Wall clock time and date at job start Sat Apr 11 2020 06:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99508 * 2 1 4 4 H 1.48500 * 109.47026 * 239.99699 * 3 2 1 5 5 H 1.48500 * 109.47247 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47447 * 119.99884 * 3 2 1 7 7 C 1.38803 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00236 * 177.76622 * 7 2 1 9 9 N 1.36940 * 120.00195 * 357.76769 * 7 2 1 10 10 C 1.46998 * 121.37576 * 333.88063 * 9 7 2 11 11 C 1.50320 * 109.16633 * 222.96833 * 10 9 7 12 12 C 1.29448 * 123.65291 * 349.01670 * 11 10 9 13 13 C 1.50699 * 117.69838 * 180.85820 * 12 11 10 14 14 C 1.53003 * 109.47018 * 95.00227 * 13 12 11 15 15 N 1.46492 * 109.47278 * 180.02562 * 14 13 12 16 16 C 1.34781 * 120.00445 * 180.02562 * 15 14 13 17 17 O 1.21285 * 119.99393 * 4.42569 * 16 15 14 18 18 C 1.50696 * 120.00373 * 184.42896 * 16 15 14 19 19 C 1.50692 * 115.55365 * 66.53143 * 18 16 15 20 20 C 1.38678 * 120.41497 * 31.12912 * 19 18 16 21 21 C 1.38631 * 118.41747 * 180.02562 * 20 19 18 22 22 C 1.38223 * 119.16247 * 359.97438 * 21 20 19 23 23 N 1.31857 * 120.76790 * 0.02562 * 22 21 20 24 24 C 1.31884 * 121.72134 * 359.97438 * 23 22 21 25 25 C 1.53000 * 117.49693 * 212.20542 * 18 16 15 26 26 C 1.53001 * 117.49712 * 280.86108 * 18 16 15 27 27 C 1.49972 * 124.60825 * 1.14211 * 12 11 10 28 28 C 1.47339 * 121.37554 * 153.89595 * 9 7 2 29 29 H 0.96998 * 120.00519 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.52825 * 103.05657 * 10 9 7 31 31 H 1.09001 * 109.52065 * 342.87325 * 10 9 7 32 32 H 1.08000 * 118.17629 * 168.99582 * 11 10 9 33 33 H 1.08997 * 109.47079 * 335.00360 * 13 12 11 34 34 H 1.09002 * 109.47732 * 215.00183 * 13 12 11 35 35 H 1.08997 * 109.47087 * 60.00138 * 14 13 12 36 36 H 1.09002 * 109.46834 * 300.00506 * 14 13 12 37 37 H 0.97003 * 120.00456 * 0.02562 * 15 14 13 38 38 H 1.07997 * 120.79081 * 0.04301 * 20 19 18 39 39 H 1.08000 * 120.42026 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.61755 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.61682 * 179.97438 * 24 23 22 42 42 H 1.09000 * 117.49765 * 214.99848 * 25 18 16 43 43 H 1.09001 * 117.50195 * 0.02562 * 25 18 16 44 44 H 1.09003 * 117.50174 * 359.97438 * 26 18 16 45 45 H 1.09004 * 117.50016 * 144.99936 * 26 18 16 46 46 H 1.09008 * 109.31269 * 101.00945 * 27 12 11 47 47 H 1.08999 * 109.31376 * 220.43490 * 27 12 11 48 48 H 1.08992 * 109.78275 * 237.79149 * 28 9 7 49 49 H 1.08997 * 109.77887 * 358.60199 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6967 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0897 -1.2024 -0.0359 9 7 1.3265 -2.3876 0.0473 10 6 -0.0126 -2.4756 0.6472 11 6 -0.0945 -3.7165 1.4916 12 6 0.8006 -4.6515 1.4814 13 6 0.5736 -5.8483 2.3686 14 6 -0.0954 -6.9623 1.5609 15 7 -0.3167 -8.1255 2.4234 16 6 -0.8970 -9.2346 1.9236 17 8 -1.1629 -9.2998 0.7420 18 6 -1.2156 -10.3934 2.8327 19 6 -2.2754 -10.1323 3.8716 20 6 -3.3085 -9.2441 3.6128 21 6 -4.2608 -9.0346 4.5983 22 6 -4.1500 -9.7135 5.7972 23 7 -3.1538 -10.5510 6.0086 24 6 -2.2301 -10.7748 5.0942 25 6 -1.1429 -11.8003 2.2358 26 6 -0.0660 -11.3277 3.2156 27 6 2.0508 -4.6249 0.6533 28 6 1.9027 -3.6276 -0.5014 29 1 -0.4851 0.8400 -0.0004 30 1 -0.7631 -2.5218 -0.1420 31 1 -0.1911 -1.5989 1.2698 32 1 -0.9475 -3.8344 2.1434 33 1 -0.0706 -5.5663 3.2013 34 1 1.5302 -6.2025 2.7529 35 1 0.5488 -7.2444 0.7281 36 1 -1.0520 -6.6081 1.1765 37 1 -0.0456 -8.0977 3.3543 38 1 -3.3699 -8.7282 2.6661 39 1 -5.0794 -8.3502 4.4310 40 1 -4.8881 -9.5561 6.5698 41 1 -1.4286 -11.4676 5.3037 42 1 -1.8616 -12.5370 2.5946 43 1 -0.8642 -11.8877 1.1856 44 1 0.9206 -11.1044 2.8095 45 1 -0.0763 -11.7534 4.2190 46 1 2.8928 -4.3329 1.2810 47 1 2.2353 -5.6193 0.2470 48 1 1.2401 -4.0364 -1.2641 49 1 2.8809 -3.4196 -0.9348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160986018.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:42 Heat of formation + Delta-G solvation = 62.457201 kcal Electronic energy + Delta-G solvation = -28671.803875 eV Core-core repulsion = 24793.432972 eV Total energy + Delta-G solvation = -3878.370902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.17403 -39.74926 -37.98775 -37.04071 -35.44147 -33.58328 -32.82985 -31.41028 -31.23712 -29.82549 -28.81561 -26.06645 -24.93518 -24.07990 -23.37607 -22.73877 -22.61903 -22.09787 -20.95509 -19.92103 -18.08330 -17.62432 -17.30678 -16.51012 -16.31970 -15.85915 -15.61027 -15.30353 -15.02330 -14.92502 -14.46171 -14.22324 -14.04394 -13.83807 -13.57741 -13.40647 -13.24747 -13.14322 -12.62855 -12.46565 -12.19960 -11.98441 -11.91994 -11.62847 -11.54109 -11.39587 -11.13466 -11.01074 -10.81837 -10.77998 -10.36279 -10.31301 -10.15572 -10.08264 -9.85375 -9.72543 -9.53705 -9.27128 -9.19480 -8.69022 -7.88993 -6.68965 -5.76364 -3.21300 0.63211 0.86735 2.28309 2.74334 3.04191 3.16228 3.38415 3.43228 3.44062 3.54141 3.86881 4.13118 4.30732 4.31160 4.42907 4.48489 4.54469 4.58095 4.82753 4.99905 5.09036 5.09549 5.15025 5.26351 5.29652 5.38167 5.42771 5.43443 5.55309 5.63858 5.64550 5.72767 5.78781 5.82932 5.99501 6.03508 6.14741 6.21808 6.25072 6.30254 6.40170 6.57431 6.80509 6.91519 7.26413 7.30063 7.41316 7.45903 7.54532 7.73776 7.94997 7.99026 8.43618 9.23244 9.83659 10.42405 11.31628 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.002044 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.751034 B =13698.521494 C =14582.624964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.002 4.002 3 Si 0.909 3.091 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.242 4.242 8 H 0.068 0.932 9 N -0.598 5.598 10 C 0.192 3.808 11 C -0.145 4.145 12 C -0.147 4.147 13 C -0.091 4.091 14 C 0.124 3.876 15 N -0.721 5.721 16 C 0.550 3.450 17 O -0.531 6.531 18 C -0.123 4.123 19 C -0.093 4.093 20 C -0.063 4.063 21 C -0.164 4.164 22 C 0.095 3.905 23 N -0.480 5.480 24 C 0.101 3.899 25 C -0.131 4.131 26 C -0.156 4.156 27 C -0.091 4.091 28 C 0.143 3.857 29 H 0.254 0.746 30 H 0.035 0.965 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.401 0.599 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.061 0.939 47 H 0.051 0.949 48 H 0.024 0.976 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 -23.532 10.919 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.739 3.261 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.371 4.371 8 H 0.085 0.915 9 N -0.321 5.321 10 C 0.067 3.933 11 C -0.164 4.164 12 C -0.148 4.148 13 C -0.128 4.128 14 C 0.001 3.999 15 N -0.372 5.372 16 C 0.335 3.665 17 O -0.407 6.407 18 C -0.127 4.127 19 C -0.095 4.095 20 C -0.089 4.089 21 C -0.184 4.184 22 C -0.062 4.062 23 N -0.188 5.188 24 C -0.056 4.056 25 C -0.168 4.168 26 C -0.193 4.193 27 C -0.130 4.130 28 C 0.016 3.984 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.234 0.766 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.175 0.825 41 H 0.174 0.826 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.042 0.958 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.026 -23.801 10.848 26.635 hybrid contribution 0.346 1.435 -0.293 1.505 sum -4.679 -22.367 10.555 25.171 Atomic orbital electron populations 1.69904 1.05145 1.25418 1.55661 1.25105 0.95628 0.98157 1.01038 0.86264 0.78679 0.83153 0.78023 1.20958 1.21583 1.21080 1.19172 0.90270 0.83199 1.44502 0.91468 1.44123 1.16926 1.04327 1.66728 1.19908 0.86377 0.92982 0.94026 1.23211 0.96754 0.97782 0.98688 1.20200 0.98292 0.95228 1.01037 1.20898 1.00289 0.94112 0.97536 1.21488 1.01097 0.83972 0.93327 1.46055 1.61694 1.14601 1.14813 1.19247 0.77286 0.82487 0.87501 1.90741 1.52698 1.81075 1.16162 1.20058 1.00201 0.92503 0.99909 1.19745 0.95768 0.99062 0.94925 1.21497 0.92540 0.95460 0.99435 1.22192 1.00245 1.01270 0.94649 1.22832 0.95386 0.91868 0.96098 1.67749 1.02595 1.15821 1.32661 1.22649 0.96813 0.97628 0.88493 1.23112 1.00959 0.92548 1.00220 1.23238 0.94072 1.00613 1.01329 1.20785 0.95113 0.98972 0.98089 1.20992 0.97258 0.87479 0.92645 0.93533 0.94753 0.87682 0.89247 0.91620 0.91503 0.91092 0.91301 0.76559 0.84877 0.84349 0.82511 0.82600 0.87607 0.87084 0.87468 0.87243 0.92014 0.93012 0.95790 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.50 55.49 0.58 -25.78 16 2 C 0.00 -0.06 5.28 -17.43 -0.09 -0.15 16 3 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.66 9.74 -15.06 -0.15 -6.81 16 8 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 9 N -0.60 -15.18 3.02 -173.57 -0.52 -15.71 16 10 C 0.19 4.65 5.22 -5.11 -0.03 4.62 16 11 C -0.14 -2.81 9.47 -35.78 -0.34 -3.15 16 12 C -0.15 -2.52 5.11 -100.99 -0.52 -3.04 16 13 C -0.09 -1.17 5.32 -27.88 -0.15 -1.31 16 14 C 0.12 1.57 5.66 -4.04 -0.02 1.54 16 15 N -0.72 -7.52 5.55 -60.30 -0.33 -7.85 16 16 C 0.55 6.39 6.02 -10.99 -0.07 6.33 16 17 O -0.53 -8.32 16.73 5.55 0.09 -8.23 16 18 C -0.12 -1.05 2.36 -156.82 -0.37 -1.42 16 19 C -0.09 -0.79 5.48 -104.48 -0.57 -1.37 16 20 C -0.06 -0.58 9.44 -39.27 -0.37 -0.95 16 21 C -0.16 -1.27 10.11 -39.44 -0.40 -1.67 16 22 C 0.09 0.75 11.18 -17.55 -0.20 0.55 16 23 N -0.48 -4.50 10.36 -13.25 -0.14 -4.64 16 24 C 0.10 0.82 10.54 -17.55 -0.18 0.64 16 25 C -0.13 -0.96 9.75 -26.70 -0.26 -1.22 16 26 C -0.16 -0.93 9.58 -26.70 -0.26 -1.18 16 27 C -0.09 -1.60 5.95 -28.09 -0.17 -1.77 16 28 C 0.14 3.02 6.59 -3.43 -0.02 3.00 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.11 2.84 6.11 -51.93 -0.32 2.52 16 32 H 0.09 1.55 7.73 -52.49 -0.41 1.14 16 33 H 0.07 0.80 7.78 -51.93 -0.40 0.40 16 34 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 35 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.40 3.31 8.48 -40.82 -0.35 2.96 16 38 H 0.13 1.31 7.47 -52.49 -0.39 0.92 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.16 0.90 5.96 -52.49 -0.31 0.59 16 42 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.11 0.93 8.01 -51.93 -0.42 0.51 16 44 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.11 0.44 6.12 -51.93 -0.32 0.12 16 46 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 47 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 LS Contribution 400.90 15.07 6.04 6.04 Total: -1.00 -32.69 400.90 -10.98 -43.67 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.52 Total: 3.14 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -4.16 Total: -7.36 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.41 Total: -53.97 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.69 -10.98 -43.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160986018.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.124 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds