Wall clock time and date at job start Sat Apr 11 2020 06:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99672 * 2 1 4 4 H 1.48494 * 109.47452 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47051 * 119.99849 * 3 2 1 6 6 H 1.48495 * 109.46949 * 239.99505 * 3 2 1 7 7 C 1.38807 * 119.99854 * 180.27114 * 2 1 3 8 8 H 1.08004 * 119.99668 * 154.25982 * 7 2 1 9 9 N 1.36937 * 120.00653 * 334.26413 * 7 2 1 10 10 C 1.47009 * 121.37081 * 335.38541 * 9 7 2 11 11 C 1.49922 * 109.38817 * 222.83043 * 10 9 7 12 12 C 1.29458 * 123.62825 * 349.43028 * 11 10 9 13 13 C 1.50701 * 117.69110 * 180.62046 * 12 11 10 14 14 C 1.52997 * 109.47239 * 94.98078 * 13 12 11 15 15 N 1.46500 * 109.46986 * 179.97438 * 14 13 12 16 16 C 1.34780 * 119.99840 * 180.02562 * 15 14 13 17 17 O 1.21290 * 120.00042 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00092 * 180.02562 * 16 15 14 19 19 H 1.08998 * 110.72685 * 300.69559 * 18 16 15 20 20 C 1.54369 * 110.82022 * 177.29502 * 18 16 15 21 21 C 1.51539 * 104.96755 * 215.62962 * 20 18 16 22 22 C 1.38736 * 130.61425 * 197.11652 * 21 20 18 23 23 C 1.38581 * 118.55573 * 179.73509 * 22 21 20 24 24 C 1.38224 * 118.99228 * 359.97438 * 23 22 21 25 25 N 1.31691 * 120.80010 * 359.97438 * 24 23 22 26 26 C 1.32298 * 122.02818 * 0.02562 * 25 24 23 27 27 C 1.51477 * 130.13690 * 179.97438 * 26 25 24 28 28 C 1.49972 * 124.61450 * 0.60005 * 12 11 10 29 29 C 1.47334 * 121.38061 * 155.66606 * 9 7 2 30 30 H 0.96999 * 119.99300 * 174.15204 * 1 2 3 31 31 H 1.09001 * 109.52220 * 342.85676 * 10 9 7 32 32 H 1.08999 * 109.52119 * 103.04116 * 10 9 7 33 33 H 1.07992 * 118.19708 * 169.17114 * 11 10 9 34 34 H 1.09004 * 109.46938 * 214.97713 * 13 12 11 35 35 H 1.08996 * 109.47441 * 334.97633 * 13 12 11 36 36 H 1.08998 * 109.47133 * 300.00046 * 14 13 12 37 37 H 1.09006 * 109.47263 * 59.99603 * 14 13 12 38 38 H 0.96996 * 120.00682 * 359.97438 * 15 14 13 39 39 H 1.09003 * 110.31365 * 334.39246 * 20 18 16 40 40 H 1.09000 * 110.31604 * 96.57774 * 20 18 16 41 41 H 1.08002 * 120.72521 * 359.74685 * 22 21 20 42 42 H 1.08004 * 120.50186 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.59917 * 180.02562 * 24 23 22 44 44 H 1.09007 * 110.29323 * 43.83463 * 27 26 25 45 45 H 1.08998 * 110.29739 * 281.70293 * 27 26 25 46 46 H 1.08996 * 109.31191 * 220.74315 * 28 12 11 47 47 H 1.08994 * 109.31619 * 101.30854 * 28 12 11 48 48 H 1.08998 * 109.78305 * 237.81661 * 29 9 7 49 49 H 1.09004 * 109.77740 * 358.62512 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0103 -1.2021 -0.0057 8 1 3.0099 -1.2466 -0.4121 9 7 1.4276 -2.3317 0.5039 10 6 0.3592 -2.2541 1.5108 11 6 0.5985 -3.2869 2.5709 12 6 1.4820 -4.2276 2.4689 13 6 1.6002 -5.2041 3.6106 14 6 0.7553 -6.4439 3.3108 15 7 0.8707 -7.3934 4.4204 16 6 0.2081 -8.5662 4.3755 17 8 -0.4841 -8.8353 3.4165 18 6 0.3263 -9.5428 5.5171 19 1 1.3647 -9.8390 5.6655 20 6 -0.5678 -10.7782 5.2773 21 6 -1.0776 -11.1650 6.6509 22 6 -1.6488 -12.3459 7.1026 23 6 -2.0261 -12.4325 8.4333 24 6 -1.8205 -11.3442 9.2602 25 7 -1.2743 -10.2391 8.7971 26 6 -0.9008 -10.1171 7.5338 27 6 -0.2635 -8.9473 6.8126 28 6 2.3960 -4.4143 1.2946 29 6 1.8496 -3.6751 0.0702 30 1 -0.4849 -0.8357 -0.0856 31 1 0.3562 -1.2623 1.9629 32 1 -0.6036 -2.4417 1.0355 33 1 0.0038 -3.2413 3.4711 34 1 2.6433 -5.4961 3.7325 35 1 1.2446 -4.7352 4.5281 36 1 -0.2877 -6.1520 3.1889 37 1 1.1110 -6.9128 2.3933 38 1 1.4246 -7.1785 5.1872 39 1 -1.4015 -10.5208 4.6239 40 1 0.0167 -11.5900 4.8444 41 1 -1.7961 -13.1795 6.4320 42 1 -2.4734 -13.3370 8.8185 43 1 -2.1105 -11.4012 10.2990 44 1 0.5270 -8.5116 7.4237 45 1 -1.0156 -8.1954 6.5736 46 1 2.4780 -5.4771 1.0671 47 1 3.3834 -4.0238 1.5406 48 1 0.9956 -4.2165 -0.3369 49 1 2.6287 -3.5903 -0.6874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161779880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:01 Heat of formation + Delta-G solvation = 26.291837 kcal Electronic energy + Delta-G solvation = -28125.813447 eV Core-core repulsion = 24245.874297 eV Total energy + Delta-G solvation = -3879.939150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.34306 -39.85109 -38.13875 -36.42619 -35.56383 -33.81156 -33.06904 -31.50517 -30.36058 -29.85347 -28.52509 -28.21322 -25.61875 -24.42550 -22.93490 -22.68710 -22.29757 -21.90527 -21.02110 -20.18660 -17.88442 -17.72005 -17.11134 -16.82566 -16.52568 -16.06805 -15.64143 -15.28565 -15.14534 -14.63419 -14.41893 -14.06504 -13.98736 -13.69102 -13.62815 -13.40282 -13.36533 -13.28398 -12.98228 -12.84132 -12.36382 -12.17044 -12.03027 -11.88253 -11.78039 -11.74261 -11.59575 -11.13878 -10.69601 -10.68400 -10.44888 -10.18934 -10.10161 -10.00287 -9.89281 -9.73353 -9.37973 -9.26235 -9.14454 -8.47787 -8.08814 -6.91096 -6.06105 -3.18374 0.64979 0.84855 2.32977 2.65372 2.99265 3.32232 3.45964 3.50721 3.54042 3.72222 3.94512 4.17636 4.37677 4.43861 4.49270 4.60860 4.69506 4.75589 4.84140 5.00936 5.07295 5.10333 5.15281 5.22024 5.27837 5.28176 5.31162 5.48865 5.50628 5.53021 5.62441 5.70759 5.72545 5.79132 5.89445 5.94481 6.04506 6.09744 6.22936 6.25921 6.28250 6.39763 6.67227 6.70768 6.91487 6.93346 7.20065 7.26006 7.56135 7.60599 7.95682 7.96547 8.57148 9.10755 9.85635 10.31865 11.23756 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030726 B = 0.001638 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.058179 B =17086.697098 C =17448.043693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.026 4.026 3 Si 1.064 2.936 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.346 4.346 8 H 0.058 0.942 9 N -0.600 5.600 10 C 0.175 3.825 11 C -0.147 4.147 12 C -0.133 4.133 13 C -0.093 4.093 14 C 0.123 3.877 15 N -0.726 5.726 16 C 0.521 3.479 17 O -0.534 6.534 18 C -0.110 4.110 19 H 0.112 0.888 20 C -0.064 4.064 21 C -0.144 4.144 22 C -0.064 4.064 23 C -0.173 4.173 24 C 0.101 3.899 25 N -0.478 5.478 26 C 0.119 3.881 27 C -0.060 4.060 28 C -0.093 4.093 29 C 0.145 3.855 30 H 0.268 0.732 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.401 0.599 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.158 0.842 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.022 0.978 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.067 -25.353 17.660 30.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.227 4.227 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.475 4.475 8 H 0.076 0.924 9 N -0.325 5.325 10 C 0.050 3.950 11 C -0.166 4.166 12 C -0.134 4.134 13 C -0.130 4.130 14 C 0.000 4.000 15 N -0.378 5.378 16 C 0.307 3.693 17 O -0.410 6.410 18 C -0.132 4.132 19 H 0.130 0.870 20 C -0.102 4.102 21 C -0.146 4.146 22 C -0.090 4.090 23 C -0.193 4.193 24 C -0.056 4.056 25 N -0.187 5.187 26 C -0.019 4.019 27 C -0.098 4.098 28 C -0.132 4.132 29 C 0.018 3.982 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.235 0.765 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.152 0.848 42 H 0.156 0.844 43 H 0.175 0.825 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.040 0.960 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.473 -23.135 17.565 29.051 hybrid contribution 0.311 -2.428 -0.078 2.449 sum -0.162 -25.563 17.487 30.972 Atomic orbital electron populations 1.70797 1.06565 1.30253 1.48259 1.25808 0.96519 1.01317 0.99099 0.83539 0.74801 0.76137 0.76157 1.21097 1.22137 1.22008 1.19950 0.98005 0.88318 1.41180 0.92418 1.44173 1.43296 1.01082 1.43943 1.19769 0.91028 0.96502 0.87707 1.22774 0.97197 0.97046 0.99587 1.20274 0.99651 0.97086 0.96382 1.20916 0.99844 0.94335 0.97940 1.21455 1.00944 0.88493 0.89072 1.46087 1.49932 1.18397 1.23348 1.20197 0.79432 0.82046 0.87668 1.90735 1.39397 1.76341 1.34528 1.21997 1.02253 0.95425 0.93502 0.86977 1.20922 0.99903 0.96209 0.93147 1.21542 1.00244 0.95159 0.97700 1.21095 0.95423 0.96769 0.95688 1.22101 1.02079 1.00695 0.94401 1.22656 0.94804 0.88019 1.00168 1.66849 1.10541 1.26226 1.15063 1.21688 0.95737 0.95355 0.89089 1.20895 1.00664 0.95114 0.93156 1.20771 0.98086 0.99042 0.95257 1.20947 0.97050 0.86703 0.93451 0.92044 0.90009 0.95031 0.88713 0.91238 0.91323 0.91195 0.91151 0.76524 0.87807 0.89639 0.84805 0.84439 0.82464 0.88690 0.88630 0.92673 0.91713 0.96028 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.60 12.56 55.49 0.70 -26.90 16 2 C -0.03 -0.73 4.73 -17.43 -0.08 -0.82 16 3 Si 1.06 25.30 29.99 -169.99 -5.10 20.21 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.35 -9.72 9.58 -15.06 -0.14 -9.87 16 8 H 0.06 1.62 7.95 -52.48 -0.42 1.20 16 9 N -0.60 -15.22 2.89 -173.90 -0.50 -15.72 16 10 C 0.18 4.14 4.87 -5.29 -0.03 4.11 16 11 C -0.15 -2.76 9.46 -35.97 -0.34 -3.10 16 12 C -0.13 -2.22 5.11 -100.99 -0.52 -2.74 16 13 C -0.09 -1.12 5.32 -27.88 -0.15 -1.26 16 14 C 0.12 1.46 5.66 -4.04 -0.02 1.44 16 15 N -0.73 -6.65 5.54 -60.29 -0.33 -6.98 16 16 C 0.52 5.41 7.05 -10.98 -0.08 5.34 16 17 O -0.53 -7.82 15.53 5.55 0.09 -7.74 16 18 C -0.11 -0.80 3.45 -90.38 -0.31 -1.11 16 19 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 20 C -0.06 -0.51 6.11 -26.75 -0.16 -0.67 16 21 C -0.14 -1.21 6.16 -104.05 -0.64 -1.85 16 22 C -0.06 -0.44 10.17 -39.27 -0.40 -0.84 16 23 C -0.17 -1.07 10.12 -39.46 -0.40 -1.47 16 24 C 0.10 0.76 11.18 -17.62 -0.20 0.56 16 25 N -0.48 -4.79 10.35 -9.19 -0.10 -4.89 16 26 C 0.12 1.10 7.32 -82.04 -0.60 0.50 16 27 C -0.06 -0.44 6.30 -26.82 -0.17 -0.61 16 28 C -0.09 -1.61 5.95 -28.18 -0.17 -1.78 16 29 C 0.14 3.07 6.58 -3.53 -0.02 3.05 16 30 H 0.27 8.12 6.38 -40.82 -0.26 7.86 16 31 H 0.08 2.14 6.78 -51.93 -0.35 1.79 16 32 H 0.03 0.78 7.40 -51.93 -0.38 0.40 16 33 H 0.09 1.56 7.73 -52.49 -0.41 1.16 16 34 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 35 H 0.07 0.76 7.78 -51.93 -0.40 0.36 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.40 2.49 8.47 -40.82 -0.35 2.14 16 39 H 0.10 1.01 7.02 -51.93 -0.36 0.64 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 43 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 45 H 0.10 0.77 7.88 -51.93 -0.41 0.36 16 46 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -34.73 395.96 -11.33 -46.06 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.62 Total: 1.12 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -4.43 Total: -11.12 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.23 Total: -54.49 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.09 Total: -7.74 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.10 Total: 20.21 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.73 -11.33 -46.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161779880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.348 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds