.80464 -9.67065 -9.52745 -9.36490 -9.10686 -8.64608 -7.92790 -6.77346 -5.78692 -3.13411 0.26177 0.72731 2.61821 2.74747 3.06784 3.34630 3.39147 3.44991 3.46242 3.72049 3.84937 4.22783 4.26748 4.35362 4.50493 4.60012 4.83279 4.87847 4.94122 4.98114 5.07435 5.17758 5.24778 5.26025 5.38130 5.53485 5.54324 5.54692 5.59467 5.62354 5.73586 5.77112 5.97732 5.98949 6.02895 6.06270 6.13080 6.18454 6.19819 6.29362 6.38116 6.54362 6.77587 6.89622 7.21905 7.24485 7.32881 7.40260 7.50739 7.74274 7.87997 7.98913 8.37546 9.20328 9.84306 10.41379 11.31743 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.001863 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.694892 B =15029.853745 C =15603.984614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.004 4.004 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.069 0.931 9 N -0.596 5.596 10 C 0.194 3.806 11 C -0.145 4.145 12 C -0.143 4.143 13 C -0.092 4.092 14 C 0.125 3.875 15 N -0.725 5.725 16 C 0.558 3.442 17 O -0.519 6.519 18 C -0.181 4.181 19 C -0.041 4.041 20 C -0.187 4.187 21 C 0.126 3.874 22 N -0.486 5.486 23 C 0.219 3.781 24 C -0.109 4.109 25 C -0.169 4.169 26 C -0.150 4.150 27 C -0.091 4.091 28 C 0.143 3.857 29 H 0.254 0.746 30 H 0.038 0.962 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.396 0.604 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.138 0.862 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.024 0.976 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 -23.336 15.515 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.202 4.202 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.319 5.319 10 C 0.069 3.931 11 C -0.165 4.165 12 C -0.144 4.144 13 C -0.130 4.130 14 C 0.003 3.997 15 N -0.377 5.377 16 C 0.344 3.656 17 O -0.396 6.396 18 C -0.187 4.187 19 C -0.068 4.068 20 C -0.207 4.207 21 C -0.032 4.032 22 N -0.195 5.195 23 C 0.081 3.919 24 C -0.127 4.127 25 C -0.206 4.206 26 C -0.188 4.188 27 C -0.130 4.130 28 C 0.016 3.984 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.231 0.769 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.179 0.821 41 H 0.155 0.845 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.119 0.881 45 H 0.107 0.893 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.042 0.958 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.271 -24.089 14.594 28.194 hybrid contribution 1.228 1.879 0.871 2.407 sum -0.043 -22.211 15.465 27.064 Atomic orbital electron populations 1.70042 1.05142 1.25567 1.54679 1.24901 0.95347 0.98236 1.01699 0.86340 0.78867 0.83403 0.78051 1.20968 1.21665 1.21188 1.19161 0.93443 0.84911 1.39842 0.91281 1.44172 1.29129 1.00528 1.58110 1.19751 0.88450 0.95901 0.88978 1.23118 0.96613 0.97206 0.99539 1.20209 0.99267 0.97265 0.97650 1.20914 1.00071 0.94135 0.97849 1.21486 1.01531 0.87652 0.89081 1.46024 1.57412 1.16789 1.17450 1.17969 0.78872 0.81472 0.87240 1.90785 1.44782 1.77459 1.26607 1.20795 1.03546 0.98079 0.96243 1.21786 0.94793 0.98638 0.91545 1.22105 1.02208 0.95678 1.00699 1.23003 0.90449 0.95655 0.94056 1.67528 1.20249 1.30854 1.00822 1.20580 0.90568 0.87536 0.93229 1.21063 1.03230 0.95401 0.93021 1.23008 0.97012 0.97669 1.02874 1.22835 0.97628 1.01105 0.97209 1.20790 0.96511 0.98987 0.96705 1.20981 0.97193 0.87216 0.92963 0.93597 0.94488 0.88807 0.89064 0.91470 0.91540 0.91031 0.90992 0.76901 0.84295 0.84008 0.82135 0.84463 0.87763 0.88633 0.88091 0.89331 0.91908 0.92910 0.95767 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.33 11.03 55.49 0.61 -25.71 16 2 C 0.00 -0.12 4.96 -17.43 -0.09 -0.20 16 3 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.72 9.72 -15.06 -0.15 -6.87 16 8 H 0.07 1.85 7.90 -52.48 -0.41 1.44 16 9 N -0.60 -15.05 3.01 -173.56 -0.52 -15.57 16 10 C 0.19 4.66 5.29 -5.10 -0.03 4.63 16 11 C -0.15 -2.77 9.47 -35.78 -0.34 -3.11 16 12 C -0.14 -2.41 5.11 -100.99 -0.52 -2.92 16 13 C -0.09 -1.14 5.32 -27.88 -0.15 -1.29 16 14 C 0.13 1.54 5.66 -4.04 -0.02 1.52 16 15 N -0.72 -7.40 5.51 -61.25 -0.34 -7.74 16 16 C 0.56 6.74 7.74 -12.33 -0.10 6.65 16 17 O -0.52 -7.86 13.57 5.32 0.07 -7.79 16 18 C -0.18 -1.87 5.89 -104.82 -0.62 -2.48 16 19 C -0.04 -0.29 9.64 -38.87 -0.37 -0.67 16 20 C -0.19 -1.10 10.10 -39.50 -0.40 -1.50 16 21 C 0.13 0.89 11.17 -17.47 -0.20 0.70 16 22 N -0.49 -4.90 9.31 -9.15 -0.09 -4.98 16 23 C 0.22 2.44 6.49 -82.17 -0.53 1.90 16 24 C -0.11 -1.23 4.35 -91.78 -0.40 -1.63 16 25 C -0.17 -1.59 10.02 -26.74 -0.27 -1.86 16 26 C -0.15 -1.53 10.23 -26.74 -0.27 -1.81 16 27 C -0.09 -1.58 5.95 -28.09 -0.17 -1.75 16 28 C 0.14 3.00 6.59 -3.44 -0.02 2.98 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.09 2.50 6.25 -51.93 -0.32 2.17 16 32 H 0.09 1.54 7.73 -52.49 -0.41 1.13 16 33 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 34 H 0.07 0.76 7.78 -51.93 -0.40 0.36 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 37 H 0.40 2.86 6.61 -40.82 -0.27 2.59 16 38 H 0.14 0.61 6.56 -52.49 -0.34 0.26 16 39 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16 40 H 0.16 0.64 8.06 -52.49 -0.42 0.21 16 41 H 0.14 1.74 6.56 -51.93 -0.34 1.40 16 42 H 0.10 0.99 7.57 -51.93 -0.39 0.60 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 LS Contribution 397.70 15.07 5.99 5.99 Total: -1.00 -32.54 397.70 -11.44 -43.98 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.51 Total: 2.83 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -4.63 Total: -7.71 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.33 Total: -54.00 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.07 Total: -7.79 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.54 -11.44 -43.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160599666.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.292 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds