Wall clock time and date at job start Sat Apr 11 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48500 * 109.46940 * 269.99802 * 3 2 1 5 5 H 1.48500 * 109.46900 * 29.99523 * 3 2 1 6 6 H 1.48495 * 109.47197 * 149.99605 * 3 2 1 7 7 C 1.38814 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00004 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00165 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46998 * 180.02562 * 10 9 7 12 12 N 1.46508 * 109.46928 * 180.02562 * 11 10 9 13 13 C 1.46497 * 119.99666 * 269.99727 * 12 11 10 14 14 C 1.52998 * 109.47316 * 270.00069 * 13 12 11 15 15 C 1.50705 * 109.47262 * 180.02562 * 14 13 12 16 16 C 1.38235 * 119.99697 * 269.72664 * 15 14 13 17 17 C 1.38241 * 119.99618 * 179.77131 * 16 15 14 18 18 C 1.38233 * 119.99724 * 0.49885 * 17 16 15 19 19 C 1.38231 * 120.00317 * 359.75454 * 18 17 16 20 20 C 1.38229 * 119.99954 * 90.00060 * 15 14 13 21 21 C 1.34777 * 120.00399 * 89.99664 * 12 11 10 22 22 O 1.21269 * 119.99905 * 179.97438 * 21 12 11 23 23 C 1.50702 * 119.99578 * 359.97438 * 21 12 11 24 24 C 1.50704 * 109.46762 * 179.97438 * 23 21 12 25 25 C 1.34845 * 125.88833 * 85.00052 * 24 23 21 26 26 C 1.40883 * 107.41891 * 180.02562 * 25 24 23 27 27 C 1.34854 * 107.41814 * 0.02562 * 26 25 24 28 28 N 1.36343 * 108.21624 * 0.26031 * 27 26 25 29 29 H 0.96994 * 125.63652 * 179.73195 * 28 27 26 30 30 H 0.97004 * 119.99745 * 0.02562 * 1 2 3 31 31 H 0.97007 * 119.99791 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.46803 * 60.00429 * 10 9 7 33 33 H 1.08997 * 109.47082 * 300.00381 * 10 9 7 34 34 H 1.08995 * 109.47354 * 60.00429 * 11 10 9 35 35 H 1.09003 * 109.47269 * 299.99496 * 11 10 9 36 36 H 1.09010 * 109.47552 * 29.99920 * 13 12 11 37 37 H 1.08997 * 109.47611 * 149.99710 * 13 12 11 38 38 H 1.08998 * 109.47300 * 300.00057 * 14 13 12 39 39 H 1.09002 * 109.47387 * 60.00182 * 14 13 12 40 40 H 1.07998 * 120.00408 * 359.97438 * 16 15 14 41 41 H 1.07995 * 120.00007 * 180.23262 * 17 16 15 42 42 H 1.07998 * 119.99698 * 179.72804 * 18 17 16 43 43 H 1.07995 * 120.00160 * 179.97438 * 19 18 17 44 44 H 1.08003 * 120.00339 * 0.02562 * 20 15 14 45 45 H 1.09007 * 109.46806 * 60.00106 * 23 21 12 46 46 H 1.08998 * 109.47448 * 300.00182 * 23 21 12 47 47 H 1.08010 * 126.29114 * 0.04613 * 25 24 23 48 48 H 1.08008 * 126.29481 * 179.97438 * 26 25 24 49 49 H 1.08002 * 125.89007 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0016 11 6 1.0636 -4.8197 0.0022 12 7 1.7961 -6.0885 0.0029 13 6 2.1622 -6.7235 -1.2656 14 6 1.0404 -7.6657 -1.7067 15 6 1.4173 -8.3194 -3.0113 16 6 1.0670 -7.7246 -4.2089 17 6 1.4169 -8.3218 -5.4056 18 6 2.1079 -9.5190 -5.4044 19 6 2.4535 -10.1165 -4.2068 20 6 2.1082 -9.5166 -3.0102 21 6 2.1332 -6.6715 1.1703 22 8 2.7391 -7.7220 1.1707 23 6 1.7571 -6.0180 2.4751 24 6 2.2462 -6.8659 3.6209 25 6 3.4818 -6.8300 4.1597 26 6 3.5157 -7.7787 5.2007 27 6 2.2996 -8.3586 5.2581 28 7 1.5180 -7.8068 4.2868 29 1 0.5955 -8.0426 4.1019 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3881 0.0016 32 1 2.6852 -3.7142 0.8912 33 1 2.6839 -3.7150 -0.8888 34 1 0.4367 -4.7622 -0.8875 35 1 0.4373 -4.7618 0.8925 36 1 2.3126 -5.9568 -2.0257 37 1 3.0834 -7.2913 -1.1352 38 1 0.8900 -8.4324 -0.9467 39 1 0.1192 -7.0979 -1.8373 40 1 0.5230 -6.7916 -4.2098 41 1 1.1465 -7.8552 -6.3412 42 1 2.3773 -9.9878 -6.3393 43 1 2.9930 -11.0520 -4.2059 44 1 2.3776 -9.9839 -2.0744 45 1 0.6730 -5.9198 2.5330 46 1 2.2149 -5.0304 2.5321 47 1 4.2959 -6.1911 3.8503 48 1 4.3607 -8.0013 5.8356 49 1 1.9984 -9.1306 5.9507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163001739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:03 Heat of formation + Delta-G solvation = 26.486926 kcal Electronic energy + Delta-G solvation = -28677.165245 eV Core-core repulsion = 24797.234554 eV Total energy + Delta-G solvation = -3879.930691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.09354 -40.92627 -40.03218 -37.63310 -36.20168 -34.53925 -33.04557 -32.73864 -31.78403 -31.76443 -30.06576 -28.90719 -27.37250 -25.66064 -24.67277 -23.47163 -23.27842 -21.97287 -21.48536 -21.13247 -20.27901 -19.19218 -18.46261 -18.00089 -17.76673 -17.11136 -16.66332 -16.32243 -16.15081 -15.91167 -15.33521 -15.24226 -15.17847 -14.87212 -14.63814 -14.41656 -14.38629 -14.25534 -14.14840 -13.96630 -13.63176 -13.47042 -13.12800 -13.07322 -12.99525 -12.88924 -12.72083 -12.62318 -12.29346 -12.16098 -12.09395 -11.95137 -11.83025 -11.71381 -10.97483 -10.88217 -9.96368 -9.81868 -9.70748 -9.47419 -9.00375 -8.90743 -7.94575 -5.23162 0.42592 0.50280 1.29185 1.50376 1.50485 1.56543 1.59182 1.92515 2.19269 2.52240 2.59143 2.88500 3.39904 3.53769 3.81063 3.86925 3.92064 4.03560 4.12157 4.15268 4.18565 4.20891 4.27478 4.31243 4.38917 4.47007 4.52828 4.55978 4.60638 4.62499 4.64963 4.67205 4.86949 4.88677 4.94297 5.07215 5.13822 5.18468 5.19537 5.36869 5.43194 5.48830 5.53701 5.59862 5.63172 5.72579 6.09810 6.13048 6.22219 6.26902 6.32944 6.83271 7.11907 7.35841 8.07408 8.32664 9.28102 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.005439 B = 0.003614 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5146.313264 B = 7746.107502 C =12313.781753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.967 3.033 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.738 5.738 10 C 0.140 3.860 11 C 0.112 3.888 12 N -0.601 5.601 13 C 0.124 3.876 14 C -0.082 4.082 15 C -0.090 4.090 16 C -0.127 4.127 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.127 4.127 20 C -0.130 4.130 21 C 0.519 3.481 22 O -0.564 6.564 23 C -0.071 4.071 24 C 0.023 3.977 25 C -0.212 4.212 26 C -0.227 4.227 27 C -0.006 4.006 28 N -0.548 5.548 29 H 0.424 0.576 30 H 0.252 0.748 31 H 0.379 0.621 32 H 0.020 0.980 33 H 0.016 0.984 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.138 0.862 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.144 0.856 49 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.008 -21.638 -1.355 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.382 5.382 10 C 0.012 3.988 11 C -0.011 4.011 12 N -0.333 5.333 13 C 0.002 3.998 14 C -0.120 4.120 15 C -0.091 4.091 16 C -0.145 4.145 17 C -0.144 4.144 18 C -0.148 4.148 19 C -0.145 4.145 20 C -0.148 4.148 21 C 0.308 3.692 22 O -0.443 6.443 23 C -0.111 4.111 24 C -0.090 4.090 25 C -0.237 4.237 26 C -0.251 4.251 27 C -0.137 4.137 28 N -0.144 5.144 29 H 0.262 0.738 30 H 0.061 0.939 31 H 0.212 0.788 32 H 0.038 0.962 33 H 0.034 0.966 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.148 0.852 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.156 0.844 44 H 0.136 0.864 45 H 0.141 0.859 46 H 0.134 0.866 47 H 0.140 0.860 48 H 0.162 0.838 49 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.321 -22.132 -1.377 22.178 hybrid contribution -0.076 1.136 -0.120 1.145 sum 0.245 -20.997 -1.496 21.051 Atomic orbital electron populations 1.69774 1.06304 1.26122 1.59149 1.25447 0.96348 1.00691 1.03480 0.85245 0.77792 0.79959 0.77404 1.21482 1.22093 1.19772 1.19521 0.91333 0.85265 1.41596 0.91127 1.42318 1.05743 1.00608 1.89555 1.21082 0.94464 0.85274 0.97944 1.21721 0.93666 0.80714 1.04992 1.47909 1.56983 1.22639 1.05727 1.21419 0.97645 0.96188 0.84552 1.20809 0.98920 0.98388 0.93886 1.19850 0.98902 0.95517 0.94839 1.21312 1.00564 1.00426 0.92149 1.21465 0.98390 0.96029 0.98531 1.21476 0.98562 0.95937 0.98799 1.21419 1.00019 1.00695 0.92339 1.21240 0.98969 0.95763 0.98796 1.20842 0.78167 0.84451 0.85784 1.90680 1.41621 1.24278 1.87716 1.20224 1.04409 0.98830 0.87614 1.19641 0.93289 0.97448 0.98651 1.20845 0.96594 1.04732 1.01556 1.21135 0.98897 1.02138 1.02964 1.22306 0.91692 1.03089 0.96617 1.41916 1.14082 1.30681 1.27685 0.73816 0.93898 0.78826 0.96210 0.96581 0.88802 0.88467 0.89788 0.91401 0.91734 0.89823 0.85163 0.84216 0.83967 0.84417 0.86359 0.85893 0.86634 0.86026 0.83808 0.78559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.03 13.06 21.65 0.28 -55.74 16 2 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 3 Si 0.97 44.78 29.55 68.60 2.03 46.81 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.25 -13.11 9.99 84.03 0.84 -12.27 16 8 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 9 N -0.74 -34.42 5.60 -343.46 -1.92 -36.35 16 10 C 0.14 5.06 6.58 86.38 0.57 5.62 16 11 C 0.11 2.99 5.33 86.38 0.46 3.45 16 12 N -0.60 -15.57 2.47 -821.82 -2.03 -17.60 16 13 C 0.12 3.09 5.39 86.38 0.47 3.56 16 14 C -0.08 -1.78 5.67 29.85 0.17 -1.61 16 15 C -0.09 -1.97 5.13 -19.87 -0.10 -2.07 16 16 C -0.13 -2.54 9.70 22.27 0.22 -2.33 16 17 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 18 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 19 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 20 C -0.13 -2.77 9.70 22.27 0.22 -2.55 16 21 C 0.52 14.74 7.67 87.66 0.67 15.41 16 22 O -0.56 -19.64 15.61 -3.00 -0.05 -19.69 16 23 C -0.07 -1.73 4.79 29.10 0.14 -1.59 16 24 C 0.02 0.61 5.66 41.08 0.23 0.84 16 25 C -0.21 -6.18 10.76 22.14 0.24 -5.94 16 26 C -0.23 -5.64 10.86 22.14 0.24 -5.40 16 27 C -0.01 -0.11 11.94 83.21 0.99 0.88 16 28 N -0.55 -11.51 6.08 -182.76 -1.11 -12.62 16 29 H 0.42 6.29 8.96 -92.71 -0.83 5.45 16 30 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.38 18.30 7.67 -92.70 -0.71 17.59 16 32 H 0.02 0.74 7.22 -2.38 -0.02 0.72 16 33 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 2.35 8.07 -2.39 -0.02 2.33 16 35 H 0.10 2.32 6.44 -2.39 -0.02 2.31 16 36 H 0.08 2.03 8.07 -2.38 -0.02 2.01 16 37 H 0.07 1.92 7.42 -2.39 -0.02 1.90 16 38 H 0.06 1.53 8.08 -2.39 -0.02 1.51 16 39 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 40 H 0.13 2.35 8.06 -2.91 -0.02 2.32 16 41 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 43 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 45 H 0.12 2.34 7.40 -2.38 -0.02 2.32 16 46 H 0.12 2.99 7.19 -2.39 -0.02 2.98 16 47 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 48 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 49 H 0.20 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -70.76 411.87 3.10 -67.66 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: -0.58 Total: 40.80 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 6.49 Total: -13.27 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -4.78 Total: -122.31 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.76 3.10 -67.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163001739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.146 kcal (2) G-P(sol) polarization free energy of solvation -70.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds