Wall clock time and date at job start Sat Apr 11 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48500 * 109.46940 * 269.99802 * 3 2 1 5 5 H 1.48500 * 109.46900 * 29.99523 * 3 2 1 6 6 H 1.48495 * 109.47197 * 149.99605 * 3 2 1 7 7 C 1.38814 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00004 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00165 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46998 * 180.02562 * 10 9 7 12 12 N 1.46508 * 109.46928 * 180.02562 * 11 10 9 13 13 C 1.46497 * 119.99666 * 269.99727 * 12 11 10 14 14 C 1.52998 * 109.47316 * 270.00069 * 13 12 11 15 15 C 1.50705 * 109.47262 * 180.02562 * 14 13 12 16 16 C 1.38235 * 119.99697 * 269.72664 * 15 14 13 17 17 C 1.38241 * 119.99618 * 179.77131 * 16 15 14 18 18 C 1.38233 * 119.99724 * 0.49885 * 17 16 15 19 19 C 1.38231 * 120.00317 * 359.75454 * 18 17 16 20 20 C 1.38229 * 119.99954 * 90.00060 * 15 14 13 21 21 C 1.34777 * 120.00399 * 89.99664 * 12 11 10 22 22 O 1.21269 * 119.99905 * 179.97438 * 21 12 11 23 23 C 1.50702 * 119.99578 * 359.97438 * 21 12 11 24 24 C 1.50704 * 109.46762 * 179.97438 * 23 21 12 25 25 C 1.34845 * 125.88833 * 85.00052 * 24 23 21 26 26 C 1.40883 * 107.41891 * 180.02562 * 25 24 23 27 27 C 1.34854 * 107.41814 * 0.02562 * 26 25 24 28 28 N 1.36343 * 108.21624 * 0.26031 * 27 26 25 29 29 H 0.96994 * 125.63652 * 179.73195 * 28 27 26 30 30 H 0.97004 * 119.99745 * 0.02562 * 1 2 3 31 31 H 0.97007 * 119.99791 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.46803 * 60.00429 * 10 9 7 33 33 H 1.08997 * 109.47082 * 300.00381 * 10 9 7 34 34 H 1.08995 * 109.47354 * 60.00429 * 11 10 9 35 35 H 1.09003 * 109.47269 * 299.99496 * 11 10 9 36 36 H 1.09010 * 109.47552 * 29.99920 * 13 12 11 37 37 H 1.08997 * 109.47611 * 149.99710 * 13 12 11 38 38 H 1.08998 * 109.47300 * 300.00057 * 14 13 12 39 39 H 1.09002 * 109.47387 * 60.00182 * 14 13 12 40 40 H 1.07998 * 120.00408 * 359.97438 * 16 15 14 41 41 H 1.07995 * 120.00007 * 180.23262 * 17 16 15 42 42 H 1.07998 * 119.99698 * 179.72804 * 18 17 16 43 43 H 1.07995 * 120.00160 * 179.97438 * 19 18 17 44 44 H 1.08003 * 120.00339 * 0.02562 * 20 15 14 45 45 H 1.09007 * 109.46806 * 60.00106 * 23 21 12 46 46 H 1.08998 * 109.47448 * 300.00182 * 23 21 12 47 47 H 1.08010 * 126.29114 * 0.04613 * 25 24 23 48 48 H 1.08008 * 126.29481 * 179.97438 * 26 25 24 49 49 H 1.08002 * 125.89007 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0016 11 6 1.0636 -4.8197 0.0022 12 7 1.7961 -6.0885 0.0029 13 6 2.1622 -6.7235 -1.2656 14 6 1.0404 -7.6657 -1.7067 15 6 1.4173 -8.3194 -3.0113 16 6 1.0670 -7.7246 -4.2089 17 6 1.4169 -8.3218 -5.4056 18 6 2.1079 -9.5190 -5.4044 19 6 2.4535 -10.1165 -4.2068 20 6 2.1082 -9.5166 -3.0102 21 6 2.1332 -6.6715 1.1703 22 8 2.7391 -7.7220 1.1707 23 6 1.7571 -6.0180 2.4751 24 6 2.2462 -6.8659 3.6209 25 6 3.4818 -6.8300 4.1597 26 6 3.5157 -7.7787 5.2007 27 6 2.2996 -8.3586 5.2581 28 7 1.5180 -7.8068 4.2868 29 1 0.5955 -8.0426 4.1019 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3881 0.0016 32 1 2.6852 -3.7142 0.8912 33 1 2.6839 -3.7150 -0.8888 34 1 0.4367 -4.7622 -0.8875 35 1 0.4373 -4.7618 0.8925 36 1 2.3126 -5.9568 -2.0257 37 1 3.0834 -7.2913 -1.1352 38 1 0.8900 -8.4324 -0.9467 39 1 0.1192 -7.0979 -1.8373 40 1 0.5230 -6.7916 -4.2098 41 1 1.1465 -7.8552 -6.3412 42 1 2.3773 -9.9878 -6.3393 43 1 2.9930 -11.0520 -4.2059 44 1 2.3776 -9.9839 -2.0744 45 1 0.6730 -5.9198 2.5330 46 1 2.2149 -5.0304 2.5321 47 1 4.2959 -6.1911 3.8503 48 1 4.3607 -8.0013 5.8356 49 1 1.9984 -9.1306 5.9507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163001739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:04 Heat of formation + Delta-G solvation = 44.263678 kcal Electronic energy + Delta-G solvation = -28676.394387 eV Core-core repulsion = 24797.234554 eV Total energy + Delta-G solvation = -3879.159833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.12583 -39.87266 -39.18438 -36.30158 -34.66545 -33.36181 -31.77836 -31.24586 -31.01048 -30.83557 -28.94116 -27.51063 -26.40289 -23.97355 -23.59661 -22.69304 -21.72025 -21.14456 -20.56622 -20.13535 -19.11114 -17.56008 -17.33390 -16.96912 -16.70906 -16.03272 -15.37523 -15.30664 -15.10857 -14.60179 -14.12387 -13.89787 -13.75876 -13.61162 -13.48564 -13.41577 -13.33223 -13.23384 -13.17216 -13.03518 -12.54113 -12.41987 -12.17973 -12.08167 -11.61088 -11.44565 -11.32104 -11.18684 -11.12290 -10.95752 -10.82694 -10.79387 -10.16108 -9.82772 -9.72416 -9.04882 -8.99264 -8.95459 -8.74524 -8.46468 -7.94677 -7.03199 -5.84292 -3.14184 1.20587 1.27334 2.26763 2.71611 2.96839 3.22908 3.39831 3.40306 3.46365 3.47547 3.66673 4.52408 4.64391 4.70583 4.74181 4.83148 4.87636 5.00726 5.06066 5.10193 5.19707 5.20574 5.24910 5.39131 5.42378 5.51482 5.52418 5.53259 5.61350 5.66506 5.73601 5.80530 5.82518 5.86447 5.95684 6.03428 6.08621 6.30326 6.32574 6.37996 6.41339 6.44014 6.52780 6.61716 6.75173 6.87965 7.07501 7.20730 7.44559 7.64275 7.65162 8.26408 8.33993 9.45644 9.99227 10.33989 11.38257 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.005439 B = 0.003614 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5146.313264 B = 7746.107502 C =12313.781753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.138 3.862 11 C 0.098 3.902 12 N -0.607 5.607 13 C 0.123 3.877 14 C -0.095 4.095 15 C -0.077 4.077 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.127 4.127 19 C -0.121 4.121 20 C -0.114 4.114 21 C 0.518 3.482 22 O -0.534 6.534 23 C -0.076 4.076 24 C 0.039 3.961 25 C -0.181 4.181 26 C -0.200 4.200 27 C -0.018 4.018 28 N -0.554 5.554 29 H 0.410 0.590 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.098 0.902 46 H 0.122 0.878 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 -20.700 -1.052 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.009 3.991 11 C -0.026 4.026 12 N -0.340 5.340 13 C 0.000 4.000 14 C -0.133 4.133 15 C -0.077 4.077 16 C -0.133 4.133 17 C -0.138 4.138 18 C -0.145 4.145 19 C -0.139 4.139 20 C -0.132 4.132 21 C 0.306 3.694 22 O -0.410 6.410 23 C -0.116 4.116 24 C -0.074 4.074 25 C -0.205 4.205 26 C -0.225 4.225 27 C -0.149 4.149 28 N -0.149 5.149 29 H 0.245 0.755 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.116 0.884 46 H 0.140 0.860 47 H 0.150 0.850 48 H 0.150 0.850 49 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.762 -21.169 -1.062 21.209 hybrid contribution -0.293 0.938 -0.192 1.001 sum 0.469 -20.231 -1.254 20.275 Atomic orbital electron populations 1.69649 1.05118 1.25811 1.57525 1.24737 0.95538 0.97734 1.02697 0.86183 0.78733 0.83671 0.77577 1.21654 1.21708 1.20654 1.19193 0.91063 0.83887 1.43096 0.91112 1.42213 1.05804 0.99743 1.89786 1.21004 0.93838 0.85616 0.98638 1.21912 0.94825 0.82275 1.03547 1.47938 1.57372 1.23147 1.05551 1.21404 0.97614 0.96055 0.84903 1.20970 0.99338 0.99042 0.93989 1.19808 0.98093 0.95097 0.94738 1.21137 1.00224 0.99972 0.91956 1.21157 0.98729 0.95825 0.98042 1.21139 0.99300 0.96105 0.97964 1.21140 1.00170 1.00000 0.92560 1.21121 0.98376 0.95425 0.98267 1.20538 0.78883 0.84874 0.85135 1.90693 1.40231 1.22787 1.87304 1.20250 1.02964 0.99596 0.88783 1.19574 0.93102 0.96573 0.98177 1.20641 0.96102 1.03674 1.00133 1.20843 0.97377 1.01707 1.02610 1.21715 0.92495 1.03553 0.97091 1.41865 1.13421 1.31461 1.28122 0.75460 0.93427 0.78243 0.95979 0.95909 0.89965 0.90117 0.90056 0.89821 0.90750 0.90670 0.85828 0.86100 0.86329 0.86234 0.86004 0.88390 0.86010 0.84985 0.85001 0.82238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.09 13.06 55.49 0.72 -26.37 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.18 5.60 -59.91 -0.34 -17.52 16 10 C 0.14 2.53 6.58 -4.04 -0.03 2.50 16 11 C 0.10 1.36 5.33 -4.04 -0.02 1.34 16 12 N -0.61 -8.07 2.47 -173.69 -0.43 -8.50 16 13 C 0.12 1.54 5.39 -4.04 -0.02 1.52 16 14 C -0.09 -1.05 5.67 -27.88 -0.16 -1.21 16 15 C -0.08 -0.85 5.13 -104.62 -0.54 -1.39 16 16 C -0.11 -1.21 9.70 -39.58 -0.38 -1.59 16 17 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 18 C -0.13 -1.18 10.05 -39.59 -0.40 -1.58 16 19 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 20 C -0.11 -1.23 9.70 -39.59 -0.38 -1.61 16 21 C 0.52 7.45 7.67 -10.98 -0.08 7.36 16 22 O -0.53 -9.21 15.61 5.57 0.09 -9.13 16 23 C -0.08 -0.95 4.79 -29.03 -0.14 -1.09 16 24 C 0.04 0.52 5.66 -81.79 -0.46 0.06 16 25 C -0.18 -2.59 10.76 -39.79 -0.43 -3.02 16 26 C -0.20 -2.55 10.86 -39.78 -0.43 -2.98 16 27 C -0.02 -0.19 11.94 -16.75 -0.20 -0.39 16 28 N -0.55 -6.26 6.08 -9.12 -0.06 -6.32 16 29 H 0.41 3.48 8.96 -40.82 -0.37 3.11 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.38 9.34 7.67 -40.82 -0.31 9.03 16 32 H 0.02 0.42 7.22 -51.93 -0.37 0.04 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 35 H 0.08 1.04 6.44 -51.93 -0.33 0.71 16 36 H 0.08 1.00 8.07 -51.92 -0.42 0.58 16 37 H 0.08 1.15 7.42 -51.93 -0.39 0.77 16 38 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 45 H 0.10 1.03 7.40 -51.93 -0.38 0.64 16 46 H 0.12 1.59 7.19 -51.93 -0.37 1.22 16 47 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 48 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 49 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 411.87 15.07 6.21 6.21 Total: -1.00 -33.12 411.87 -11.11 -44.22 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -7.56 Total: 12.83 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -4.72 Total: -12.26 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.10 Total: -58.70 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.12 -11.11 -44.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163001739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.487 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds